TCONS_00017087-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00017087-protein
Unique Name	TCONS_00017087-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	527

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00017087-protein ID=TCONS_00017087-protein|Name=TCONS_00017087-protein|organism=Clytia hemisphaerica|type=polypeptide|length=527bp
MNIMGKHMSDFELILLILTSFTLVCGLVGNLFISVIIIRQKRMQTITNWF
VFNLCVCDLFIVLIVIPFNTIIPHMDWPFGEFTCQYVQPILEMFAGVCVL
THTSLGVARFAVLKSALTGRTIKIKHVRITLVLVWLVPFLIMALPLMPGL
LGPGPGLVVQGGQLYCLMRIPDPDRDFGYELIKFFLTYVFPMLSTGFAYF
KINRIVSKNVKQMYGHMSEFDLQNRRNKSRRMNRALMTMFLTFGALTLPI
HIYFFLFTQKIVPDDPEYMKFLNFLLALFYGQVVTNPFVLFYMSEEYRKA
LYTLPFWICRPRMMRRLSVTTTTTLHKFQEKIKARRKSSSSPWHEDSPLT
ASAHSRRKFSTPLLLRKESDVIGLSHQGSPLLNNNSLSNGYVPLDAFMPV
TLPNEVINEEVNLQSSLSDQSQNENLSEGSRDSSPECISTDPETMTTEEN
GSDELLTLDLMEELNKAKQLHDLITSTPVSTKIDTKNPPLQPVAAYYDDG
SLLCFYDTKVDPIFPLNNFDDERETNI

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_009552	XLOC_009552	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00017087	TCONS_00017087	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000276	GPCR_Rhodpsn
IPR017452	GPCR_Rhodpsn_7TM

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000276	G protein-coupled receptor, rhodopsin-like	PRINTS	PR00237	GPCRRHODOPSN	coord: 14..38 score: 21.88 coord: 180..203 score: 18.83 coord: 232..256 score: 19.38 coord: 47..68 score: 30.62 coord: 272..298 score: 20.42 coord: 126..147 score: 19.96
IPR000276	G protein-coupled receptor, rhodopsin-like	PFAM	PF00001	7tm_1	coord: 29..289 e-value: 1.1E-26 score: 93.6
None	No IPR available	GENE3D	1.20.1070.10		coord: 5..349 e-value: 2.4E-48 score: 164.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 331..354
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 415..452
None	No IPR available	SUPERFAMILY	81321	Family A G protein-coupled receptor-like	coord: 11..319
IPR017452	GPCR, rhodopsin-like, 7TM	PROSITE	PS50262	G_PROTEIN_RECEP_F1_2	coord: 29..290 score: 24.143

Blast

[Close]

BLAST of TCONS_00017087-protein vs. Swiss-Prot (Human)
Match: OX2R (Orexin receptor type 2 OS=Homo sapiens GN=HCRTR2 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.781e-17
Identity = 76/338 (22.49%), Postives = 140/338 (41.42%), Query Frame = 0

Query:    7 HMSDFELILLILTSFTLVCGLVGNLFISVIIIRQKRMQTITNWFVFNLCVCDLFIVLIVIPFNTIIPHMD-WPFGEFTCQYVQPILEMFAGVCVLTHTSLGVARFAVLKSALTGRTIKIKHVRITLVLVWLVPFLIM--------ALPLMPGLLGPGPGLVV----QGGQLYCLMRIPDPDRDFGYELIKFFLTYVFPMLSTGFAYFKINR------------IVSKNVKQMY-------------GHMSEFDLQNRRNKSRRMN-RALMTMFLTFGALTLPIHI------YFFLFTQKIVPDDPEYMKFLNFLLALFYGQVVTNPFVLFYMSEEYRK 299
            H  ++E +L+       V  L+GN+ + V + +   M+T+TN+F+ NL + D+ + +  +P   ++   + W FG+  C+ +  +  +   V VLT + + + R+  +   L  ++   K  R ++V++W+V  +IM           + PGL        V     GG++Y  M          Y +  F +TY+ P+     AY +I R            +V +  K +                MS    + ++ ++RR   R LM + L F    LPI I       F +F      D      +  F   L Y     NP +  ++S ++R+
Sbjct:   49 HPKEYEWVLIAGYIIVFVVALIGNVLVCVAVWKNHHMRTVTNYFIVNLSLADVLVTITCLPATLVVDITETWFFGQSLCKVIPYLQTVSVSVSVLTLSCIALDRWYAICHPLMFKSTA-KRARNSIVIIWIVSCIIMIPQAIVMECSTVFPGLANKTTLFTVCDERWGGEIYPKM----------YHICFFLVTYMAPLCLMVLAYLQIFRKLWCRQIPGTSSVVQRKWKPLQPVSQPRGPGQPTKSRMSAVAAEIKQIRARRKTARMLMIVLLVFAICYLPISILNVLKRVFGMFAH--TEDRETVYAWFTFSHWLVYANSAANPIIYNFLSGKFRE 373

The following BLAST results are available for this feature:

BLAST of TCONS_00017087-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00017087-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
OX2R	1.781e-17	22.49	Orexin receptor type 2 OS=Homo sapiens GN=HCRTR2 P...	[more]

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TCONS_00017087-protein (polypeptide) - C. hemisphaerica