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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017032 ID=TCONS_00017032|Name=TCONS_00017032|organism=Clytia hemisphaerica|type=transcript|length=5169bpRun BLAST on NCBI protein sequence of TCONS_00017032-protein >TCONS_00017032-protein ID=TCONS_00017032-protein|Name=TCONS_00017032-protein|organism=Clytia hemisphaerica|type=polypeptide|length=737bp MMSADIPYKCSAARSLFVVRSLSDLPNELSIKILEYFNAKELISLRLVNNRun BLAST on NCBI transcript from alignment at sc0000257:174905..187598+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017032 ID=TCONS_00017032|Name=TCONS_00017032|organism=Clytia hemisphaerica|type=transcript|length=12694bp|location=Sequence derived from alignment at sc0000257:174905..187598+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000257:174905..187598+ >TCONS_00017032 ID=TCONS_00017032|Name=TCONS_00017032|organism=Clytia hemisphaerica|type=CDS|length=26568bp|location=Sequence derived from alignment at sc0000257:174905..187598+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00017032 vs. Swiss-Prot (Human)
Match: CCNF (Cyclin-F OS=Homo sapiens GN=CCNF PE=1 SV=2) HSP 1 Score: 254.988 bits (650), Expect = 3.223e-70 Identity = 160/499 (32.06%), Postives = 278/499 (55.71%), Query Frame = 3
Query: 1128 LPNELSIKILEYFNAKELISLRLVNNHFKNLIDGTPSIWSRVSYQNMWPSTQKDYSLFRRGSNHGNVESLTKLGLSHLYHYNLTVGEEKNKKDVQEHSIKAANYLHNLD-LNIHPNKPLTWMLIRPPWSMSKSICLKHLVHTQMLTLKESKMN--GPLCYNIGRIFNLESDNNSNKEKSTENFLQSCDLRCSHAKFELLLARKNEISADAGKTLQWVRELRECAMTGNKETIFELVGFALSNNSLFIEDMLNMNKLSKNLFSNCQCVRVDKLELYQPKINSLMRCILVDWLAEVAYMKDMSHEVLHAAVSYVDRYLMSRVVERTKLQLLGISCLLLAAKSHYDARQVHILTVRESSWLTDQTYQYEDVVKMMGEIIGAFAGDLWKPTSWNYLHTILALPMIDDTWKSCCHYVHDLTLQFTLFGSYKPSVVACSSLFLAGLILDRDNSWPSELEEVTGFHVKDIANCASLIHYKSFTCSSMKDDRGLPLESIKARYRSQR 2615
LP ++ IL++ + ++++++R V++ K+L+D S+W+ S+Q +WPS + LF R + GN E+ KLG+++LY+ L+V +E + + +KA+ + + LN+ P W+ IRPPWS+S S C K +VH + + + + + +GR+ +L D ++++ + F ++ C + + L + + +D G+ L R+LR+ A G E L + N L +E + +++ LF Q V ++ Q +N MR IL+DWL EVA MKD + LH V VDRYL R+V R +LQLLGI+C+++ + + +++ ILT+RE+ WLTD TY+YED+V+MMGEI+ A G + PT +Y +L L ++ + C ++ +L+L T +Y P+ +A ++L LA L + W ++L ++TGF +D+ C +H K F + KD R + L ++K R+ +R
Sbjct: 35 LPEDVLFHILKWLSVEDILAVRAVHSQLKDLVDNHASVWACASFQELWPSP-GNLKLFERAAEKGNFEAAVKLGIAYLYNEGLSVSDEAR---AEVNGLKASRFFSLAERLNVGA-APFIWLFIRPPWSVSGSCC-KAVVHESLRAECQLQRTHKASILHCLGRVLSLFEDEE-KQQQAHDLFEEAAHQGCLTSSYLLWESDRRTDVSDPGRCLHSFRKLRDYAAKGCWEAQLSLAKACANANQLGLE-VRASSEIVCQLFQASQAVSKQQVFSVQKGLNDTMRYILIDWLVEVATMKDFTSLCLHLTVECVDRYLRRRLVPRYRLQLLGIACMVICTR--FISKE--ILTIREAVWLTDNTYKYEDLVRMMGEIVSALEGKIRVPTVVDYKEVLLTLVPVELRTQHLCSFLCELSLLHTSLSAYAPARLAAAALLLARLTHGQTQPWTTQLWDLTGFSYEDLIPCVLSLHKKCFHDDAPKDYRQVSLTAVKQRFEDKR 521 The following BLAST results are available for this feature:
BLAST of TCONS_00017032 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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