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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017096 ID=TCONS_00017096|Name=TCONS_00017096|organism=Clytia hemisphaerica|type=transcript|length=818bp
TtctagataaaaatattaaaagtgATCTTAAAAATTGAGAGACAAGATAA
AAGATATTCATAATGGAACAATTTTGCAAAAGTTGCATCAATCTAAGGCA
TGGTTTACATTTAGCAAGAAGAACTTTCAAACCGACCACACAAAgaccac
taTTACTCCCCACATACAGTCAACTTCGTTCCTACTCAATCAAAGACAGA
ACCTCAGAACGTAAATATAGACATGGAAAACTGATTGTAGAGCATGTGGA
AGATCCAACATTGTACCCATTCTTTCTGATGATCTTCTCTGGTACCGATC
AAGTCGTTCTTGATGCTTATCTCCATGAAGTTAAAAAAGCTGCCAAAATG
GTCGACGTCAATCTTACCAAAAGTTTCAACTTACCAGCAATCGAAGAGAC
GCACAAAGCAAAACGCGAGGGGAAAGGACTAGTATCAGAAGTTGTATACC
ATCTTAAACAATATCAACGTGTGGTCGAGATCCAGGAATTGACTGGcgaa
aaatcagacatcttttTGGACTACATACAAGAATCGATGCCTGCTGGAGT
CAAAATCGATATCAGTCTAaAACGTTGGGAAAAATTGGTGGAACCCAATC
ACATTATGTTTAGAGAAGAAAACTaactttatgaaatatttctttataaa
tagAAGATTGTATTTTTAAcccgattgatattttttagttaGTAATATTC
TGATTTCTATTCTGGTTGTTTATCTTGCATTATTTCCCGAGTGGTATAGT
GATGTTTAATTTCGTTTCGTTCTTGACTGAAGTGTTATCCTCACGCTTTC
AGAAATGGGATCGATAGA Run BLAST on NCBI protein sequence of TCONS_00017096-protein >TCONS_00017096-protein ID=TCONS_00017096-protein|Name=TCONS_00017096-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp
MEQFCKSCINLRHGLHLARRTFKPTTQRPLLLPTYSQLRSYSIKDRTSER
KYRHGKLIVEHVEDPTLYPFFLMIFSGTDQVVLDAYLHEVKKAAKMVDVN
LTKSFNLPAIEETHKAKREGKGLVSEVVYHLKQYQRVVEIQELTGEKSDI
FLDYIQESMPAGVKIDISLKRWEKLVEPNHIMFREEN Run BLAST on NCBI transcript from alignment at sc0000259:138454..143385+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017096 ID=TCONS_00017096|Name=TCONS_00017096|organism=Clytia hemisphaerica|type=transcript|length=4932bp|location=Sequence derived from alignment at sc0000259:138454..143385+ (Clytia hemisphaerica)
TtctagataaaaatattaaaagtgATCTTAAAAATTGAGAGACAAGATAA
AAGATATTCATAATGGAACAATTTTGCAAAAGTTGCATCAATCTAAGGCA
TGGTTTACATTTAGCAAGAAGAACTTTCAAACCGACCACACAAAGTaata
ttttctaatttaattctatttttattgttcgaGAACAATCTTCTAAATCT
TCTAATcttctaaaaaaaactttatcatttttataatcGGGAAAGATAtg
acattttctttttaaagttaACCAAATTTTGAATGCGTTCAATCACTTTT
CCCAACtctaactttttcatttttttcaggaccactaTTACTCCCCACAT
ACAGTCAACTTCGTTCCTACTCAATCAAAGACAGAACCTCAGAACGTAAA
TATAGACATGGAAAACTGGTAAGAACCGTTTGCTTTATTTTCGTTTTCCA
ATCGTGAAGTAATTTTAAAAGCAGATTAGGGAATAAGTATAGATCTCAtc
ggagtttttaatttttcttaaaaaagtgatgcattgtgggattgtttcag
gagtattacaataaaattccctcgaggaaaaagagatttctattgtaata
ctcccgaaacaatcccacaatgcatcgcttttttagaaaaataaaaacgg
aCGCTTCCGAGAAAATTCTAGTCATCACTAGACTAGAGCCTGCTTTTGGc
taaactttgctttttgataatttttgatgacgctgagtccagtgaagtag
actaggagcatttggcgaggtcgccattttgagaaaaaatgttaaaaatc
taaaTAGTAATAAAACTACATGGCGTTGAGAGAtataataaaaaatgaga
aacatcaataacagatttgcaatcccttattctcaaataaaagcATTgct
tttaccttccaaaaacaactaaaatctggcggactgttttacagtccgcc
taggcaaaagcatattaccatatactaccgggccacttaatcgcgccatc
cagtctatataaatataaaaagctttaagtggaccccgggctagtcTATC
ATTAGTTCTTAAGGGTTTCATTTTCAtgtaagtgttcccgtttcatatca
gacacatgtttcatatcaggacagtgtcttcctattgttatattttgaga
tgatataagcaaaaaaatgtttttctcttcctctttctggccaaccttgc
tccacatccgtgtcaatatcaaaaagcttgtaaattaaaattgatgagta
agcaaacgatatcactcttatttaaaaacaaaacctttaagtgaagtaca
aataaataacaatagaataatCATGATATGGAGTGTTGAGTAGATGGATT
TTACTTGTGATAACTatttatgaaaatgattttctcACCTTTTCATTCAT
TAGATTGTAGAGCATGTGGAAGATCCAACATTGTACCCATTCTTTCTGAT
GATCTTCTCTGGTACCGATCAAGTCGTTCTTGATGCTTATCTCCATGAAG
TTAAAAAAGCTGCCAAAATGGTCGACGTCAATCTTACCAAAAGGTCAGGG
CTTTTGCGAATGTTTGAAGCGAAaattgactaaattttgacaaaaaattt
gcagtcgcttgattttttgatttttagctCAGACATGCATCCATCAACAC
GCCTTCGATTAAAAAATCTATGAAATCTTGACAATGTCGGTACTCAGCTT
TTCAATTTAGGAATAAGTGATAATGTAACCCTGCTAAAGCTTTTCGTTCT
TTagcgtattcatgatatgcaccattacaatgtcttctgGCATTATACCA
TGGAcctaacagctgattggttgtaagtgacgtcaAATCAGTCAGTACAT
cgctttcaaccaatcagctgttgggtccataaaagacattgtaatggtac
atatcatgaatGATACACTTTTTCGAGATTAATacaatgatttttttgac
aTCAAGCAGCATCAAGAATATTGTTTTTTCCATGGTATCAGTATACTTCA
TAGCATTTATTATGGTTTTGTTGTAGTTTCAACTTACCAGCAATCGAAGA
GACGCACAAAGCAAAACGCGAGGGGAAAGGACTAGTATCAGAAGTTGTAT
ACCATCTTAAACAATATCAACGTGTGGTCGAGGTGAGAATCTACAAATCT
TTTCGGAAAccaaatcaaattttcatcgatTCTCCAATcctttgccaaat
ttaaatgaCTTgccaaaagtttcttttttttaaatgaattaacGTAGTGT
TTTCTAGCGTCAACATTATACAATCTCTTACAGTCTTAcagtctttttaa
ctcgaacttGAATGACTCTAAtgactccttaactcgaacaagtttccccg
ttcctttagttaacaataccttataaaccttactccataactcaaaattt
ccttgaCTCGAAAAAATTTGCGTTCCCCGTACAGGTTCCCAGTTATGGAG
ACTTCACTGTAATAGTAAAggtattttttggacctaccttggaggtccta
taaattaacccgtgttcgtccgtccgtccgtccgtccgtccgtccgtccg
tctgttaccagcttttctcaggattggctcattagttttttctgattttt
gggcacaatgatgcaaaatggcaatgcccaaaatgtgacggagcccgatt
ttcggaaaaaaaatttttctggccgaaaatgccggatatatcccggaaaa
actggttttttggcactttctcgagattttatcattagttttttctgatt
ttttgctcaaagatgcgtattagcaatgcccaaaacatggtcgagtccga
ttcttgagaaaaaattttttccggccggaaatatgccggaaatcgccgtt
tttctggattttcattgggctttttccttatagttggttgttttttcatt
taaaaacattattaatagcaatgcccaccatcaagcatgttttaattttc
aataaaattgatttttgaagccggaagtatttcttgaatttctcgagctg
tactttatattttttaatgaaattttgcacactgattcaaaatgacaata
cctaaaatgtgacggagcccgattttcgaaaaacatttttttccggccga
aaatgccggaaatatcccgaaaaactgtttttttggcattttctcgagat
tttatcattagtattttctgattttttgctcaaagatgcgtattaacaat
gcccaaaatatggccgagtccgatttttgccggaaattgccgtttttctg
gattttcattggactttttccttataattggttgttttttctttcaaaaa
cattattaatagcaatgcccaccatcaagtatgtttcaattttcaataaa
attgatttttgaagccggaactattaaaaaatcgccggaacaacctgatt
tcgccggaaagacagtatttcttgaatttttcgagctgtactttatattt
ttttatgaaatttttcacactgatgcaaaatgacaatacctaaaatgtga
cggagcttgattttcaaaaaatatttttttccggccgaaaatgccggaaa
tatgccggaaaaaccggtttttgacattttctctaattttcatccttaat
tttctctgattttttgcacaatgatgcgtattcgcaatgctcaaaaaatg
accgagccggaaatttccgtttttgcagattttcgttggattttttcgtt
ttatgtctttgtttttttcaaacaaaaacattatttataagaatgtccac
gattaagcatggttcaattttcaataaaactgattttgatttcggtacag
gaactttctaaaaatcgccagaacagccgagaatcgccggatttcattaa
tttctcgagttgttcttgttctttattttttcatattttgaccagttatg
tcctatgtgtttcattgtttcaatgttcattgattagtttgataaccagg
taggtccataaaagtatcacttgtttatctCAGATCCAGGAATTGACTGG
cgaaaaatcagacatcttttTGGACTACATACAAGAATCGATGCCTGCTG
GAGTCAAAATCGATATCAGTCTAGTGAGTACTTCTGTTAACTGTATTAAC
TGTGAGATTACAACATTTTTATAGGAAAGAAAGCTCTGACGAACCATTAT
TTGAGAAAAGCACACCGCGGCGAATCTAAAATAGTAACAAATCTGCACAA
AGTTATTCATTTGTACGACTTACTACAATCTCATCCTCCTTTGCGTTAAT
TACTCTTGCGCGTTGATTACTtataatatcaaaagaaaggtaaCAGTTTT
CACGGTTTTCCAATCTTCGAAATTAACTGtgggattggaaatctcttccA
AATTTAAGTTGAAATAAAATGACGTGTGCGACGTGGATCGCTATTGGTCC
ATCTAGGGGTACATCTAGTGTTTTGGCGACGGTCTTGCTTCTTATTCCCA
TAAAtcaggaaaattgaaaattttaagattcTTCGTTAATGGTCAATCAA
TCAACAACCATAACTTTCTAAGGGTTCGCTCCGCATTCTTTATTTTGGTC
ATATCTGGTCCGCATTCTTTAGTTTGGTCATATCTGGTccgcatttttta
ttttgctcaTAAATATCTGTCCAATAACCGATCCTTAACTTCCTTCGAGT
TCTATTTGACACgtctcttcttcttttttatagaAACGTTGGGAAAAATT
GGTGGAACCCAATCACATTATGTTTAGAGAAGAAAACTaactttatgaaa
tatttctttataaatagAAGATTGTATTTTTAAcccgattgatatttttt
agttaGTAATATTCTGATTTCTATTCTGGTTGTTTATCTTGCATTATTTC
CCGAGTGGTATAGTGATGTTTAATTTCGTTTCGTTCTTGACTGAAGTGTT
ATCCTCACGCTTTCAGAAATGGGATCGATAGA Coding sequence (CDS) from alignment at sc0000259:138454..143385+ >TCONS_00017096 ID=TCONS_00017096|Name=TCONS_00017096|organism=Clytia hemisphaerica|type=CDS|length=3384bp|location=Sequence derived from alignment at sc0000259:138454..143385+ (Clytia hemisphaerica)
ATGGAACAATTTTGCAAAAGTTGCATCAATCTAAGGCATGGTTTACATTT
AGCAAGAAGAACTTTCAAACCGACCACACAAAgaccactaTTACTCCCCA
CATACAGTCAACTTCGTTCCTACTCAATCAAAGACAGAACCTCAGAACGT
AAATATAGACATGGAAAACTGATTGTAGAGCATGTGGAAGATCCAACATT
GTACCCATTCTTTCTGATGATCTTCTCTGGTACCGATCAAGTCGTTCTTG
ATGCTTATCTCCATGAAGTTAAAAAAGCTGCCAAAATGGTCGACGTCAAT
CTTACCAAAAGTTTCAACTTACCAGCAATCGAAGAGACGCACAAAGCAAA
ACGCGAGGGGAAAGGACTAGTATCAGAAGTTGTATACCATCTTAAACAAT
ATCAACGTGTGGTCGAGATCCAGGAATTGACTGGcgaaaaatcagacatc
ttttTGGACTACATACAAGAATCGATGCCTGCTGGAGTCAAAATCGATAT
CAGTCTAaAACGTTGGGAAAAATTGGTGGAACCCAATCACATTATGTTTA
GAGAAGAAAACTaaATGGAACAATTTTGCAAAAGTTGCATCAATCTAAGG
CATGGTTTACATTTAGCAAGAAGAACTTTCAAACCGACCACACAAAgacc
actaTTACTCCCCACATACAGTCAACTTCGTTCCTACTCAATCAAAGACA
GAACCTCAGAACGTAAATATAGACATGGAAAACTGATTGTAGAGCATGTG
GAAGATCCAACATTGTACCCATTCTTTCTGATGATCTTCTCTGGTACCGA
TCAAGTCGTTCTTGATGCTTATCTCCATGAAGTTAAAAAAGCTGCCAAAA
TGGTCGACGTCAATCTTACCAAAAGTTTCAACTTACCAGCAATCGAAGAG
ACGCACAAAGCAAAACGCGAGGGGAAAGGACTAGTATCAGAAGTTGTATA
CCATCTTAAACAATATCAACGTGTGGTCGAGATCCAGGAATTGACTGGcg
aaaaatcagacatcttttTGGACTACATACAAGAATCGATGCCTGCTGGA
GTCAAAATCGATATCAGTCTAaAACGTTGGGAAAAATTGGTGGAACCCAA
TCACATTATGTTTAGAGAAGAAAACTaaATGGAACAATTTTGCAAAAGTT
GCATCAATCTAAGGCATGGTTTACATTTAGCAAGAAGAACTTTCAAACCG
ACCACACAAAgaccactaTTACTCCCCACATACAGTCAACTTCGTTCCTA
CTCAATCAAAGACAGAACCTCAGAACGTAAATATAGACATGGAAAACTGA
TTGTAGAGCATGTGGAAGATCCAACATTGTACCCATTCTTTCTGATGATC
TTCTCTGGTACCGATCAAGTCGTTCTTGATGCTTATCTCCATGAAGTTAA
AAAAGCTGCCAAAATGGTCGACGTCAATCTTACCAAAAGTTTCAACTTAC
CAGCAATCGAAGAGACGCACAAAGCAAAACGCGAGGGGAAAGGACTAGTA
TCAGAAGTTGTATACCATCTTAAACAATATCAACGTGTGGTCGAGATCCA
GGAATTGACTGGcgaaaaatcagacatcttttTGGACTACATACAAGAAT
CGATGCCTGCTGGAGTCAAAATCGATATCAGTCTAaAACGTTGGGAAAAA
TTGGTGGAACCCAATCACATTATGTTTAGAGAAGAAAACTaaATGGAACA
ATTTTGCAAAAGTTGCATCAATCTAAGGCATGGTTTACATTTAGCAAGAA
GAACTTTCAAACCGACCACACAAAgaccactaTTACTCCCCACATACAGT
CAACTTCGTTCCTACTCAATCAAAGACAGAACCTCAGAACGTAAATATAG
ACATGGAAAACTGATTGTAGAGCATGTGGAAGATCCAACATTGTACCCAT
TCTTTCTGATGATCTTCTCTGGTACCGATCAAGTCGTTCTTGATGCTTAT
CTCCATGAAGTTAAAAAAGCTGCCAAAATGGTCGACGTCAATCTTACCAA
AAGTTTCAACTTACCAGCAATCGAAGAGACGCACAAAGCAAAACGCGAGG
GGAAAGGACTAGTATCAGAAGTTGTATACCATCTTAAACAATATCAACGT
GTGGTCGAGATCCAGGAATTGACTGGcgaaaaatcagacatcttttTGGA
CTACATACAAGAATCGATGCCTGCTGGAGTCAAAATCGATATCAGTCTAa
AACGTTGGGAAAAATTGGTGGAACCCAATCACATTATGTTTAGAGAAGAA
AACTaaATGGAACAATTTTGCAAAAGTTGCATCAATCTAAGGCATGGTTT
ACATTTAGCAAGAAGAACTTTCAAACCGACCACACAAAgaccactaTTAC
TCCCCACATACAGTCAACTTCGTTCCTACTCAATCAAAGACAGAACCTCA
GAACGTAAATATAGACATGGAAAACTGATTGTAGAGCATGTGGAAGATCC
AACATTGTACCCATTCTTTCTGATGATCTTCTCTGGTACCGATCAAGTCG
TTCTTGATGCTTATCTCCATGAAGTTAAAAAAGCTGCCAAAATGGTCGAC
GTCAATCTTACCAAAAGTTTCAACTTACCAGCAATCGAAGAGACGCACAA
AGCAAAACGCGAGGGGAAAGGACTAGTATCAGAAGTTGTATACCATCTTA
AACAATATCAACGTGTGGTCGAGATCCAGGAATTGACTGGcgaaaaatca
gacatcttttTGGACTACATACAAGAATCGATGCCTGCTGGAGTCAAAAT
CGATATCAGTCTAaAACGTTGGGAAAAATTGGTGGAACCCAATCACATTA
TGTTTAGAGAAGAAAACTaaATGGAACAATTTTGCAAAAGTTGCATCAAT
CTAAGGCATGGTTTACATTTAGCAAGAAGAACTTTCAAACCGACCACACA
AAgaccactaTTACTCCCCACATACAGTCAACTTCGTTCCTACTCAATCA
AAGACAGAACCTCAGAACGTAAATATAGACATGGAAAACTGATTGTAGAG
CATGTGGAAGATCCAACATTGTACCCATTCTTTCTGATGATCTTCTCTGG
TACCGATCAAGTCGTTCTTGATGCTTATCTCCATGAAGTTAAAAAAGCTG
CCAAAATGGTCGACGTCAATCTTACCAAAAGTTTCAACTTACCAGCAATC
GAAGAGACGCACAAAGCAAAACGCGAGGGGAAAGGACTAGTATCAGAAGT
TGTATACCATCTTAAACAATATCAACGTGTGGTCGAGATCCAGGAATTGA
CTGGcgaaaaatcagacatcttttTGGACTACATACAAGAATCGATGCCT
GCTGGAGTCAAAATCGATATCAGTCTAaAACGTTGGGAAAAATTGGTGGA
ACCCAATCACATTATGTTTAGAGAAGAAAACTaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017096-exon-sc0000259-1491911889:138454..138597 | TCONS_00017096-exon-sc0000259-1491911889:138454..138597 | Clytia hemisphaerica | exon |
| TCONS_00017096-exon-sc0000259-1510915933:138454..138597 | TCONS_00017096-exon-sc0000259-1510915933:138454..138597 | Clytia hemisphaerica | exon |
| TCONS_00017096-exon-sc0000259-1575043694:138454..138597 | TCONS_00017096-exon-sc0000259-1575043694:138454..138597 | Clytia hemisphaerica | exon |
| TCONS_00017096-exon-sc0000259-1491911889:138783..138871 | TCONS_00017096-exon-sc0000259-1491911889:138783..138871 | Clytia hemisphaerica | exon |
| TCONS_00017096-exon-sc0000259-1510915933:138783..138871 | TCONS_00017096-exon-sc0000259-1510915933:138783..138871 | Clytia hemisphaerica | exon |
| TCONS_00017096-exon-sc0000259-1575043694:138783..138871 | TCONS_00017096-exon-sc0000259-1575043694:138783..138871 | Clytia hemisphaerica | exon |
| TCONS_00017096-exon-sc0000259-1491911889:139857..139996 | TCONS_00017096-exon-sc0000259-1491911889:139857..139996 | Clytia hemisphaerica | exon |
| TCONS_00017096-exon-sc0000259-1510915933:139857..139996 | TCONS_00017096-exon-sc0000259-1510915933:139857..139996 | Clytia hemisphaerica | exon |
| TCONS_00017096-exon-sc0000259-1575043694:139857..139996 | TCONS_00017096-exon-sc0000259-1575043694:139857..139996 | Clytia hemisphaerica | exon |
| TCONS_00017096-exon-sc0000259-1491911889:140480..140585 | TCONS_00017096-exon-sc0000259-1491911889:140480..140585 | Clytia hemisphaerica | exon |
| TCONS_00017096-exon-sc0000259-1510915933:140480..140585 | TCONS_00017096-exon-sc0000259-1510915933:140480..140585 | Clytia hemisphaerica | exon |
| TCONS_00017096-exon-sc0000259-1575043694:140480..140585 | TCONS_00017096-exon-sc0000259-1575043694:140480..140585 | Clytia hemisphaerica | exon |
| TCONS_00017096-exon-sc0000259-1491911889:142437..142526 | TCONS_00017096-exon-sc0000259-1491911889:142437..142526 | Clytia hemisphaerica | exon |
| TCONS_00017096-exon-sc0000259-1510915933:142437..142526 | TCONS_00017096-exon-sc0000259-1510915933:142437..142526 | Clytia hemisphaerica | exon |
| TCONS_00017096-exon-sc0000259-1575043694:142437..142526 | TCONS_00017096-exon-sc0000259-1575043694:142437..142526 | Clytia hemisphaerica | exon |
| TCONS_00017096-exon-sc0000259-1491911889:143137..143385 | TCONS_00017096-exon-sc0000259-1491911889:143137..143385 | Clytia hemisphaerica | exon |
| TCONS_00017096-exon-sc0000259-1510915933:143137..143385 | TCONS_00017096-exon-sc0000259-1510915933:143137..143385 | Clytia hemisphaerica | exon |
| TCONS_00017096-exon-sc0000259-1575043694:143137..143385 | TCONS_00017096-exon-sc0000259-1575043694:143137..143385 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000259 | supercontig | sc0000259:138454..143385 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR027486 | Ribosomal_S10_dom |
Blast
The following BLAST results are available for this feature:
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