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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017087 ID=TCONS_00017087|Name=TCONS_00017087|organism=Clytia hemisphaerica|type=transcript|length=1756bp
ATATTTCGAAAGATTATTAGAGTAGGTTTTACAGAGAATTTGTATAATGC
ATATAAAATAGAAGTAACGACTATATAACTGCGCTGGTTTATCGGTTATG
AAGTGAAATAAAGTTGCCTTGCGTAAACCATATCTCAGATTCAAATATTT
GTTTCTCGCTCATCATCAAAATTATTCAAAGGGAAAATTGGATCCACTTT
TGTATCGTAAAAGCAAAGTAGACTTCCGTCATCATAATAAGCCGCCACAG
GCTGCAAGGGCGGGTTTTTAGTGTCTATTTTGGTGGAAACGGGCGTGCTT
GTGATAAGGTCATGTAATTGTTTCGCTTTGTTTAATTCCTCCATTAAATC
TAACGTTAGAAGTTCATCACTTCCGTTTTCTTCTGTTGTCATGGTTTCTG
GGTCTGTCGAAATGCATTCTGGAGATGAATCTCTTGATCCTTCACTAAGA
TTTTCGTTCTGTGATTGATCGCTTAAACTGCTCTGTAAATTGACTTCTTC
GTTGATAACTTCGTTCGGTAAAGTAACAGGCATAAAAGCATCTAACGGAA
CGTAGCCGTTAGATAAACTGTTGTTGTTCAATAACGGAGATCCTTGATGG
CTCAATCCAATGACGTCACTTTCTTTCCTTAGCAAGAGTGGCGTCGAAAA
CTTGCGACGGGAGTGGGCCGAGGCCGTTAAAGGCGAATCTTCGTGCCAAG
GAGAGGAGCTCGATTTACGTCttgctttaattttttcttgaaatttatgc
aatgttgttgttgttgtcactGACAACCTTCGCATCATACGAGGTCGACA
AATCCAAAATGGTAGAGTATACAGTGCCTTACGGTATTCTTCACTCATGT
AAAATAACACGAAAGGATTTGTGACAACTTGTCCGTAAAAGAGAGCCAAC
AGaaagttcaaaaatttcatataTTCAGGGTCATCTGGTACAATTTTTTG
AGTAAACAAGAAGAAATAAATATGAATTGGTAACGTTAAAGCTCCGAATG
TTAAAAACATGGTCATTAATGCTCTGTTCATACGTCGGCTTTTATTTCGT
CGATTTTGTAAATCAAATTCCGACATATGTCCGTACATCTGTTTAACGTT
TTTTGATACAATCCGGTTGATTTTGAAGTACGCGAATCCGGTCGATAGCA
TAGGGAAAACATAAGTTAAAAAGAACTTGATCAACTCGTAGCCAAAGTCC
CTGTCTGGATCTGGGATTCGCATTAAACAATAGAGTTGTCCTCCTTGTAC
CACTAAACCAGGTCCCGGCCCCAAGAGGCCGGGCATCAGGGGCAAAGCCA
TTATAAGAAAGGGTACAAGCCATACCAAAACAAGTGTTATTCGAACGTGC
TTTATTTTGATTGTGCGGCCTGTAAGCGCACTTTTAAGGACCGCGAAGCG
TGCCACGCCTAATGATGTATGTGTCAGGACGCAAACACCAGCGAACATCT
CAAGTATGGGTTGAACATACTGGCAGGTGAATTCACCGAAGGGCCAGTCC
ATATGTGGAATAATTGTATTGAATGGAATaacaatcaaaacaatgaaTAA
ATCACATACGCATAAATTAAAAACGAACCAATTGGTAATGGTCTGCATAC
GTTTTTGACGAATAATTATGACGGAGATGAATAAATTACCGACCAAACCA
CACACCAAAGTGAATGACGTCAGAATTAGAAGTATAAGTTCGAAATCTGA
CATATGTTTCCCCATGATGTTCATAACAAATTATATACAGATATTCTAAA
TGTTCT Run BLAST on NCBI protein sequence of TCONS_00017087-protein >TCONS_00017087-protein ID=TCONS_00017087-protein|Name=TCONS_00017087-protein|organism=Clytia hemisphaerica|type=polypeptide|length=527bp
MNIMGKHMSDFELILLILTSFTLVCGLVGNLFISVIIIRQKRMQTITNWF
VFNLCVCDLFIVLIVIPFNTIIPHMDWPFGEFTCQYVQPILEMFAGVCVL
THTSLGVARFAVLKSALTGRTIKIKHVRITLVLVWLVPFLIMALPLMPGL
LGPGPGLVVQGGQLYCLMRIPDPDRDFGYELIKFFLTYVFPMLSTGFAYF
KINRIVSKNVKQMYGHMSEFDLQNRRNKSRRMNRALMTMFLTFGALTLPI
HIYFFLFTQKIVPDDPEYMKFLNFLLALFYGQVVTNPFVLFYMSEEYRKA
LYTLPFWICRPRMMRRLSVTTTTTLHKFQEKIKARRKSSSSPWHEDSPLT
ASAHSRRKFSTPLLLRKESDVIGLSHQGSPLLNNNSLSNGYVPLDAFMPV
TLPNEVINEEVNLQSSLSDQSQNENLSEGSRDSSPECISTDPETMTTEEN
GSDELLTLDLMEELNKAKQLHDLITSTPVSTKIDTKNPPLQPVAAYYDDG
SLLCFYDTKVDPIFPLNNFDDERETNI Run BLAST on NCBI transcript from alignment at sc0000257:239498..241253 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017087 ID=TCONS_00017087|Name=TCONS_00017087|organism=Clytia hemisphaerica|type=transcript|length=1756bp|location=Sequence derived from alignment at sc0000257:239498..241253 (Clytia hemisphaerica)
AGAACATTTAGAATATCTGTATATAATTTGTTATGAACATCATGGGGAAA
CATATGTCAGATTTCGAACTTATACTTCTAATTCTGACGTCATTCACTTT
GGTGTGTGGTTTGGTCGGTAATTTATTCATCTCCGTCATAATTATTCGTC
AAAAACGTATGCAGACCATTACCAATTGGTTCGTTTTTAATTTATGCGTA
TGTGATTTAttcattgttttgattgttATTCCATTCAATACAATTATTCC
ACATATGGACTGGCCCTTCGGTGAATTCACCTGCCAGTATGTTCAACCCA
TACTTGAGATGTTCGCTGGTGTTTGCGTCCTGACACATACATCATTAGGC
GTGGCACGCTTCGCGGTCCTTAAAAGTGCGCTTACAGGCCGCACAATCAA
AATAAAGCACGTTCGAATAACACTTGTTTTGGTATGGCTTGTACCCTTTC
TTATAATGGCTTTGCCCCTGATGCCCGGCCTCTTGGGGCCGGGACCTGGT
TTAGTGGTACAAGGAGGACAACTCTATTGTTTAATGCGAATCCCAGATCC
AGACAGGGACTTTGGCTACGAGTTGATCAAGTTCTTTTTAACTTATGTTT
TCCCTATGCTATCGACCGGATTCGCGTACTTCAAAATCAACCGGATTGTA
TCAAAAAACGTTAAACAGATGTACGGACATATGTCGGAATTTGATTTACA
AAATCGACGAAATAAAAGCCGACGTATGAACAGAGCATTAATGACCATGT
TTTTAACATTCGGAGCTTTAACGTTACCAATTCATATTTATTTCTTCTTG
TTTACTCAAAAAATTGTACCAGATGACCCTGAAtatatgaaatttttgaa
ctttCTGTTGGCTCTCTTTTACGGACAAGTTGTCACAAATCCTTTCGTGT
TATTTTACATGAGTGAAGAATACCGTAAGGCACTGTATACTCTACCATTT
TGGATTTGTCGACCTCGTATGATGCGAAGGTTGTCagtgacaacaacaac
aacattgcataaatttcaagaaaaaattaaagcaaGACGTAAATCGAGCT
CCTCTCCTTGGCACGAAGATTCGCCTTTAACGGCCTCGGCCCACTCCCGT
CGCAAGTTTTCGACGCCACTCTTGCTAAGGAAAGAAAGTGACGTCATTGG
ATTGAGCCATCAAGGATCTCCGTTATTGAACAACAACAGTTTATCTAACG
GCTACGTTCCGTTAGATGCTTTTATGCCTGTTACTTTACCGAACGAAGTT
ATCAACGAAGAAGTCAATTTACAGAGCAGTTTAAGCGATCAATCACAGAA
CGAAAATCTTAGTGAAGGATCAAGAGATTCATCTCCAGAATGCATTTCGA
CAGACCCAGAAACCATGACAACAGAAGAAAACGGAAGTGATGAACTTCTA
ACGTTAGATTTAATGGAGGAATTAAACAAAGCGAAACAATTACATGACCT
TATCACAAGCACGCCCGTTTCCACCAAAATAGACACTAAAAACCCGCCCT
TGCAGCCTGTGGCGGCTTATTATGATGACGGAAGTCTACTTTGCTTTTAC
GATACAAAAGTGGATCCAATTTTCCCTTTGAATAATTTTGATGATGAGCG
AGAAACAAATATTTGAATCTGAGATATGGTTTACGCAAGGCAACTTTATT
TCACTTCATAACCGATAAACCAGCGCAGTTATATAGTCGTTACTTCTATT
TTATATGCATTATACAAATTCTCTGTAAAACCTACTCTAATAATCTTTCG
AAATAT Coding sequence (CDS) from alignment at sc0000257:239498..241253 >TCONS_00017087 ID=TCONS_00017087|Name=TCONS_00017087|organism=Clytia hemisphaerica|type=CDS|length=1584bp|location=Sequence derived from alignment at sc0000257:239498..241253 (Clytia hemisphaerica)
ATGAACATCATGGGGAAACATATGTCAGATTTCGAACTTATACTTCTAAT
TCTGACGTCATTCACTTTGGTGTGTGGTTTGGTCGGTAATTTATTCATCT
CCGTCATAATTATTCGTCAAAAACGTATGCAGACCATTACCAATTGGTTC
GTTTTTAATTTATGCGTATGTGATTTAttcattgttttgattgttATTCC
ATTCAATACAATTATTCCACATATGGACTGGCCCTTCGGTGAATTCACCT
GCCAGTATGTTCAACCCATACTTGAGATGTTCGCTGGTGTTTGCGTCCTG
ACACATACATCATTAGGCGTGGCACGCTTCGCGGTCCTTAAAAGTGCGCT
TACAGGCCGCACAATCAAAATAAAGCACGTTCGAATAACACTTGTTTTGG
TATGGCTTGTACCCTTTCTTATAATGGCTTTGCCCCTGATGCCCGGCCTC
TTGGGGCCGGGACCTGGTTTAGTGGTACAAGGAGGACAACTCTATTGTTT
AATGCGAATCCCAGATCCAGACAGGGACTTTGGCTACGAGTTGATCAAGT
TCTTTTTAACTTATGTTTTCCCTATGCTATCGACCGGATTCGCGTACTTC
AAAATCAACCGGATTGTATCAAAAAACGTTAAACAGATGTACGGACATAT
GTCGGAATTTGATTTACAAAATCGACGAAATAAAAGCCGACGTATGAACA
GAGCATTAATGACCATGTTTTTAACATTCGGAGCTTTAACGTTACCAATT
CATATTTATTTCTTCTTGTTTACTCAAAAAATTGTACCAGATGACCCTGA
AtatatgaaatttttgaactttCTGTTGGCTCTCTTTTACGGACAAGTTG
TCACAAATCCTTTCGTGTTATTTTACATGAGTGAAGAATACCGTAAGGCA
CTGTATACTCTACCATTTTGGATTTGTCGACCTCGTATGATGCGAAGGTT
GTCagtgacaacaacaacaacattgcataaatttcaagaaaaaattaaag
caaGACGTAAATCGAGCTCCTCTCCTTGGCACGAAGATTCGCCTTTAACG
GCCTCGGCCCACTCCCGTCGCAAGTTTTCGACGCCACTCTTGCTAAGGAA
AGAAAGTGACGTCATTGGATTGAGCCATCAAGGATCTCCGTTATTGAACA
ACAACAGTTTATCTAACGGCTACGTTCCGTTAGATGCTTTTATGCCTGTT
ACTTTACCGAACGAAGTTATCAACGAAGAAGTCAATTTACAGAGCAGTTT
AAGCGATCAATCACAGAACGAAAATCTTAGTGAAGGATCAAGAGATTCAT
CTCCAGAATGCATTTCGACAGACCCAGAAACCATGACAACAGAAGAAAAC
GGAAGTGATGAACTTCTAACGTTAGATTTAATGGAGGAATTAAACAAAGC
GAAACAATTACATGACCTTATCACAAGCACGCCCGTTTCCACCAAAATAG
ACACTAAAAACCCGCCCTTGCAGCCTGTGGCGGCTTATTATGATGACGGA
AGTCTACTTTGCTTTTACGATACAAAAGTGGATCCAATTTTCCCTTTGAA
TAATTTTGATGATGAGCGAGAAACAAATATTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017087-exon-sc0000257-1491911889:239498..241253 | TCONS_00017087-exon-sc0000257-1491911889:239498..241253 | Clytia hemisphaerica | exon |
| TCONS_00017087-exon-sc0000257-1510915933:239498..241253 | TCONS_00017087-exon-sc0000257-1510915933:239498..241253 | Clytia hemisphaerica | exon |
| TCONS_00017087-exon-sc0000257-1575043694:239498..241253 | TCONS_00017087-exon-sc0000257-1575043694:239498..241253 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000257 | supercontig | sc0000257:239498..241253 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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