|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016973 ID=TCONS_00016973|Name=TCONS_00016973|organism=Clytia hemisphaerica|type=transcript|length=1315bp
CAACCATTAGTTCAAGAGGGCAATGAAATATCCTCAAATGTCACTTCTAA
TGTCTCCTCAGCCATTGGTTACGTTCATTGACTTCAAAGATAAATTATTG
TTTTGactaaaagaagaaaagCATTATCTACAGATTTCGATGGAATACTT
GAAGTATGCAGAAAGTGGAACCTCCATAAACTAAGAGCATATTTAGAGGA
TTATCTTTGCACTAAACACCCAAACCGTCcttcaaattcaaattatatTT
GGACTTTAAACAAAGATCAGTTGAAGCTTATCAAGTTGGCAAccaaattt
gatataaagactTTATATCATGAAACGATGTCCCCGACTCCACGCATCGA
TTTGGGATCAATGAAAGACAATCAAGCATTCCAAGATCTTCCAATGTTAA
CGAGATACGAGTTGTTAAGGAATTCAGTTATTCatctttttcaaagaaaa
ggCCAGTCAATCATTTCTGAAGTAGATGACATTTTCAATTTCTACGATGT
CCTTCTTTACGAGAAAAGAACACCCGACATTTCAGCAAAGAAATCATTTC
AGGAGGAACCTTGCTTTGAATACGATCCAAAAGAGAAAGATTGTTTTCTA
GCAGAACCGGCAGACAAGAGATTTGTAGTTTTGATCATCGAAGGAATAAA
ACTCTATGTCGATTCGTACATTTTAGTTGATAATTCTCCGGTGTTTGAAG
AAATGCTCGAAACAGCTTTCCGAGATGAAAGTGGAAAGAAAGTGTTGGCA
ATGCCTGGCAAAGATGTCAACCAAATTGCTCATCTACTAACATTCTTGTC
TGAACCAAGAGAAATTGAAGTGAACAATACCGATTTGCTGGCACTGGCAA
GCCTTATTGATGAATTTGAAATGACCCTGTTAAAAGACAAAATTCGACTG
TTTTTGGAGAATGTCCATGAAGATAAACCTAAAGTTCAGTTGAAGTATCT
CAAATTGGTGTGTATGTTGAGACTCTCTAGTGTTTCAAAGTTCAACATTC
TCAATCAAATTGGCCGAGGATTGACAAGGTTCTCCAAACTTCGATTGATC
AAAGAATTATACCGTTTGAATTTGGAAACAATAAAACTAGTTGCACAAAA
TCGTTTGTGGTACcttttgcaaaaagattttgataatttattGGACAAAA
TACAAGACGAGATGAATGTCATTTTAGACATATATATGTCAAGAGCGAGC
AGAAGATAATCGCGCTACAAAATTACAACACCAAGATATTCATCACCTGA
TATTTATTACATGTAAAATAATACGAAGTAAAACGTTCGTAAGCAGTAGC
GTCGTGGCAGGGGGN Run BLAST on NCBI transcript from alignment at sc0000255:121369..125169- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016973 ID=TCONS_00016973|Name=TCONS_00016973|organism=Clytia hemisphaerica|type=transcript|length=3801bp|location=Sequence derived from alignment at sc0000255:121369..125169- (Clytia hemisphaerica)
CAACCATTAGTTCAAGAGGGCAATGAAATATCCTCAAATGTCACTTCTAA
TGTCTCCTCAGCCATTGGTTACGTTCATTGACTTCAAAGATAAATTATTG
TTTTGACTAAAAGAAGAAAAGGTATTGTTATATTATTGTGTTTGTTTTAC
TTTAATACAACCCCCTTGGTGCTTCTTTGATTTAAATAAAAACATAGATT
ATAATTCCATCATAGTGATTTTTTTTTCAAATTAGTTCTTATAAAAGACC
TGCAAAATGAATAGAATTCTGAGAAATGACGAAATACACAAATAATGTAT
ATGACTTTCGTTTTAGTGTTTTTGTGTGTGTTATTTTCTGTTTGTATAGC
ATTTGTATGTTTACAGCGTACAGTACTTCGAATATTACTTTTTGTTGTAG
AAAAGGCAAGGAGAGAAAATATCACGGTTAACTTTTTTACAGTCGAGAAT
TAAAAACTTTATTATAAAAATGTCGGTGTCTAATGTCAACGAAGAGAAGG
AAATTATTAATGTGGAGGAAACCGAGACCAAGGATTCTGAGAATGAAGAT
GAAAATGAAATTGCAGATGTTAAGAAGCAGCTTGTTCTGTTTGATTTGGA
AGAAGAAAATTGTGATGTGGCGATATCAACCAAGGATAAAGTCATTTTTG
TTAAATCAACCTTTTTGCAGTATGTTTTTGGTGTCCGTTTCAATGAAATT
TTAGCATCAGCAACTAATAATCACAATGAGAATCGTGATGGAAATGTGGA
TGGTATCTTGGAAGAAGTCAAACCTGTAAAGTACAAGATAGACTTGGAGG
CGGAAAACATTGAAAGCAAAAACATCGAATTTGCACTATCATTTTATCAA
CCACTTCAATTCAGTGTCGACGTTGATGGTGAGTAATTAAAAAAAACTTC
TAAATTGACTTTTGACAAAACGTTATTTTGCCTTTTCATTATCATTCGAG
TACAAATATGTCAATTTAGTGGTGTAGAAATGGGTCAAAACCAGTTCGAA
TACAAAAAAGAATACAAGTATTATCGTATATTATCTAATTTTTATTGGAC
CTACTTGGAGGTCCTATAAATTAACCTGTGTTCGTCCGTCCGTCCGTCCG
TCCGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNCTGGCCAAATTCGATATTTTTTATAAGCACATTAT
CAATTATTTAGGTATTAGCTTTTCTCGAGATTGGCTCTTTCATTCTTTAT
GATTTATTGCACAAACATGCATAACTATAAACCCTCGAATGTAACGGANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNAGATTTTTGTAAAAGAAGAATTTTTCAGCT
CAAAAAACGCATCTTTATCTATAAGAATCACTATTAATAAGCATACATCA
ATGTTCTTATCCAAATTACCCAATTTTTTGATGAGATAGATGTTTGTTTT
TGCTCACAAAGTCTTGAATATTAAAGAATATTTCAAGAGCATGAAATTTT
GGTTTCCAAACGTTTTTTTATAAGAAACAAACGACTAATTTTAATAGATC
GTCACTATTTGTGTTCTGAATGATTGTTAAATGGTCACGTCACGTAGATA
TCAATTATAAATGTGTTAAATGCATAACCAGGTAGGTCCATAAAAGTATC
ACTTGTTTCATATATACTTCCTTACAGCTACTTGTTTCAAATAAACGCCC
CTCCTAGAGAGAAAGCGTTTATTCAAAGGGGGCGTTTATCCCCCCTGAGT
TCTTTAGAAAGTTCCCTTAAAGGAGCGGCGTTTAAAAGAAGGGAGCGTTT
ATTCGAAGTAATACGGTACCTCGAAATGCTTTCAAGATTATTTTTTTTTT
AATTATGATTTCTACCATAGCATTATCTACAGATTTCGATGGAATACTTG
AAGTATGCAGAAAGTGGAACCTCCATAAACTAAGAGCATATTTAGAGGAT
TATCTTTGCACTAAACACCCAAACCGTCCTTCAAATTCAAATTATATTTG
GACTTTAAACAAAGATCAGTTGAAGCTTATCAAGTTGGCAACCAAATTTG
ATATAAAGACTTTATATCATGAAACGATGTCCCCGACTCCACGCATCGAT
TTGGGATCAATGAAAGACAATCAAGCATTCCAAGATCTTCCAATGTTAAC
GAGATACGAGTTGTTAAGGAATTCAGTTATTCATCTTTTTCAAAGAAAAG
GCCAGTCAATCATTTCTGAAGTAGATGACATTTTCAATTTCTACGATGTC
CTTCTTTACGAGAAAAGAACACCCGACATTTCAGCAAAGAAATCATTTCA
GGAGGAACCTTGCTTTGAATACGATCCAAAAGAGAAAGATTGTTTTCTAG
CAGAACCGGCAGACAAGAGATTTGTAGTTTTGATCATCGAAGGAATAAAA
CTCTATGTCGATTCGTACATTTTAGTTGATAATTCTCCGGTGTTTGAAGA
AATGCTCGAAACAGCTTTCCGAGATGAAAGTGGAAAGAAAGTGTTGGCAA
TGCCTGGCAAAGATGTCAACCAAATTGCTCATCTACTAACATTCTTGTCT
GAACCAAGAGAAATTGAAGGTACTATCCGTTTTATGTGCTCTCCTTTTAT
TAAGTCTTTTACACATTTTTTTATAAGCAACTCAAATTTTTGGGTCAGGG
GTCAGGGCTAGGGTTACTTTTGAGAAATTTGATCTGACCACCCCTGATTA
TACCATATATTTGCTTATTGGGTCAAGGGCTATGGTTTGTCATGGTTGGA
CTATCTTAAAAACATTTTACTTTAGGAGATAATAAAAAAGAATTGGTTAA
TTGCTGAAAGTAATACCTCGTTTGAAAGATGATTGGTATAAAGCCTCGAA
TGATTTTCTAAAATGTTAAAAATAGAGATGGAAGAAAAGAAGAAAAATGA
AGACACTTGATTTTACACTTTTCTCTAACTTTGAACCACGTTGATTTTAA
ATATTTATTCAGATTTTTCCATTTCTGTCTTTCAGATCAAAAGTCTATTA
AGTTTATCGTCCAATTTGGCATACTTTCGAAGACCTATTTTCTTTTGTTC
TTATAGTGAACAATACCGATTTGCTGGCACTGGCAAGCCTTATTGATGAA
TTTGAAATGACCCTGTTAAAAGACAAAATTCGACTGTTTTTGGAGAATGT
CCATGAAGATAAACCTAAAGTTCAGTTGAAGTATCTCAAATTGGTGTGTA
TGTTGAGACTCTCTAGTGTTTCAAAGTTCAACATTCTCAATCAAATTGGC
CGAGGATTGACAAGGTTCTCCAAACTTCGATTGATCAAAGAATTATACCG
TTTGAATTTGGAAACAATAAAACTAGTTGCACAAAATCGTTTGTGGTACC
TTTTGCAAAAAGATTTTGATAATTTATTGGACAAAATACAAGACGAGATG
AATGTCATTTTAGACATATATATGTCAAGAGCGAGCAGAAGATAATCGCG
CTACAAAATTACAACACCAAGATATTCATCACCTGATATTTATTACATGT
AAAATAATACGAAGTAAAACGTTCGTAAGCAGTAGCGTCGTGGCAGGGGG
N
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016973-exon-sc0000255-1575043694:125049..125169 | TCONS_00016973-exon-sc0000255-1575043694:125049..125169 | Clytia hemisphaerica | exon |
| TCONS_00016973-exon-sc0000255-1575043694:122351..123049 | TCONS_00016973-exon-sc0000255-1575043694:122351..123049 | Clytia hemisphaerica | exon |
| TCONS_00016973-exon-sc0000255-1575043694:121369..121863 | TCONS_00016973-exon-sc0000255-1575043694:121369..121863 | Clytia hemisphaerica | exon |
| TCONS_00016973-exon-sc0000255-1510915933:125049..125169 | TCONS_00016973-exon-sc0000255-1510915933:125049..125169 | Clytia hemisphaerica | exon |
| TCONS_00016973-exon-sc0000255-1510915933:122351..123049 | TCONS_00016973-exon-sc0000255-1510915933:122351..123049 | Clytia hemisphaerica | exon |
| TCONS_00016973-exon-sc0000255-1510915933:121369..121863 | TCONS_00016973-exon-sc0000255-1510915933:121369..121863 | Clytia hemisphaerica | exon |
| TCONS_00016973-exon-sc0000255-1491911889:125049..125169 | TCONS_00016973-exon-sc0000255-1491911889:125049..125169 | Clytia hemisphaerica | exon |
| TCONS_00016973-exon-sc0000255-1491911889:122351..123049 | TCONS_00016973-exon-sc0000255-1491911889:122351..123049 | Clytia hemisphaerica | exon |
| TCONS_00016973-exon-sc0000255-1491911889:121369..121863 | TCONS_00016973-exon-sc0000255-1491911889:121369..121863 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000255 | supercontig | sc0000255:121369..125169 - |
Blast
The following BLAST results are available for this feature:
|
