TCONS_00016971 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016971
Unique NameTCONS_00016971
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length424

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016971 ID=TCONS_00016971|Name=TCONS_00016971|organism=Clytia hemisphaerica|type=transcript|length=424bp
GGAATATAACTGTTGTCTTTCTCTGATGAAGGATATATTTAACTCTACAA
TGCCGTGCTTGGTCTATGTAGTGCCGTCCTGCAATGAGCGTTGCTGCCTA
TTTAAGTAAACAAGGCAATATCCGTCCATTATTTGTTTCATTTACAGTAG
ATGATGATTTTTACAACCAAGCAATGGTTTCATTTGAGTTTCGTTAACGA
GCCATTTATCCATCAGATAGTATTAGTCGAACGTTAATTCTATTAATACC
AGTAGTAAAAACGTCAATCTTTAACAAATTCAAATGTTCTTCTTTCAGGT
AAAACCATTCAATGGCTGTGGacgtagactggagtcgtttataatgcgtg
taatactaataataccaatactaataataataataataataataataata
cgggatttagtttgtataaacgac
Run BLAST on NCBI

transcript from alignment at sc0000255:108612..109035-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016971 ID=TCONS_00016971|Name=TCONS_00016971|organism=Clytia hemisphaerica|type=transcript|length=424bp|location=Sequence derived from alignment at sc0000255:108612..109035- (Clytia hemisphaerica)
GGAATATAACTGTTGTCTTTCTCTGATGAAGGATATATTTAACTCTACAA
TGCCGTGCTTGGTCTATGTAGTGCCGTCCTGCAATGAGCGTTGCTGCCTA
TTTAAGTAAACAAGGCAATATCCGTCCATTATTTGTTTCATTTACAGTAG
ATGATGATTTTTACAACCAAGCAATGGTTTCATTTGAGTTTCGTTAACGA
GCCATTTATCCATCAGATAGTATTAGTCGAACGTTAATTCTATTAATACC
AGTAGTAAAAACGTCAATCTTTAACAAATTCAAATGTTCTTCTTTCAGGT
AAAACCATTCAATGGCTGTGGACGTAGACTGGAGTCGTTTATAATGCGTG
TAATACTAATAATACCAATACTAATAATAATAATAATAATAATAATAATA
CGGGATTTAGTTTGTATAAACGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009499XLOC_009499Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016971-exon-sc0000255-1575043694:108612..109035TCONS_00016971-exon-sc0000255-1575043694:108612..109035Clytia hemisphaericaexon
TCONS_00016971-exon-sc0000255-1510915933:108612..109035TCONS_00016971-exon-sc0000255-1510915933:108612..109035Clytia hemisphaericaexon
TCONS_00016971-exon-sc0000255-1491911889:108612..109035TCONS_00016971-exon-sc0000255-1491911889:108612..109035Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000255supercontigsc0000255:108612..109035 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.220124	0.223994	0.235142	0.176602	0.458432	0.797716	0.449265	0.805301	1.21201	0.115733	0.685034	1.58929	0.339264	0.617525	0	0	0	0	0.22762	0	0	0	0	0.158225	0	0	0	0.186827
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016971 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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