TCONS_00016963 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00016963
Unique Name	TCONS_00016963
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2610

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000255:48269..50878-

transcript sequence

>TCONS_00016963 ID=TCONS_00016963|Name=TCONS_00016963|organism=Clytia hemisphaerica|type=transcript|length=2610bp
tgggaatttaaattggtttaaatgtataatttcatagcaatgaaatctgt
ttgaaaacgaggacaacaataaatttatgcatctcaaGAAGAGTGTATTG
GCCTATTAAATAGTTAGAAGAATTTAACTATCTCAATTAGTTAATTATAA
TTAAATACAATTCAAACATAATAATAAATAactaaaaataaattagaaac
AAGGCTTTTATAAAAAGTCTGAATAAAGGTTTTATGACaagtttgtcatt
ttttataatGTTTTCTTGTCGTacctcaaattttaagttaggctaTCAAC
TTTTTAGTATTTTGAGCTCAACGTTAATTTAGTTTGATCTTAGTAACCTG
ATAACatctgttcataattttcttacgcgcacggtaaacctctgaagacg
cttgaaaattatacaccTGAGAAAAATAGTCCTctcgcggaaaattctac
agcaagaatcttgttgtgcgccagaaagtcaaaaactgatacgtcGTCCT
ATTCATAAATATAATCATggaactttgttgtcattcctagtccttttaaa
ggaacgcggtccttacgattttgagattgCATATTGGTGAGATTGTTATG
TGAtaacaatctgatctcaggttagatCTCAGGAGCTCGTCAAACGTATC
cagagttgttttttttttaatgaaggTCACCTGGTATGAAAGTTCTTGGA
TGGCTAGCACTGTTATGTAGTAATCAAAAGTAAAAGCTAAAGCCAAAAAA
CCTACGGACTAAAAAAATCTACGGActaaaatcttaattttgaAACCATT
CTTTTCGTCAGAGATTAATGAGGATTCTACTGTATCTACACTATATTTGT
AGTATTGCCATAACTAACGGTATAGtccaattttcattttgtattaCTTT
TAGAATTACCGTACATATCCTGGGGATGCACTGTAATCTCAATGGTGTTG
TCAAACGTTGACGGCTGAAGAGTTTCTCCTCGACATTGTTTGCCAAAGTA
GTGGAATCTCTTCTGAAACACGGAAAGTCCGAACATTACTTTCCGATTTA
CAATACGGACAACTTGCATTCTGTCGAAGTGCTTTATTCAGACAGTCTTT
ATGATATCCGTGATGGCAAGCCAGTAATGCAATTTCTTCATCCAGTTCAA
AATCATCAAGACAAATAGGACAACTGGAATTGAAAGGCTCATTAAATACA
ACCAATGTTTGTAATGGTTTAGCTTCTGGGATAATAAAATACTCAGATTC
GCATAGATTGTCAATACTCATTATAGAGATATTTGGATCATTTATCGAGT
TGGGTTCTTCTGGATCGATACTGATGATTGTTGATTTTGGTCTGCTTTCA
CTGATGTTACTCCTTAAATGATTTTTACGAAAACTTTGTATGATTTTACC
GGGCAAGCTCGTTTTTTTACGTTCAGGTTCTTCCGTTAACTGCTTAACTC
CGGACTCTGCATTGCTTGATTTTAAAGGTTCactttctttgatgttttta
tcATCATAACTGACATCATTTTCAAGTTCGTCTTTACAATCATCTGTTTG
CTCATCGTTAATCTCCTCATTTTTACAGCAAGTTTTGACTGTAATTATAG
GAGGTTGATTGGGTTCTAACAGTTGATTCTTCTTACAAACACTATCATGC
TCATCTTCAATGGTGggtagaaatttcttttttaaagctgGAGTGATCAT
ACCTTTCGTTTCATCGCAGCATGTTTTTGGTAAAACAGTCTTAAACTTTA
TGACTTTGCATTGGCAGACAAGAATGGTTGAAGCTTGTTGGAAAGTGGCT
GGTAAACAAACAATAGCATATCCGAAAACTTTCCAAATACGACTCGAAGT
GAAGGGATATAAATCAAAGGTCCAATTGTTGAGATTATTTTCTTCTGGCT
CCAGTTTGATAAATACAATCCTTGATTTTACGAATTTATAGAAATGCATA
GAGTAGATGGTGAATATGATAGATAGTATGAGTACGATAAGGCTGGCTAG
AACGTACACTGGATAAACGTAATAAgccatattttatttttgagcttCTT
TGAATAGAGTTTTCAAtttgcctgaaaatgaaaaaaaaagataattaatc
agattagaaaaaatttctcaatatCGGTATATGTACCAGAATACCGGAAA
TTCTGCCTTTAACTACCGGAATACTaagctgcacgcatcccctctgatat
ttcttgatacatcaaaatcaattctggGCATGCGCGCAGCCTAACGCAAT
ACTGGTCATTTTCCGACAAATTTCTCGGTGGCCCCCTTTAGATAATGCAT
AAactttatttcttaaaataaagtTACAGTTCAtgccattttactttttt
tttgataacgctaaaaaatcaaaaaagtggtAAATATGGCTCTGGGTACA
GGATTGAAAGTCTTTCCATGTAGCGGTCTTCTCATCGAAGACAGGACATC
TCAAAAGAAATAGCACCAATATCTCATTTCTTCTCAACCTTTACCTTCTT
ACTGTAATCGCGAACAGAAAATCCGAAAATTCACAAATAATCTTCAAATT
ATTATCTTCAAAAATCTTATGTGACaaatcaagtttaaaaaaaaaggaag
gaataaagat

Run BLAST on NCBI

transcript from alignment at sc0000255:48269..50878-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00016963 ID=TCONS_00016963|Name=TCONS_00016963|organism=Clytia hemisphaerica|type=transcript|length=2610bp|location=Sequence derived from alignment at sc0000255:48269..50878- (Clytia hemisphaerica)
TGGGAATTTAAATTGGTTTAAATGTATAATTTCATAGCAATGAAATCTGT
TTGAAAACGAGGACAACAATAAATTTATGCATCTCAAGAAGAGTGTATTG
GCCTATTAAATAGTTAGAAGAATTTAACTATCTCAATTAGTTAATTATAA
TTAAATACAATTCAAACATAATAATAAATAACTAAAAATAAATTAGAAAC
AAGGCTTTTATAAAAAGTCTGAATAAAGGTTTTATGACAAGTTTGTCATT
TTTTATAATGTTTTCTTGTCGTACCTCAAATTTTAAGTTAGGCTATCAAC
TTTTTAGTATTTTGAGCTCAACGTTAATTTAGTTTGATCTTAGTAACCTG
ATAACATCTGTTCATAATTTTCTTACGCGCACGGTAAACCTCTGAAGACG
CTTGAAAATTATACACCTGAGAAAAATAGTCCTCTCGCGGAAAATTCTAC
AGCAAGAATCTTGTTGTGCGCCAGAAAGTCAAAAACTGATACGTCGTCCT
ATTCATAAATATAATCATGGAACTTTGTTGTCATTCCTAGTCCTTTTAAA
GGAACGCGGTCCTTACGATTTTGAGATTGCATATTGGTGAGATTGTTATG
TGATAACAATCTGATCTCAGGTTAGATCTCAGGAGCTCGTCAAACGTATC
CAGAGTTGTTTTTTTTTTAATGAAGGTCACCTGGTATGAAAGTTCTTGGA
TGGCTAGCACTGTTATGTAGTAATCAAAAGTAAAAGCTAAAGCCAAAAAA
CCTACGGACTAAAAAAATCTACGGACTAAAATCTTAATTTTGAAACCATT
CTTTTCGTCAGAGATTAATGAGGATTCTACTGTATCTACACTATATTTGT
AGTATTGCCATAACTAACGGTATAGTCCAATTTTCATTTTGTATTACTTT
TAGAATTACCGTACATATCCTGGGGATGCACTGTAATCTCAATGGTGTTG
TCAAACGTTGACGGCTGAAGAGTTTCTCCTCGACATTGTTTGCCAAAGTA
GTGGAATCTCTTCTGAAACACGGAAAGTCCGAACATTACTTTCCGATTTA
CAATACGGACAACTTGCATTCTGTCGAAGTGCTTTATTCAGACAGTCTTT
ATGATATCCGTGATGGCAAGCCAGTAATGCAATTTCTTCATCCAGTTCAA
AATCATCAAGACAAATAGGACAACTGGAATTGAAAGGCTCATTAAATACA
ACCAATGTTTGTAATGGTTTAGCTTCTGGGATAATAAAATACTCAGATTC
GCATAGATTGTCAATACTCATTATAGAGATATTTGGATCATTTATCGAGT
TGGGTTCTTCTGGATCGATACTGATGATTGTTGATTTTGGTCTGCTTTCA
CTGATGTTACTCCTTAAATGATTTTTACGAAAACTTTGTATGATTTTACC
GGGCAAGCTCGTTTTTTTACGTTCAGGTTCTTCCGTTAACTGCTTAACTC
CGGACTCTGCATTGCTTGATTTTAAAGGTTCACTTTCTTTGATGTTTTTA
TCATCATAACTGACATCATTTTCAAGTTCGTCTTTACAATCATCTGTTTG
CTCATCGTTAATCTCCTCATTTTTACAGCAAGTTTTGACTGTAATTATAG
GAGGTTGATTGGGTTCTAACAGTTGATTCTTCTTACAAACACTATCATGC
TCATCTTCAATGGTGGGTAGAAATTTCTTTTTTAAAGCTGGAGTGATCAT
ACCTTTCGTTTCATCGCAGCATGTTTTTGGTAAAACAGTCTTAAACTTTA
TGACTTTGCATTGGCAGACAAGAATGGTTGAAGCTTGTTGGAAAGTGGCT
GGTAAACAAACAATAGCATATCCGAAAACTTTCCAAATACGACTCGAAGT
GAAGGGATATAAATCAAAGGTCCAATTGTTGAGATTATTTTCTTCTGGCT
CCAGTTTGATAAATACAATCCTTGATTTTACGAATTTATAGAAATGCATA
GAGTAGATGGTGAATATGATAGATAGTATGAGTACGATAAGGCTGGCTAG
AACGTACACTGGATAAACGTAATAAGCCATATTTTATTTTTGAGCTTCTT
TGAATAGAGTTTTCAATTTGCCTGAAAATGAAAAAAAAAGATAATTAATC
AGATTAGAAAAAATTTCTCAATATCGGTATATGTACCAGAATACCGGAAA
TTCTGCCTTTAACTACCGGAATACTAAGCTGCACGCATCCCCTCTGATAT
TTCTTGATACATCAAAATCAATTCTGGGCATGCGCGCAGCCTAACGCAAT
ACTGGTCATTTTCCGACAAATTTCTCGGTGGCCCCCTTTAGATAATGCAT
AAACTTTATTTCTTAAAATAAAGTTACAGTTCATGCCATTTTACTTTTTT
TTTGATAACGCTAAAAAATCAAAAAAGTGGTAAATATGGCTCTGGGTACA
GGATTGAAAGTCTTTCCATGTAGCGGTCTTCTCATCGAAGACAGGACATC
TCAAAAGAAATAGCACCAATATCTCATTTCTTCTCAACCTTTACCTTCTT
ACTGTAATCGCGAACAGAAAATCCGAAAATTCACAAATAATCTTCAAATT
ATTATCTTCAAAAATCTTATGTGACAAATCAAGTTTAAAAAAAAAGGAAG
GAATAAAGAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_009499	XLOC_009499	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00016963-exon-sc0000255-1575043694:48269..50878	TCONS_00016963-exon-sc0000255-1575043694:48269..50878	Clytia hemisphaerica	exon
TCONS_00016963-exon-sc0000255-1510915933:48269..50878	TCONS_00016963-exon-sc0000255-1510915933:48269..50878	Clytia hemisphaerica	exon
TCONS_00016963-exon-sc0000255-1491911889:48269..50878	TCONS_00016963-exon-sc0000255-1491911889:48269..50878	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000255	supercontig	sc0000255:48269..50878 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0524178	0.0649926	0.0260092	0.0660952	0.0762967	0.0598173	0.699845	0.705192	0.270522	0.223124	0.619588	0.441945	1.70478	0.818934	0.0265293	0.0725258	0.197848	0.164772	2.99195	4.31357	1.05541	1.18057	0.231044	0.248889	0.292015	0.343634	0.317571	0.0580027	0.0293005	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00016963 vs. Swiss-Prot (Human)

BLAST of TCONS_00016963 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00016963 (transcript) - C. hemisphaerica