TCONS_00016986-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00016986-protein
Unique NameTCONS_00016986-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length373

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00016986-protein ID=TCONS_00016986-protein|Name=TCONS_00016986-protein|organism=Clytia hemisphaerica|type=polypeptide|length=373bp
MSDEKLVNLKKKLHNITELIDNADQRKLDAKHSIVEALARLEKSEGELAS
AERRIQLLQKELEDATERCSTAETKLKQAEETTEGFEQKRNELEEVESAQ
DERVNTLEEDTKEAKRTLETNETKFIEAQRKVVVVNRDTEKVKDKADTLE
KRVALLEETIENAGKSLNELEEREGESSEREELNEEKRRFLEGQFKEAEV
RAEAAERSCGVMERNILETTNEINTWKEKREKIEQEMLDMDAVADEDEYA
NLGDDDGSLKSNEPVDLMSKFGGAGKIEIPKVTEAPPKPAEETKSESDKE
EESEKEDEEEEEKEEEEEEPTSRFGRRNKYEDEDDDPWANTPKTEEKKEE
PAEESEEESEEEESEEEDSDFDI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009508XLOC_009508Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00016986TCONS_00016986Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000533Tropomyosin
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 6..26
NoneNo IPR availableCOILSCoilCoilcoord: 216..236
NoneNo IPR availableCOILSCoilCoilcoord: 188..208
NoneNo IPR availableCOILSCoilCoilcoord: 139..173
NoneNo IPR availableCOILSCoilCoilcoord: 290..319
NoneNo IPR availableCOILSCoilCoilcoord: 34..124
NoneNo IPR availableGENE3D1.20.5.340coord: 3..71
e-value: 8.0E-8
score: 31.8
coord: 127..194
e-value: 1.9E-5
score: 24.2
coord: 195..248
e-value: 0.038
score: 13.6
coord: 72..126
e-value: 4.1E-4
score: 19.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 237..373
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 72..115
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 166..187
NoneNo IPR availableSUPERFAMILY57997Tropomyosincoord: 3..237
IPR000533TropomyosinPRINTSPR00194TROPOMYOSINcoord: 108..136
score: 37.03
coord: 47..64
score: 49.95
coord: 194..219
score: 45.07
coord: 138..161
score: 29.45
IPR000533TropomyosinPFAMPF00261Tropomyosincoord: 11..237
e-value: 7.3E-39
score: 133.4

Blast
[Close]
BLAST of TCONS_00016986-protein vs. Swiss-Prot (Human)
Match: TPM1 (Tropomyosin alpha-1 chain OS=Homo sapiens GN=TPM1 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.949e-20
Identity = 77/232 (33.19%), Postives = 133/232 (57.33%), Query Frame = 0 
Query:    6 LVNLKKKLHNITELIDNADQRKLDAKHSIVEALARLEKSEGELASAERRIQLLQKELEDATERCSTAETKLKQAEETTEGFEQKRNELEEVESAQDERVNTLEEDTKEAKRTLETNETKFIEAQRKVVVVNRDTEKVKDKADTLEKRVALLEETIENAGKSLNELEEREGESSEREELNEEKRRFLEGQFKEAEVRAEAAERSCGVMERNILETTNEINTWKEKREKIEQEM 237
            LV+L+KKL    + +D   +   DA+  +  A  +   +E ++AS  RRIQL+++EL+ A ER +TA  KL++AE+  +  E+    +E      +E++   E   KEAK   E  + K+ E  RK+V++  D E+ +++A+  E + A LEE ++    +L  LE +  + S++E+  EE+ + L  + KEAE RAE AERS   +E++I +  +E+   K K + I +E+
Sbjct:   43 LVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEL 274
The following BLAST results are available for this feature:
BLAST of TCONS_00016986-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TPM13.949e-2033.19Tropomyosin alpha-1 chain OS=Homo sapiens GN=TPM1 ... [more]
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