TCONS_00017108-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00017108-protein
Unique Name	TCONS_00017108-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	569

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00017108-protein ID=TCONS_00017108-protein|Name=TCONS_00017108-protein|organism=Clytia hemisphaerica|type=polypeptide|length=569bp
SYHFVWRNRKKDTEILQIQIDTNQTVIKARKNNENQNFFKHPIKDIPTLK
IITLMSGDVFMYQRHDFFNEATQNCDGSKTHLCKQPIVTATGTVGGWELT
CCAGFLIDLLNYVKNDVKFEADLEISPNFIFGGYNETSNTFNGLIGAVNS
SHYDLALASVTVTEQRSRFVDFSHPYVDVEIGMLMDSAALKNSIWSYFQF
NFIANLDPFVFLSFCGLYCVSFVILGFTEYYIAKEKKQSCLILRGRRTRL
RRNIFLETVAYLNRLAFGHDSGGKEPITYAGRMIAGTLAAAYITIISLYT
ASLTVGQVQMKNDLSDISLDSEVFANPTPDFKFATLKDSSTEGFFKNSEL
PKLRKMYEFMKDYSYSDNKDGLERLENKELQAVIEESLVYKHSSIACNLD
IHNLRVGSSGWSFVLQKNSPWTDGISESIMRLSEQGRLAELRKKWVNFKC
VTNNKVESYSFHFFAMPFLCLAAMFVCCFLTTWLQKLYYNSNLSRKNTFQ
PDISYGIDDPATECDTNTRTLNIPSANSWQDAKTAQSTFSLTTRQMATAF
ETNTNRRKRSRTHTIESTC

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_009566	XLOC_009566	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00017108	TCONS_00017108	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001320	Iontro_rcpt
IPR019594	Glu/Gly-bd

Vocabulary: **Molecular Function**
Term	Definition
GO:0004970	ionotropic glutamate receptor activity
GO:0005234	extracellular-glutamate-gated ion channel activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
molecular_function	GO:0005234	extracellular-glutamate-gated ion channel activity
molecular_function	GO:0004970	ionotropic glutamate receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001320	Ionotropic glutamate receptor	SMART	SM00079	GluR_14	coord: 91..448 e-value: 4.4E-8 score: 23.9
IPR019594	Ionotropic glutamate receptor, L-glutamate and glycine-binding domain	SMART	SM00918	Lig_chan_Glu_bd_2	coord: 86..150 e-value: 0.0082 score: 23.6
IPR019594	Ionotropic glutamate receptor, L-glutamate and glycine-binding domain	PFAM	PF10613	Lig_chan-Glu_bd	coord: 100..186 e-value: 2.3E-19 score: 69.6
None	No IPR available	GENE3D	3.40.190.10		coord: 303..401 e-value: 1.0E-13 score: 51.0
None	No IPR available	GENE3D	3.40.190.10		coord: 41..213 e-value: 1.3E-17 score: 63.3
None	No IPR available	SUPERFAMILY	53850	Periplasmic binding protein-like II	coord: 101..188 coord: 329..449

Blast

[Close]

BLAST of TCONS_00017108-protein vs. Swiss-Prot (Human)
Match: NMDZ1 (Glutamate receptor ionotropic, NMDA 1 OS=Homo sapiens GN=GRIN1 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.022e-30
Identity = 124/544 (22.79%), Postives = 243/544 (44.67%), Query Frame = 0

Query:   49 LKIITLMSGDVFMYQRHDFFN-----EATQNCDGSKTHLCKQPIVTATGTVGGWELTCCAGFLIDLLNYVKNDVKFEADLEISPNFIFGGYNETSNT----FNGLIGAVNSSHYDLALASVTVTEQRSRFVDFSHPYVDVEIGMLMDSAALKNSIWSYFQFNFIANLDPFVFLSFCGLYCVSFVILGFTEY----YIAKEKKQSCLILRGRRTRLRRNIFLETVAYLNRLAFGHDSGGKEPITYAGRMIAGTLAAAYITIISLYTASLTVGQVQMKNDLSDISLDSEVFANPTPDFKFATLKDSSTEGFFKNSELPKLRKMYEFMKDYSYSDNKDGLERLENKELQAVIEESLVYK-HSSIACNLDIHNLRVGSSGWSFVLQKNSPWTDGISESIMRLSEQGRLAELRKKWVNFK-CVT-NNKVESYSFHFFAMPFLCLAAMFVCCFLTTWLQKLYYNSNLSRKNTFQPDISYGIDDPATECDTNTRTLNIPSANSW----QDAKTA--------QSTFSLTTRQMATAFETNTNRRKRSRTHT 564
            LKI+T+   + F+Y +    +     E T N D  K  +C  P  T+ G+       CC GF IDLL  +   + F  ++ +  +  FG     +N+    +NG++G + S   D+ +A +T+  +R+++++FS P+    + +L+     ++++ S+ Q  F + L   V LS   +  + +++  F+ +      ++E+++  L L          ++      LN        G   P +++ R++    A   + I++ YTA+L    V  + +     ++     NP+  F +AT+K SS + +F+     +L  MY  M+ ++Y    + ++ + + +L A I +S V +  +S  C+L         SG+   ++K+SPW   +S SI++  E G + +L K WV ++ C + +N   + +F   A  F+ +A   V      +++  Y     +R+   Q                    L   + N W    QD K+         ++TF   T  +A++F     +R+RS   T
Sbjct:  398 LKIVTIHQ-EPFVYVKPTLSDGTCKEEFTVNGDPVKKVICTGPNDTSPGSPRHTVPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKEIPRSTLDSFMQ-PFQSTLWLLVGLSVHVVAVMLYLLDRFSPFGRFKVNSEEEEEDALTLSS-------AMWFSWGVLLN-----SGIGEGAPRSFSARILGMVWAGFAMIIVASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQV--ELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRYQECDSRSNAPATLTFENMAGVFMLVAGGIVAGIFLIFIEIAYKRHKDARRKQMQ--------------------LAFAAVNVWRKNLQDRKSGRAEPDPKKKATFRAITSTLASSF-----KRRRSSKDT 900

The following BLAST results are available for this feature:

BLAST of TCONS_00017108-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00017108-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NMDZ1	2.022e-30	22.79	Glutamate receptor ionotropic, NMDA 1 OS=Homo sapi...	[more]

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TCONS_00017108-protein (polypeptide) - C. hemisphaerica