TCONS_00017108 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017108
Unique NameTCONS_00017108
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1859

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017108 ID=TCONS_00017108|Name=TCONS_00017108|organism=Clytia hemisphaerica|type=transcript|length=1859bp
GAGCTACCATTTTGTTTGGCGAAATCGAAAGAAGGACACTGAAATTCTAC
AAATCCAGATTGACACAAACCAAACAGTCATCAAAGCtcgaaaaaataat
gaaaatcaaaatttctttaaacaTCCTATTAAGGACATTCCAACATTGAA
AATTATTACTCTAATGTCTGGAGATGTTTTCATGTACCAGAGACATGATT
TCTTTAATGAAGCGACTCAAAATTGCGATGGATCTAAAACTCATCTTTGT
AAACAACCTATAGTTACGGCAACCGGGACTGTTGGAGGTTGGGAACTAAC
CTGTTGTGCTGGATTCCTAATAGATCTTTTAAATTATGTGAAAAACGATG
TTAAGTTTGAAGCTGATCTAGAAATATCACCTAATTTCATATTCGGTGGT
TATAACGAAACTTCAAATACATTTAATGGACTTATCGGTGCCGTCAATTC
TTCCCATTACGATTTAGCTCTCGCTAGCGTTACGGTAACCGAACAGCGAA
GTCGTTTCGTCGATTTCTCACACCCATATGTTGATGTTGAAATTGGGATG
TTAATGGACTCGGCAGCGCTTAAAAACTCTATTTGGTcatattttcaatt
caattttatcGCTAATTTGGATCCATTTGTGTTCCTTTCATTTTGTGGTT
TATATTGTGTGTCTTTCGTGATTCTTGGATTTACAGAATACTATATAGCC
AAAGAGAAGAAACAGTCGTGTTTGATACTGCGTGGAAGAAGGACAAGGCT
ACGTCGTAACATCTTCCTTGAAACAGTCGCGTATTTGAATCGGTTAGCTT
TTGGACATGACTCAGGTGGTAAAGAGCCAATAACTTATGCGGGTAGAATG
ATTGCCGGGACACTGGCAGCAGCTTACATCACTATCATATCACTTTACAC
GGCTTCGTTGACTGTGGGTCAAgtacaaatgaaaaatgatttgagTGATA
TCTCACTCGACAGTGAAGTGttTGCCAATCCGACACCTGATTTCAAATTT
GCTACTTTGAAAGACAGCAGCACTGAAGGTTTCTTTAAAAATTCAGAACT
TCCCAAACTACGCAAGATGTACGAATTCATGAAAGACTACAGCTATTCCG
ACAATAAAGACGGGCTGGAACGACTTGAGAATAAAGAGTTGCAAGCTGTG
ATAGAAGAATCTTTGGTTTACAAGCATTCAAGTATAGCATGTAATCTTGA
CATCCATAACCTTAGAGTTGGTTCATCCGGATGGAGCTTTGTTTTACAAA
AGAATTCACCATGGACTGATGGAATCTCAGAATCAATAATGCGATTATCC
GAACAAGGTCGTTTAGCTGAACTACGTAAAAAATGGGTCAACTTCAAATG
CGTGACTAATAACAAAGTAGAAAGttattcttttcatttctttgcaATGC
CCTTTCTTTGTTTGGCCGCcatgtttgtttgttgttttctCACCACGTGG
CTACAAAAACTTTATTATAATTCGAATTTAAGTCGAAAGAATACATTTCA
ACCTGACATTTCGTATGGTATAGATGACCCAGCAACTGAGTGTGATACAA
ATACTAGAACTCTAAATATACCGTCCGCAAATAGTTGGCAAGATGCAAAG
ACAGCTCAGTCTACTTTTTCACTTACTACGCGGCAGATGGCGACCGCCTT
TGAGACGAACACAAATAGACGAAAAAGAAGTAGAACACATACAATAGAAT
CTACTTGCTAAAAGtcatttaaattttcttttcagtttcagtttttcTTA
TGTTAATTAATTTTGCGGGGTTTATTCGTGATATCATGGTGATATTTATT
GCATAATGTTTTATACAGAAGTAgccactaattttgaatttaaacagtAT
AAACCTTCc
Run BLAST on NCBI

protein sequence of TCONS_00017108-protein

>TCONS_00017108-protein ID=TCONS_00017108-protein|Name=TCONS_00017108-protein|organism=Clytia hemisphaerica|type=polypeptide|length=569bp
SYHFVWRNRKKDTEILQIQIDTNQTVIKARKNNENQNFFKHPIKDIPTLK
IITLMSGDVFMYQRHDFFNEATQNCDGSKTHLCKQPIVTATGTVGGWELT
CCAGFLIDLLNYVKNDVKFEADLEISPNFIFGGYNETSNTFNGLIGAVNS
SHYDLALASVTVTEQRSRFVDFSHPYVDVEIGMLMDSAALKNSIWSYFQF
NFIANLDPFVFLSFCGLYCVSFVILGFTEYYIAKEKKQSCLILRGRRTRL
RRNIFLETVAYLNRLAFGHDSGGKEPITYAGRMIAGTLAAAYITIISLYT
ASLTVGQVQMKNDLSDISLDSEVFANPTPDFKFATLKDSSTEGFFKNSEL
PKLRKMYEFMKDYSYSDNKDGLERLENKELQAVIEESLVYKHSSIACNLD
IHNLRVGSSGWSFVLQKNSPWTDGISESIMRLSEQGRLAELRKKWVNFKC
VTNNKVESYSFHFFAMPFLCLAAMFVCCFLTTWLQKLYYNSNLSRKNTFQ
PDISYGIDDPATECDTNTRTLNIPSANSWQDAKTAQSTFSLTTRQMATAF
ETNTNRRKRSRTHTIESTC
Run BLAST on NCBI

transcript from alignment at sc0000259:292037..295864+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017108 ID=TCONS_00017108|Name=TCONS_00017108|organism=Clytia hemisphaerica|type=transcript|length=3828bp|location=Sequence derived from alignment at sc0000259:292037..295864+ (Clytia hemisphaerica)
GAGCTACCATTTTGTTTGGCGAAATCGAAAGAAGGACACTGAAATTCTAC
AAATCCAGATTGACACAAACCAAACAGTCATCAAAGCtcgaaaaaataat
gaaaatcaaaatttctttaaacaTCCTATTAAGGACATTCCAACATTGAA
AATTATTACTCTAATGTCTGGAGATGTTTTCATGTACCAGAGACATGATT
TCTTTAATGAAGCGACTCAAAATTGCGATGGATCTAAAACTCATCTTTGT
AAACAACCTATAGTTACGGCAACCGGGACTGTTGGAGGTTGGGAACTAAC
CTGTTGTGCTGGATTCCTAATAGATCTTTTAAATTATGTGAAAAACGATG
TTAAGTTTGAAGCTGATCTAGAAATATCACCTAATTTCATATTCGGTGGT
TATAACGAAACTTCAAATACATTTAATGGACTTATCGGTGCCGTCAATTC
TTCCCATTACGATTTAGCTCTCGCTAGCGTTACGGTAACCGAACAGCGAA
GTCGTTTCGTCGATTTCTCACACCCATATGTTGATGTTGAAATTGGGATG
TTAATGGACTCGGCAGCGCTTAAAAACTCTATTTGGTcatattttcaatt
caattttatcGCTAATTTGGATCCATTTGTGTTCCTTTCATTTTGTGGTT
TATATTGTGTGTCTTTCGTGATTCTTGGATTTACAGAATACTATATAGCC
AAAGAGAAGAAACAGTCGTGTTTGATACTGCGTGGAAGAAGGACAAGGCT
ACGTCGTAACATCTTCCTTGAAACAGTCGCGTATTTGAATCGGTTAGCTT
TTGGACATGACTCAGGTGGTGAGTAGGAATTTTTGTATTGGTGATAGACT
AGGAAACTAGTCTGTCAATTAATCGTGTCCGAGGTTTAGAATCAAAGGGT
GGGTAGGGCGTTTGCTAAAATAGCAGCTTTATGGGAGAAATGTTGGTGAG
AGGGAGTTCTGTTGAAGCTTGCAACCTAacccgccgacaaaatttcgaCC
ATGAGCCGACTGCAATATTATACTCTGCTTTATCCCGTTATAGATTTTTG
ACTTTGCTCCAAGTGATACATACTATCTCACAGTTCCGGTGAACCTTTTT
TCCACACCGGGGATAAAATTCcttttgaaatcccaatggggatgaaattc
tattgtttcaaggttGAAAAACCCAGTAGGGacggttttggagtgcaatt
tttaatcATTGAATTTCGATTGGGAATGATattaaagtcaatttcctaAT
TTCCCGAAGTTCGAGCTTATTTTTCCGAgacttttgccaaattttccagt
gggggtTGGGGTCTTAGCGGTTCTGTGACACAGATGTGTGATAATGGTTG
ATTTCTTTTAAATTGGGATATAAAATCATGGAATGAGTACACCATATTTT
ATTCTATCATTTGTTTAGGTAAAGAGCCAATAACTTATGCGGGTAGAATG
ATTGCCGGGACACTGGCAGCAGCTTACATCACTATCATATCACTTTACAC
GGCTTCGTTGACTGTGGGTCAAgtacaaatgaaaaatgatttgagTGATA
TCTCACTCGACAGTGAAGTGGTGAGTAcgtctggctgaactttgcttttt
gatgatttttgatgacgttgagttcagtgaagtagactaggagcatttgg
acgaggttgccattttgaaaaagaatgtttaaaatccaaataacaaaaaa
actacttggagttgaaagatataatcaaaaatgagaaaaaaacatcaata
acagatttgcaatcccttctCAAATAAAAACGTTGCTTCATATTGTTTTt
atcttccaaaaacaactaaaatcttcgcctaagcaaaagcatattaccat
atactaccaggccacttaatcgcgccatccagtctaccaaaaagctttaa
gtggaccccgggctaagaCTGCAGTTGTTTATAATccatgtaatacagta
atatggatgTTACACGATAATTGTTATGGAGAAATATGAGTTTGTATAAA
TCTACGATTTGTTTCACctattattttttgcttattttttacaaaaatgc
gaACTAAAGGACCTGAGTTCAAGCTTGTTTAAAGGGTCACGTGTAACTTC
TTTTTACTCAAGTTTCTACCTTTGAAATGTTGACTCATGGCAGGGATTGA
AATTTGGGGTAGTGAGTGACAGTTTTTGGAACTTGTCAAAATTAATAATA
TTCTATGTATAAAGTActgaaaaaatgactaaaaattcTTCTTGAAATGA
TCCTCTTATTACGAAAGTCTCGGCTAGTAGACTGGGAAATATCAAtagac
ttttttaaatttcagttTGCCAATCCGACACCTGATTTCAAATTTGCTAC
TTTGAAAGACAGCAGCACTGAAGGTTTCTTTAAAAATTCAGAACTTCCCA
AACTACGCAAGATGTACGAATTCATGAAAGACTACAGCTATTCCGACAAT
AAAGACGGGCTGGAACGACTTGAGAATAAGtaagtcattttctttttgta
atttctgTAACCCAatgcattgagtttaaaggccgaagggctagagtaga
atctctaaccttttcgaggcaagaaaaagtgaagccacttatttcccatt
cagaaCGTGCCTGGAATGCACGCAGTCATGACCtgggattgtatctagcg
gttcctttgtttttgagtactacattttttgaaatctattttgaaatcta
gcgatagattttacttttaatccggcgtttgtgtaaaaaccacgcgcggg
cgttctggatgggcaATCAAGTAACTTTGTTTCCCATCCAAAAGTTTCta
ctctagccccttcgggggctttaaactcaatgaccCAATGCGAGTTAGTC
TGTGCGTAACCCAAAGTAGGCTTTTTTCATTAATATTTTGAGTGTAACGA
CcgtctcgttttgaaaccattactaAGGTGATTAAATCACTTGAGTTTTT
GAATAGAGTAAACTTCCTATGAACTCTCCTCTGGGAATCAACCACCATTG
TACTTTAATCAGGACGTGTAAACACATTCATGTTAACGCAGTATAAAGCA
ATATGCTTCCAGCCAATCACTAATTTCAGCTTCTacttttaaatttcatt
caGAGAGTTGCAAGCTGTGATAGAAGAATCTTTGGTTTACAAGCATTCAA
GTATAGCATGTAATCTTGACATCCATAACCTTAGAGTTGGTTCATCCGGA
TGGAGCTTTGTTTTACAAAAGAATTCACCATGGACTGATGGAATCTCAGA
ATCAATAATGCGATTATCCGAACAAGGTCGTTTAGCTGAACTACGTAAAA
AATGGGTCAACTTCAAATGCGTGACTAATAACAAAGTAGAAAGttattct
tttcatttctttgcaATGCCCTTTCTTTGTTTGGCCGCcatgtttgtttg
ttgttttctCACCACGTGGCTACAAAAACTTTATTATAATTCGAATTTAA
GTCGAAAGAATACATTTCAACCTGACATTTCGTATGGTATAGATGACCCA
GCAACTGAGTGTGATACAAATACTAGAACTCTAAATATACCGTCCGCAAA
TAGTTGGCAAGATGCAAAGACAGCTCAGTCTACTTTTTCACTTACTACGC
GGCAGATGGCGACCGCCTTTGAGACGAACACAAATAGACGAAAAAGAAGT
AGAACACATACAATAGAATCTACTTGCTAAAAGtcatttaaattttcttt
tcagtttcagtttttcTTATGTTAATTAATTTTGCGGGGTTTATTCGTGA
TATCATGGTGATATTTATTGCATAATGTTTTATACAGAAGTAgccactaa
ttttgaatttaaacagtATAAACCTTCc

Coding sequence (CDS) from alignment at sc0000259:292037..295864+

>TCONS_00017108 ID=TCONS_00017108|Name=TCONS_00017108|organism=Clytia hemisphaerica|type=CDS|length=6840bp|location=Sequence derived from alignment at sc0000259:292037..295864+ (Clytia hemisphaerica)
AGCTACCATTTTGTTTGGCGAAATCGAAAGAAGGACACTGAAATTCTACA
AATCCAGATTGACACAAACCAAACAGTCATCAAAGCtcgaaaaaataatg
aaaatcaaaatttctttaaacaTCCTATTAAGGACATTCCAACATTGAAA
ATTATTACTCTAATGTCTGGAGATGTTTTCATGTACCAGAGACATGATTT
CTTTAATGAAGCGACTCAAAATTGCGATGGATCTAAAACTCATCTTTGTA
AACAACCTATAGTTACGGCAACCGGGACTGTTGGAGGTTGGGAACTAACC
TGTTGTGCTGGATTCCTAATAGATCTTTTAAATTATGTGAAAAACGATGT
TAAGTTTGAAGCTGATCTAGAAATATCACCTAATTTCATATTCGGTGGTT
ATAACGAAACTTCAAATACATTTAATGGACTTATCGGTGCCGTCAATTCT
TCCCATTACGATTTAGCTCTCGCTAGCGTTACGGTAACCGAACAGCGAAG
TCGTTTCGTCGATTTCTCACACCCATATGTTGATGTTGAAATTGGGATGT
TAATGGACTCGGCAGCGCTTAAAAACTCTATTTGGTcatattttcaattc
aattttatcGCTAATTTGGATCCATTTGTGTTCCTTTCATTTTGTGGTTT
ATATTGTGTGTCTTTCGTGATTCTTGGATTTACAGAATACTATATAGCCA
AAGAGAAGAAACAGTCGTGTTTGATACTGCGTGGAAGAAGGACAAGGCTA
CGTCGTAACATCTTCCTTGAAACAGTCGCGTATTTGAATCGGTTAGCTTT
TGGACATGACTCAGGTGGTAAAGAGCCAATAACTTATGCGGGTAGAATGA
TTGCCGGGACACTGGCAGCAGCTTACATCACTATCATATCACTTTACACG
GCTTCGTTGACTGTGGGTCAAgtacaaatgaaaaatgatttgagTGATAT
CTCACTCGACAGTGAAGTGttTGCCAATCCGACACCTGATTTCAAATTTG
CTACTTTGAAAGACAGCAGCACTGAAGGTTTCTTTAAAAATTCAGAACTT
CCCAAACTACGCAAGATGTACGAATTCATGAAAGACTACAGCTATTCCGA
CAATAAAGACGGGCTGGAACGACTTGAGAATAAAGAGTTGCAAGCTGTGA
TAGAAGAATCTTTGGTTTACAAGCATTCAAGTATAGCATGTAATCTTGAC
ATCCATAACCTTAGAGTTGGTTCATCCGGATGGAGCTTTGTTTTACAAAA
GAATTCACCATGGACTGATGGAATCTCAGAATCAATAATGCGATTATCCG
AACAAGGTCGTTTAGCTGAACTACGTAAAAAATGGGTCAACTTCAAATGC
GTGACTAATAACAAAGTAGAAAGttattcttttcatttctttgcaATGCC
CTTTCTTTGTTTGGCCGCcatgtttgtttgttgttttctCACCACGTGGC
TACAAAAACTTTATTATAATTCGAATTTAAGTCGAAAGAATACATTTCAA
CCTGACATTTCGTATGGTATAGATGACCCAGCAACTGAGTGTGATACAAA
TACTAGAACTCTAAATATACCGTCCGCAAATAGTTGGCAAGATGCAAAGA
CAGCTCAGTCTACTTTTTCACTTACTACGCGGCAGATGGCGACCGCCTTT
GAGACGAACACAAATAGACGAAAAAGAAGTAGAACACATACAATAGAATC
TACTTGCTAAAGCTACCATTTTGTTTGGCGAAATCGAAAGAAGGACACTG
AAATTCTACAAATCCAGATTGACACAAACCAAACAGTCATCAAAGCtcga
aaaaataatgaaaatcaaaatttctttaaacaTCCTATTAAGGACATTCC
AACATTGAAAATTATTACTCTAATGTCTGGAGATGTTTTCATGTACCAGA
GACATGATTTCTTTAATGAAGCGACTCAAAATTGCGATGGATCTAAAACT
CATCTTTGTAAACAACCTATAGTTACGGCAACCGGGACTGTTGGAGGTTG
GGAACTAACCTGTTGTGCTGGATTCCTAATAGATCTTTTAAATTATGTGA
AAAACGATGTTAAGTTTGAAGCTGATCTAGAAATATCACCTAATTTCATA
TTCGGTGGTTATAACGAAACTTCAAATACATTTAATGGACTTATCGGTGC
CGTCAATTCTTCCCATTACGATTTAGCTCTCGCTAGCGTTACGGTAACCG
AACAGCGAAGTCGTTTCGTCGATTTCTCACACCCATATGTTGATGTTGAA
ATTGGGATGTTAATGGACTCGGCAGCGCTTAAAAACTCTATTTGGTcata
ttttcaattcaattttatcGCTAATTTGGATCCATTTGTGTTCCTTTCAT
TTTGTGGTTTATATTGTGTGTCTTTCGTGATTCTTGGATTTACAGAATAC
TATATAGCCAAAGAGAAGAAACAGTCGTGTTTGATACTGCGTGGAAGAAG
GACAAGGCTACGTCGTAACATCTTCCTTGAAACAGTCGCGTATTTGAATC
GGTTAGCTTTTGGACATGACTCAGGTGGTAAAGAGCCAATAACTTATGCG
GGTAGAATGATTGCCGGGACACTGGCAGCAGCTTACATCACTATCATATC
ACTTTACACGGCTTCGTTGACTGTGGGTCAAgtacaaatgaaaaatgatt
tgagTGATATCTCACTCGACAGTGAAGTGttTGCCAATCCGACACCTGAT
TTCAAATTTGCTACTTTGAAAGACAGCAGCACTGAAGGTTTCTTTAAAAA
TTCAGAACTTCCCAAACTACGCAAGATGTACGAATTCATGAAAGACTACA
GCTATTCCGACAATAAAGACGGGCTGGAACGACTTGAGAATAAAGAGTTG
CAAGCTGTGATAGAAGAATCTTTGGTTTACAAGCATTCAAGTATAGCATG
TAATCTTGACATCCATAACCTTAGAGTTGGTTCATCCGGATGGAGCTTTG
TTTTACAAAAGAATTCACCATGGACTGATGGAATCTCAGAATCAATAATG
CGATTATCCGAACAAGGTCGTTTAGCTGAACTACGTAAAAAATGGGTCAA
CTTCAAATGCGTGACTAATAACAAAGTAGAAAGttattcttttcatttct
ttgcaATGCCCTTTCTTTGTTTGGCCGCcatgtttgtttgttgttttctC
ACCACGTGGCTACAAAAACTTTATTATAATTCGAATTTAAGTCGAAAGAA
TACATTTCAACCTGACATTTCGTATGGTATAGATGACCCAGCAACTGAGT
GTGATACAAATACTAGAACTCTAAATATACCGTCCGCAAATAGTTGGCAA
GATGCAAAGACAGCTCAGTCTACTTTTTCACTTACTACGCGGCAGATGGC
GACCGCCTTTGAGACGAACACAAATAGACGAAAAAGAAGTAGAACACATA
CAATAGAATCTACTTGCTAAAGCTACCATTTTGTTTGGCGAAATCGAAAG
AAGGACACTGAAATTCTACAAATCCAGATTGACACAAACCAAACAGTCAT
CAAAGCtcgaaaaaataatgaaaatcaaaatttctttaaacaTCCTATTA
AGGACATTCCAACATTGAAAATTATTACTCTAATGTCTGGAGATGTTTTC
ATGTACCAGAGACATGATTTCTTTAATGAAGCGACTCAAAATTGCGATGG
ATCTAAAACTCATCTTTGTAAACAACCTATAGTTACGGCAACCGGGACTG
TTGGAGGTTGGGAACTAACCTGTTGTGCTGGATTCCTAATAGATCTTTTA
AATTATGTGAAAAACGATGTTAAGTTTGAAGCTGATCTAGAAATATCACC
TAATTTCATATTCGGTGGTTATAACGAAACTTCAAATACATTTAATGGAC
TTATCGGTGCCGTCAATTCTTCCCATTACGATTTAGCTCTCGCTAGCGTT
ACGGTAACCGAACAGCGAAGTCGTTTCGTCGATTTCTCACACCCATATGT
TGATGTTGAAATTGGGATGTTAATGGACTCGGCAGCGCTTAAAAACTCTA
TTTGGTcatattttcaattcaattttatcGCTAATTTGGATCCATTTGTG
TTCCTTTCATTTTGTGGTTTATATTGTGTGTCTTTCGTGATTCTTGGATT
TACAGAATACTATATAGCCAAAGAGAAGAAACAGTCGTGTTTGATACTGC
GTGGAAGAAGGACAAGGCTACGTCGTAACATCTTCCTTGAAACAGTCGCG
TATTTGAATCGGTTAGCTTTTGGACATGACTCAGGTGGTAAAGAGCCAAT
AACTTATGCGGGTAGAATGATTGCCGGGACACTGGCAGCAGCTTACATCA
CTATCATATCACTTTACACGGCTTCGTTGACTGTGGGTCAAgtacaaatg
aaaaatgatttgagTGATATCTCACTCGACAGTGAAGTGttTGCCAATCC
GACACCTGATTTCAAATTTGCTACTTTGAAAGACAGCAGCACTGAAGGTT
TCTTTAAAAATTCAGAACTTCCCAAACTACGCAAGATGTACGAATTCATG
AAAGACTACAGCTATTCCGACAATAAAGACGGGCTGGAACGACTTGAGAA
TAAAGAGTTGCAAGCTGTGATAGAAGAATCTTTGGTTTACAAGCATTCAA
GTATAGCATGTAATCTTGACATCCATAACCTTAGAGTTGGTTCATCCGGA
TGGAGCTTTGTTTTACAAAAGAATTCACCATGGACTGATGGAATCTCAGA
ATCAATAATGCGATTATCCGAACAAGGTCGTTTAGCTGAACTACGTAAAA
AATGGGTCAACTTCAAATGCGTGACTAATAACAAAGTAGAAAGttattct
tttcatttctttgcaATGCCCTTTCTTTGTTTGGCCGCcatgtttgtttg
ttgttttctCACCACGTGGCTACAAAAACTTTATTATAATTCGAATTTAA
GTCGAAAGAATACATTTCAACCTGACATTTCGTATGGTATAGATGACCCA
GCAACTGAGTGTGATACAAATACTAGAACTCTAAATATACCGTCCGCAAA
TAGTTGGCAAGATGCAAAGACAGCTCAGTCTACTTTTTCACTTACTACGC
GGCAGATGGCGACCGCCTTTGAGACGAACACAAATAGACGAAAAAGAAGT
AGAACACATACAATAGAATCTACTTGCTAAAGCTACCATTTTGTTTGGCG
AAATCGAAAGAAGGACACTGAAATTCTACAAATCCAGATTGACACAAACC
AAACAGTCATCAAAGCtcgaaaaaataatgaaaatcaaaatttctttaaa
caTCCTATTAAGGACATTCCAACATTGAAAATTATTACTCTAATGTCTGG
AGATGTTTTCATGTACCAGAGACATGATTTCTTTAATGAAGCGACTCAAA
ATTGCGATGGATCTAAAACTCATCTTTGTAAACAACCTATAGTTACGGCA
ACCGGGACTGTTGGAGGTTGGGAACTAACCTGTTGTGCTGGATTCCTAAT
AGATCTTTTAAATTATGTGAAAAACGATGTTAAGTTTGAAGCTGATCTAG
AAATATCACCTAATTTCATATTCGGTGGTTATAACGAAACTTCAAATACA
TTTAATGGACTTATCGGTGCCGTCAATTCTTCCCATTACGATTTAGCTCT
CGCTAGCGTTACGGTAACCGAACAGCGAAGTCGTTTCGTCGATTTCTCAC
ACCCATATGTTGATGTTGAAATTGGGATGTTAATGGACTCGGCAGCGCTT
AAAAACTCTATTTGGTcatattttcaattcaattttatcGCTAATTTGGA
TCCATTTGTGTTCCTTTCATTTTGTGGTTTATATTGTGTGTCTTTCGTGA
TTCTTGGATTTACAGAATACTATATAGCCAAAGAGAAGAAACAGTCGTGT
TTGATACTGCGTGGAAGAAGGACAAGGCTACGTCGTAACATCTTCCTTGA
AACAGTCGCGTATTTGAATCGGTTAGCTTTTGGACATGACTCAGGTGGTA
AAGAGCCAATAACTTATGCGGGTAGAATGATTGCCGGGACACTGGCAGCA
GCTTACATCACTATCATATCACTTTACACGGCTTCGTTGACTGTGGGTCA
AgtacaaatgaaaaatgatttgagTGATATCTCACTCGACAGTGAAGTGt
tTGCCAATCCGACACCTGATTTCAAATTTGCTACTTTGAAAGACAGCAGC
ACTGAAGGTTTCTTTAAAAATTCAGAACTTCCCAAACTACGCAAGATGTA
CGAATTCATGAAAGACTACAGCTATTCCGACAATAAAGACGGGCTGGAAC
GACTTGAGAATAAAGAGTTGCAAGCTGTGATAGAAGAATCTTTGGTTTAC
AAGCATTCAAGTATAGCATGTAATCTTGACATCCATAACCTTAGAGTTGG
TTCATCCGGATGGAGCTTTGTTTTACAAAAGAATTCACCATGGACTGATG
GAATCTCAGAATCAATAATGCGATTATCCGAACAAGGTCGTTTAGCTGAA
CTACGTAAAAAATGGGTCAACTTCAAATGCGTGACTAATAACAAAGTAGA
AAGttattcttttcatttctttgcaATGCCCTTTCTTTGTTTGGCCGCca
tgtttgtttgttgttttctCACCACGTGGCTACAAAAACTTTATTATAAT
TCGAATTTAAGTCGAAAGAATACATTTCAACCTGACATTTCGTATGGTAT
AGATGACCCAGCAACTGAGTGTGATACAAATACTAGAACTCTAAATATAC
CGTCCGCAAATAGTTGGCAAGATGCAAAGACAGCTCAGTCTACTTTTTCA
CTTACTACGCGGCAGATGGCGACCGCCTTTGAGACGAACACAAATAGACG
AAAAAGAAGTAGAACACATACAATAGAATCTACTTGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009566XLOC_009566Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017108-exon-sc0000259-1491911889:292037..292854TCONS_00017108-exon-sc0000259-1491911889:292037..292854Clytia hemisphaericaexon
TCONS_00017108-exon-sc0000259-1510915933:292037..292854TCONS_00017108-exon-sc0000259-1510915933:292037..292854Clytia hemisphaericaexon
TCONS_00017108-exon-sc0000259-1575043694:292037..292854TCONS_00017108-exon-sc0000259-1575043694:292037..292854Clytia hemisphaericaexon
TCONS_00017108-exon-sc0000259-1491911889:293455..293606TCONS_00017108-exon-sc0000259-1491911889:293455..293606Clytia hemisphaericaexon
TCONS_00017108-exon-sc0000259-1510915933:293455..293606TCONS_00017108-exon-sc0000259-1510915933:293455..293606Clytia hemisphaericaexon
TCONS_00017108-exon-sc0000259-1575043694:293455..293606TCONS_00017108-exon-sc0000259-1575043694:293455..293606Clytia hemisphaericaexon
TCONS_00017108-exon-sc0000259-1491911889:294352..294515TCONS_00017108-exon-sc0000259-1491911889:294352..294515Clytia hemisphaericaexon
TCONS_00017108-exon-sc0000259-1510915933:294352..294515TCONS_00017108-exon-sc0000259-1510915933:294352..294515Clytia hemisphaericaexon
TCONS_00017108-exon-sc0000259-1575043694:294352..294515TCONS_00017108-exon-sc0000259-1575043694:294352..294515Clytia hemisphaericaexon
TCONS_00017108-exon-sc0000259-1491911889:295140..295864TCONS_00017108-exon-sc0000259-1491911889:295140..295864Clytia hemisphaericaexon
TCONS_00017108-exon-sc0000259-1510915933:295140..295864TCONS_00017108-exon-sc0000259-1510915933:295140..295864Clytia hemisphaericaexon
TCONS_00017108-exon-sc0000259-1575043694:295140..295864TCONS_00017108-exon-sc0000259-1575043694:295140..295864Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017108-proteinTCONS_00017108-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000259supercontigsc0000259:292037..295864 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.12901	0.25161	0.121726	0.0952722	0	0.0229132	0.80167	0.828153	0.579809	0.605971	0.348545	0.44392	0.343202	0.237612	0.170931	0.222743	0.920049	1.19118	0.457135	0.69362	1.91259	1.61229	0.739601	1.23274	1.1081	2.74022	0.235864	0.0629302	0.0715955	0.121574
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001320Iontro_rcpt
IPR019594Glu/Gly-bd
Vocabulary: Molecular Function
TermDefinition
GO:0004970ionotropic glutamate receptor activity
GO:0005234extracellular-glutamate-gated ion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
molecular_function GO:0005234 extracellular-glutamate-gated ion channel activity
molecular_function GO:0004970 ionotropic glutamate receptor activity
Blast
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BLAST of TCONS_00017108 vs. Swiss-Prot (Human)
Match: NMDZ1 (Glutamate receptor ionotropic, NMDA 1 OS=Homo sapiens GN=GRIN1 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 4.349e-29
Identity = 114/515 (22.14%), Postives = 227/515 (44.08%), Query Frame = 2 
Query:  215 TQNCDGSKTHLCKQPIVTATGTVGGWELTCCAGFLIDLLNYVKNDVKFEADLEISPNFIFGGYNETSNT----FNGLIGAVNSSHYDLALASVTVTEQRSRFVDFSHPYVDVEIGMLMDSAALKNSIWSYFQFNFIANLDPFVFLSFCGLYCVSFVILGFT---EYYIAKEKKQSCXXXXXXXXXXXXNIFLETVAYLNRLAFGHDSGGKEPITYAGRMIAGTLAAAYITIISLYTASLTVGQVQMKNDLSDISLDSEVFANPTPDFKFATLKDSSTEGFFKNSELPKLRKMYEFMKDYSYSDNKDGLERLENKELQAVIEESLVYK-HSSIACNLDIHNLRVGSSGWSFVLQKNSPWTDGISESIMRLSEQGRLAELRKKWVNFK-CVT-NNKVESYSFHFFAMPFLCLAAMFVCCFLTTWLQKLYYNSNLSRKNTFQPDISYGIDDPATECDTNTRTLNIPSANSW----QDAKTA--------QSTFSLTTRQMATAFETNTNRRKRSRTHT 1693
            T N D  K  +C  P  T+ G+       CC GF IDLL  +   + F  ++ +  +  FG     +N+    +NG++G + S   D+ +A +T+  +R+++++FS P+    + +L+     ++++ S+ Q  F + L   V LS   +  + +++  F+    + +  E+++   +           + L +             G   P +++ R++    A   + I++ YTA+L    V  + +     ++     NP+  F +AT+K SS + +F+     +L  MY  M+ ++Y    + ++ + + +L A I +S V +  +S  C+L         SG+   ++K+SPW   +S SI++  E G + +L K WV ++ C + +N   + +F   A  F+ +A   V      +++  Y     +R+   Q                    L   + N W    QD K+         ++TF   T  +A++F     +R+RS   T
Sbjct:  425 TVNGDPVKKVICTGPNDTSPGSPRHTVPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKEIPRSTLDSFMQ-PFQSTLWLLVGLSVHVVAVMLYLLDRFSPFGRFKVNSEEEEEDALTLSSAMWFSWGVLLNS-----------GIGEGAPRSFSARILGMVWAGFAMIIVASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQV--ELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRYQECDSRSNAPATLTFENMAGVFMLVAGGIVAGIFLIFIEIAYKRHKDARRKQMQ--------------------LAFAAVNVWRKNLQDRKSGRAEPDPKKKATFRAITSTLASSF-----KRRRSSKDT 900
The following BLAST results are available for this feature:
BLAST of TCONS_00017108 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NMDZ14.349e-2922.14Glutamate receptor ionotropic, NMDA 1 OS=Homo sapi... [more]
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