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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016986 ID=TCONS_00016986|Name=TCONS_00016986|organism=Clytia hemisphaerica|type=transcript|length=1806bp
TTCAGTGATGTTTATGTGCTTACAAAAATATTGCTATTCAAATTATGTGA
GAAATATGATACAAACGTTTTGAACAAACTGTAAAAGAGGATTGAGAAAG
CTCTTGAGAAGGGGGATTAgacttgttttaaacaaaaacaatcACAAATC
GTGTTTCAATCACTATTTAAATGGAGATTCCTTTGTATGAGATATCAGCA
AATAAGGTAATGTCATAGTTAAAATGACAGATTATAGCAGGACGACTTAA
TGGATTTTTAGTAacctagaaaaaataaaatgtaaaaaatgcatccaaaa
aataaagaaaacatccaattttgaaaaagtaccaaaaaaaaatttctgta
aaTTATCCAGTAAAGGTTCAGATACTCAATATCATATTTAGTTTGTAAAA
TCTTTCCAACATGAGCACCATCCATTATCACTTACATTTTTATTCAACTG
TCCAACAAGAGCCAACATTGGTTGGAAAAATCCTTCAGTTCTAGTCCAAC
TCCCATCATATCAAGATGGTTTAGATGTCGAAATCGCTATCTTCTTCTTC
AGACTCTTCTTCTTCGGATTCTTCTTCAGACTCTTCGGCTGgttcttctt
tcttctcttcTGTTTTAGGTGTGTTCGCCCATGGatcatcatcttcatct
tcgTATTTGTTGCGACGTCCGAAACGACTGGTTggttcttcttcttcctc
ctccttttcttcttcttcttcatcttctttctcagattcttcctctttgT
CTGACTCAGATTTCGTTTCTTCCGCTGGCTTGGGTGGTGCTTCAGTTACT
TTGGGGATTTCGATTTTACCAGCACCACCGAATTTGGACATGAGATCAAC
GGGTTCGTTGGATTTCAGTGAGCCATCGTCATCACCAAGATTTGCGTATT
CATCTTCATCAGCGACGGCGTCCATGTCCAACATTTCTTGTTCGATCTTT
TCACGTTTCTCTTTCCAGGTGTTGATTTCGTTGGTGGTTTCCAGAATGTT
GCGTTCCATTACACCGCAACTACGTTCAGCAGCTTCTGCACGAACTTCTG
CTTCTTTGAATTGACCCTCCAAGAAACGACGTTTTTCTTCGTTCAATTCT
TCGCGTTCTGAAGATTCTCCTTCCCGTTCTTCTAATTCGTTCAAACTTTT
ACCAGCGTTCTCGATCGTTTCTTCCAATAACGCTACACGTTTTTCTAAAG
TGTCTGCTTTATCTTTGACTTTTTCAGTATCACGATTGACGACAACTACC
TTACGTTGAGCTTCGATGAATTTGGTTTCGTTAGTTTCCAATGTTCGTTT
AGCTTCTTTGGTATCTTCTTCAAGAGTGTTAACGCGTTCATCTTGTGCAC
TTTCCACCTCCTCAAGCTCGTTTCTTTTCTGTTCAAAACCTTCTGTGGTT
TCTTCTGCTTGCTTTAGCTTAGTCTCAGCAGTCGAGCAACGTTCTGTGGC
ATCTTCAAGCTCTTTTTGCAAGAGTTGAATTCTCCGCTCCGCACTGGCCA
ATTCACCTTCTGATTTCTCTAACCGAGCTAAAGCTTCAACGATGCTATGT
TTTGCATCAAGTTTCCTCTGGTCAGCATTATCAATTAATTCGGTGATATT
ATgaagttttttcttcaaattgacCAACTTTTCATCACTCAtccttcttt
gatttttttcttagtatttgatgtttctttattttttagacaGATTCTGA
AAAATATAACATGGAATAGATTGGTTAAACATTGATCATAGACGATAACT
CGTGACATCAAAATCTAAACTGATGGAATCTTGTCAGATTTCTAATAAAC
ACCGAG Run BLAST on NCBI protein sequence of TCONS_00016986-protein >TCONS_00016986-protein ID=TCONS_00016986-protein|Name=TCONS_00016986-protein|organism=Clytia hemisphaerica|type=polypeptide|length=373bp
MSDEKLVNLKKKLHNITELIDNADQRKLDAKHSIVEALARLEKSEGELAS
AERRIQLLQKELEDATERCSTAETKLKQAEETTEGFEQKRNELEEVESAQ
DERVNTLEEDTKEAKRTLETNETKFIEAQRKVVVVNRDTEKVKDKADTLE
KRVALLEETIENAGKSLNELEEREGESSEREELNEEKRRFLEGQFKEAEV
RAEAAERSCGVMERNILETTNEINTWKEKREKIEQEMLDMDAVADEDEYA
NLGDDDGSLKSNEPVDLMSKFGGAGKIEIPKVTEAPPKPAEETKSESDKE
EESEKEDEEEEEKEEEEEEPTSRFGRRNKYEDEDDDPWANTPKTEEKKEE
PAEESEEESEEEESEEEDSDFDI Run BLAST on NCBI transcript from alignment at sc0000255:128169..129974 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016986 ID=TCONS_00016986|Name=TCONS_00016986|organism=Clytia hemisphaerica|type=transcript|length=1806bp|location=Sequence derived from alignment at sc0000255:128169..129974 (Clytia hemisphaerica)
CTCGGTGTTTATTAGAAATCTGACAAGATTCCATCAGTTTAGATTTTGAT
GTCACGAGTTATCGTCTATGATCAATGTTTAACCAATCTATTCCATGTTA
TATTTTTCAGAATCtgtctaaaaaataaagaaacatcaaatactaagaaa
aaaatcaaagaaggaTGAGTGATGAAAAGTTGgtcaatttgaagaaaaaa
cttcATAATATCACCGAATTAATTGATAATGCTGACCAGAGGAAACTTGA
TGCAAAACATAGCATCGTTGAAGCTTTAGCTCGGTTAGAGAAATCAGAAG
GTGAATTGGCCAGTGCGGAGCGGAGAATTCAACTCTTGCAAAAAGAGCTT
GAAGATGCCACAGAACGTTGCTCGACTGCTGAGACTAAGCTAAAGCAAGC
AGAAGAAACCACAGAAGGTTTTGAACAGAAAAGAAACGAGCTTGAGGAGG
TGGAAAGTGCACAAGATGAACGCGTTAACACTCTTGAAGAAGATACCAAA
GAAGCTAAACGAACATTGGAAACTAACGAAACCAAATTCATCGAAGCTCA
ACGTAAGGTAGTTGTCGTCAATCGTGATACTGAAAAAGTCAAAGATAAAG
CAGACACTTTAGAAAAACGTGTAGCGTTATTGGAAGAAACGATCGAGAAC
GCTGGTAAAAGTTTGAACGAATTAGAAGAACGGGAAGGAGAATCTTCAGA
ACGCGAAGAATTGAACGAAGAAAAACGTCGTTTCTTGGAGGGTCAATTCA
AAGAAGCAGAAGTTCGTGCAGAAGCTGCTGAACGTAGTTGCGGTGTAATG
GAACGCAACATTCTGGAAACCACCAACGAAATCAACACCTGGAAAGAGAA
ACGTGAAAAGATCGAACAAGAAATGTTGGACATGGACGCCGTCGCTGATG
AAGATGAATACGCAAATCTTGGTGATGACGATGGCTCACTGAAATCCAAC
GAACCCGTTGATCTCATGTCCAAATTCGGTGGTGCTGGTAAAATCGAAAT
CCCCAAAGTAACTGAAGCACCACCCAAGCCAGCGGAAGAAACGAAATCTG
AGTCAGAcaaagaggaagaatctgagaaagaagatgaagaagaagaagaa
aaggaggaggaagaagaagaaccAACCAGTCGTTTCGGACGTCGCAACAA
ATAcgaagatgaagatgatgatCCATGGGCGAACACACCTAAAACAgaag
agaagaaagaagaacCAGCCGAAGAGTCTGAAGAAGAATCCGAAGAAGAA
GAGTCTGAAGAAGAAGATAGCGATTTCGACATCTAAACCATCTTGATATG
ATGGGAGTTGGACTAGAACTGAAGGATTTTTCCAACCAATGTTGGCTCTT
GTTGGACAGTTGAATAAAAATGTAAGTGATAATGGATGGTGCTCATGTTG
GAAAGATTTTACAAACTAAATATGATATTGAGTATCTGAACCTTTACTGG
ATAAtttacagaaatttttttttggtactttttcaaaattggatgttttc
tttattttttggatgcattttttacattttattttttctaggtTACTAAA
AATCCATTAAGTCGTCCTGCTATAATCTGTCATTTTAACTATGACATTAC
CTTATTTGCTGATATCTCATACAAAGGAATCTCCATTTAAATAGTGATTG
AAACACGATTTGTgattgtttttgtttaaaacaagtcTAATCCCCCTTCT
CAAGAGCTTTCTCAATCCTCTTTTACAGTTTGTTCAAAACGTTTGTATCA
TATTTCTCACATAATTTGAATAGCAATATTTTTGTAAGCACATAAACATC
ACTGAA Coding sequence (CDS) from alignment at sc0000255:128169..129974 >TCONS_00016986 ID=TCONS_00016986|Name=TCONS_00016986|organism=Clytia hemisphaerica|type=CDS|length=1122bp|location=Sequence derived from alignment at sc0000255:128169..129974 (Clytia hemisphaerica)
aTGAGTGATGAAAAGTTGgtcaatttgaagaaaaaacttcATAATATCAC
CGAATTAATTGATAATGCTGACCAGAGGAAACTTGATGCAAAACATAGCA
TCGTTGAAGCTTTAGCTCGGTTAGAGAAATCAGAAGGTGAATTGGCCAGT
GCGGAGCGGAGAATTCAACTCTTGCAAAAAGAGCTTGAAGATGCCACAGA
ACGTTGCTCGACTGCTGAGACTAAGCTAAAGCAAGCAGAAGAAACCACAG
AAGGTTTTGAACAGAAAAGAAACGAGCTTGAGGAGGTGGAAAGTGCACAA
GATGAACGCGTTAACACTCTTGAAGAAGATACCAAAGAAGCTAAACGAAC
ATTGGAAACTAACGAAACCAAATTCATCGAAGCTCAACGTAAGGTAGTTG
TCGTCAATCGTGATACTGAAAAAGTCAAAGATAAAGCAGACACTTTAGAA
AAACGTGTAGCGTTATTGGAAGAAACGATCGAGAACGCTGGTAAAAGTTT
GAACGAATTAGAAGAACGGGAAGGAGAATCTTCAGAACGCGAAGAATTGA
ACGAAGAAAAACGTCGTTTCTTGGAGGGTCAATTCAAAGAAGCAGAAGTT
CGTGCAGAAGCTGCTGAACGTAGTTGCGGTGTAATGGAACGCAACATTCT
GGAAACCACCAACGAAATCAACACCTGGAAAGAGAAACGTGAAAAGATCG
AACAAGAAATGTTGGACATGGACGCCGTCGCTGATGAAGATGAATACGCA
AATCTTGGTGATGACGATGGCTCACTGAAATCCAACGAACCCGTTGATCT
CATGTCCAAATTCGGTGGTGCTGGTAAAATCGAAATCCCCAAAGTAACTG
AAGCACCACCCAAGCCAGCGGAAGAAACGAAATCTGAGTCAGAcaaagag
gaagaatctgagaaagaagatgaagaagaagaagaaaaggaggaggaaga
agaagaaccAACCAGTCGTTTCGGACGTCGCAACAAATAcgaagatgaag
atgatgatCCATGGGCGAACACACCTAAAACAgaagagaagaaagaagaa
cCAGCCGAAGAGTCTGAAGAAGAATCCGAAGAAGAAGAGTCTGAAGAAGA
AGATAGCGATTTCGACATCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016986-exon-sc0000255-1491911889:128169..129974 | TCONS_00016986-exon-sc0000255-1491911889:128169..129974 | Clytia hemisphaerica | exon |
| TCONS_00016986-exon-sc0000255-1510915933:128169..129974 | TCONS_00016986-exon-sc0000255-1510915933:128169..129974 | Clytia hemisphaerica | exon |
| TCONS_00016986-exon-sc0000255-1575043694:128169..129974 | TCONS_00016986-exon-sc0000255-1575043694:128169..129974 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000255 | supercontig | sc0000255:128169..129974 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000533 | Tropomyosin |
Blast
The following BLAST results are available for this feature:
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