TCONS_00016925 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016925
Unique NameTCONS_00016925
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2394

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016925 ID=TCONS_00016925|Name=TCONS_00016925|organism=Clytia hemisphaerica|type=transcript|length=2394bp
ATAAGCAACacattttcaaagacattaagAAAATTTGACTCATAAAATAA
TATTGATTTAATAGAAAGCACTGTGATCTCAActttaagaagatttttta
agtgtcaaattttaaaagaatgttttcatAAATTTATCAGCACTGTGTTA
GCATCTATACCAGTTGCCGCATAAACTGACAAAGTGGCATGGACCCGAAT
CAACTCCCTCATTTCGAACTTGGTATTTCGGTATAGGAGGTGGCTAAACA
ATTTGTGTCATAGAGTTTGTTTGTAACGTTTCACGTTGACTTGTCAACTG
GATATTGCAATTTATCTTGGAGATATCAATTTGTAAAGATGAATCCTCCT
TGTGCACGTTGCAATAAGACTGTATATCCTACAGAGAAATTAAATTGTCT
GGATAAAATATGGCACAAGGGTTGTTTCAAATGCGAATCTTGTGGTATGA
CCTTGAACATGAAAAACTACAAGGGATACAAGAAGCTTCCATACTGTAGT
GCTCACTATCCCACTACCAAGTTTACAGCTGTTGCTGATACTCCAGAAAA
TTTGCGTTTGAAGAAAAATACAACAAATCAGAGTGGGGCTGTTTACCAGA
AAGAATTTATTAAGGAAAAGGGAAAGTTTACGGCTGTTACTGATGACCCT
GAAACCATGAGAACAAGAAAGACACAGCAACAAGCCAGCGGCGTTGTATA
TCAAAAAGATTTCATTAAGGAAAAGGGAAAAGTTACATCTGTTACTGATG
ACCCTGAAACAATGAGAACGAAGAAAACACAACAACAAGCTAGCGATCTT
TCATACAGGGGTACTGCACCACCAGGATCTCGAGAAGCTGATGGTTCATC
TTCTTCACTTGAAGATACCAGATATACACCACGTTCAGAGCCAGTACATC
AAGCACCAGCACCCACATATGATCCAGAACCAGAGTACGAGCCTGAGCCA
GAACCCGAACCTGAACCCGAGCCAGCGTTACCTGAACCAGCAGCGGGAGG
GAGTGGTGGAAGATATGTTGCAATTTATGATTATGCTGCAGCTGATGAGG
ACGAGGTGTCTTTCCAAGAAGGAGACATTATCATTAACGGCGAATCGATC
GACGCCGGATGGATGACGGGAACTGTCGAACGCACTGGCGAAAGCGGTAT
GTTGCCCTCCAATTACGTCGAAGAAGCTTAAAAATTTTGCATCAAAATCA
AGTATACGTTCACACATGAAAAagcaaagttaaaaaatattttttatgtt
aataattttttttgtttcatttttttttttttcttcataacaCGTTTTAG
AGAAAACTCTTTTTCATATATATCTCTTACTTTTTGGCTGTTTCTAAACA
GTTTTAAATAACCATATTAAAGTTGAAAGTTCTTTATTGAGAGAAAAATT
TTGTTGTGTAAATTCGTAATTAAACCCAATTGACTTTCATTGAGTCACGT
AAACATTTTTCCCCGTTTATTTTTTGTGCTTTTTTTTATGTGTAtacatt
ttagaaattttctgtccgtccgtccgtccttTTACAAAGTTACGTAACAG
CTAATATTCAACTCAAATTTGAGCGTATTGAAAGAACTGTTTTACCGTGT
GTCCAAGAAAAAGCGGAACATAATTTACATGAAACGCTCATTTaattagc
aaattttattgAGATGccttgaagtttttacaagatacttcactaattgg
tcatttaaagtgatagagatgacgcgttctttagaaaaagtaataagatt
ctatttttacatcttaacgaccaaccaaatcaaataagagcttgtaaaaa
ctccagcttgtcccatttTATTACCTTCTCATTGGTTTCTCATGTTCAAA
ACCTGCCTTGAGTAGTAGTTAatcattttcaataaatttattCCAAACTT
GATGAGATGAAtgaattttatgaatttatGCCCATATAAAATCTGTTCTA
CTTTTTATTCGGACACACTGATCAAACCTTTTTCTTACGTCATATTCAAA
GCttgtttgcaaaaaaatacGAGTCTCCCATATTCCCATACCGTATGATA
ATAACTTAATAAATTTTAAaccatttttttttgtaaatttttctgtTGTT
GAATGCTACGGAGTactgtttttgtttcttttgtcttatatatacatttt
tttttgtttagctAGTCTGTGTCTGAATCGAAAATCAATAAATTTGTGTg
tttgtttattaattttcagcttATAAAATAATGGataataaaatgacatt
ttatacGTATATTATCTTTGTCTTAATTATTTTCCACACCAGAAACTTGC
TCTTCTTAAGTTCCCTTCTAGCtttcaatttctcaaaaattaattcTTTA
TTTCAGAATATTCTACTCACTCCAAtcaatatcttttcaacgaa
Run BLAST on NCBI

protein sequence of LIM and SH3 domain protein

>TCONS_00016925-protein ID=TCONS_00016925-protein|Name=LIM and SH3 domain protein|organism=Clytia hemisphaerica|type=polypeptide|length=280bp
MNPPCARCNKTVYPTEKLNCLDKIWHKGCFKCESCGMTLNMKNYKGYKKL
PYCSAHYPTTKFTAVADTPENLRLKKNTTNQSGAVYQKEFIKEKGKFTAV
TDDPETMRTRKTQQQASGVVYQKDFIKEKGKVTSVTDDPETMRTKKTQQQ
ASDLSYRGTAPPGSREADGSSSSLEDTRYTPRSEPVHQAPAPTYDPEPEY
EPEPEPEPEPEPALPEPAAGGSGGRYVAIYDYAAADEDEVSFQEGDIIIN
GESIDAGWMTGTVERTGESGMLPSNYVEEA
Run BLAST on NCBI

transcript from alignment at sc0000254:40520..52067-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016925 ID=TCONS_00016925|Name=TCONS_00016925|organism=Clytia hemisphaerica|type=transcript|length=11548bp|location=Sequence derived from alignment at sc0000254:40520..52067- (Clytia hemisphaerica)
ATAAGCAACACATTTTCAAAGACATTAAGAAAATTTGACTCATAAAATAA
TATTGATTTAATAGAAAGCACTGTGATCTCAACTTTAAGAAGATTTTTTA
AGTGTCAAATTTTAAAAGAATGTTTTCATAAATTTATCAGCACTGTGTTA
GCATCTATACCAGTTGCCGCATAAACTGACAAAGTGGCATGGACCCGAAT
CAACTCCCTCATTTCGAACTTGGTATTTCGGTATAGGAGGTGGCTAAACA
ATTTGTGTCATAGAGTTTGTTTGTAACGTTTCACGTTGACTTGTCAACTG
GATATTGCAATTTATCTTGGAGATATCAATTTGTAAAGATGAATCCTCCT
TGTGCACGTTGCAATAAGACTGTATATCCTACAGAGAAATTAAATTGTCT
GGATAAAATATGGCACAAGGGTTGTTTCAAATGCGAATCTTGTGGTATGA
CCTTGAACATGAAAAACTACAAGGGATACAAGAAGCTTCCATACTGTAGT
GCTCACTATCCCACTACCAAGTTTACAGCTGTTGCTGATACTCCAGAAAA
TTTGCGTTTGAAGAAAAATACAACAAATCAGAGTGGGGCTGTTTACCAGA
AAGAATTTATTAAGGAAAAGGGAAAGTTTACGGCTGTTACTGATGACCCT
GAAACCATGAGAACAAGAAAGACACAGCAACAAGCCAGCGGCGTTGTATA
TCAAAAAGATTTCATTAAGGAAAAGGGAAAAGTTACATCTGTTACTGATG
ACCCTGAAACAATGAGAACGAAGAAAACACAACAACAAGCTAGCGATCTT
TCATACAGGGGTACTGCACCACCAGGATCTCGAGAAGCTGATGGTAAATT
ATTTACAACATTTTCAACATATTCTACATGGTGTCAATTAAACATAGCCA
GATAGAAAACACAATTGATAAATTGAAGTTCAAATCCAGGCGGTGTCAAT
CGAACAACTTTGAACAAAAATCGCAATTGAACGTAATCGAATGTAATCGA
ACGCGATCGAATAATTGTGATTCAATTGTTGAACGTGATCGAATCTCAAT
CAAACGGCCGATTCCTTGGCTGGTAATATTCAATTGTGTTTGATTGCGTT
CGAGTAAGGTTAGATTGGTTCGAATAATAGTTAACTATGTTCCACCGGTA
TTGATTGTCAATTACATTCGATTAATCTTCAATTACGATTGTGTTCGATG
AGTTTGATTGTGATTGAATTAAATTGGATCACTCCGATAGAGCTTTTTAG
CGTGGGCGACCGAGCGCTTTAAGTATGGTACGAAAGCGAATAAAATCTAA
ATCAATCGAACGTAATCGAACATAATCGAATACAATCGAACGTAATCAAA
GCAATCGAACCGCAAATCCTGGATAATATTCGATTGCAATTATTCGATTG
TGTTCAATTGCGTTCAATTGATTCGGCGTTTGATTTGTTCAATTGACACC
GTCTGGTCAATTGTTGGTTCATTCACGATCACGGCAACTCAAATTAGAAA
ATTACTAGCTACCAATTCACATCCTAATATAATTGTAGTACAATTATATT
AGGATGTGAATCGGTCTTATTGTATGTTTCATAGATATGCTCATGGCAGG
CATAGAAAAATTGTTCTGTTTGCCTCACCTGTCCGCATCATGTTTTCCTC
TGACTTTCCTGTGCAGCAGAGCTAAGTGAGAAGAATTTTGAAAAGGCAAA
TTGTTTTTTAATATATAACGGTGTCAATCGAACGAATCAAACTGCGAATC
AATTGAACGAACACAATCAAATAATTGTCATTTGATTGCTGAGCGCAATC
GTATCGTAATCAACTATTACCCAGGATTTGCTATTCGATTTCTTCGATTA
CGTTCAATTGCATTCACTCACATTAATCACTCTCGTCTTGTAAGGTACTT
GCACGCTCGCTCTTACTTGATTTTCCAATTGGCTCTTCCCTGCTCTTCCA
GAAAAAATTTGATATAGGGGGTGGACGACAGGAATGGTCAGATAAAAAAA
CACTCCAAATTTTTCCACCAATTAACTGATTTTTATTAGAAATCCAGTAG
TTTCGATTGTTTTTGTATTGGAAATCCAGGAATTTCAAAAAAAACTATTT
GCCTCAGAATTCTGCCGTCGTTCACCCCCTGTAACAGACTTAAACTGGAA
GAGCGCAATGGCGTATTGGCCGCCCAAGCTAAAGCTTCAAAGGTCTTTGT
AAGGTCATTGGTCGTTTGAAAAATGAAGGAATTCGATGGGGCAAATCTGA
CGTAACGGTTAAAAAAAAGTTAATTTATTTCGAAACTTTATTTTTTATGC
TTGAAGCTTTTTTAATGATGTAATGCAGGCAAAAATGATTGACAAAAATT
TTTTGCTCATTTTCACAGGAAAGTCGACATCGACGGCTAATTTAATTGAA
ATCAATATCTTATTGAACTAATCGAACATAATCAAATCTCAATCGTACAT
AGTTCGACTGCAATTGAATATTACTCAGAAATTGGCTGTTTGATTGAGAT
CCGATTGTGTTCAACAATCGTATCGCAATTGTTCCATCGCCTTTGATTGA
CACCATCTGGATATATAGCTTTTTTATTTAGCTTTTCTTCACAGAACACG
ACTGCAGGTGGAGAAAAACGTTACTTTATTTTAGCTATACACAACAAAAT
ACAACAAGGTGGGCGGATGAAAAGAAAATGGCATACTTTCTAATAATCAC
CTCTTCAATCAATTTTCAAAAATTTTATCGCAGCATGCACCGTCATCCTT
GAAAAAATTACCATTTGATAGTTCCTTGAGATTTTCCCAGACATTTATTT
ATCCGGAATTAAATCCTAGGTCCTCCTCTCTTGTAATTATGTCACTCAGC
CAAGTGGAATACTACACCCATGTTTAGAACTGGGGCGAACCCGAAAAATA
TTTTTGTTTCCGGTCCACAGTGTGACAAAAAAACACTCACCTGGTCGGCT
GCGAAAAAATCTTTTTTGTTCCCAAGCTGGTCCTCTTTCAAATGAAATAA
AAAAATTTCAGATTTTGAGGACTTTTTAATTGTCGATGTCGTCATTTTCT
GAGCTATTTTCCTTTAGCTTCCTCAAATATTGAATTTTAGGTAGATGTTG
TGATAATCCTTGGATAAATATCTTTCATTTGAGCCATATTTGAGCTTCTA
ATTTTCACTTTCATTTTCAAGCCCCAGTAAAAGTTATGACGTCACATGGG
GACCAGCAAAATGATCAACATTTTTCTCACCACTCGTTTTTGTGATCTAT
AGGCAACTACTTTTTTATTTTCTGGTTTACAGACATTTAGAGATGATTTT
TTGGACCGGAGGATGGAAGAAAAAATTAAAGTAAAATTATTTTCAAAATC
TAATGTCAGAGAAAATAAAAGATATATGCTTTGAGGAACCCAGAACACCA
GATATAAAAAAAAAGTTTGAAATGAAGCACATTTGAAAATGAGAGTTTGT
TGTACTCTTTTCCCTTCCTTTCCTTGCCCATATAGACTGAAGTTTTCTAA
AAAAAATCTTTCTCATAGGGGTTTGGAAGAGCAAAAATAAATTAAGGTTT
TCAAAATGTCAATTTTACTTTTATTTTATTTTTACAAAAAAAACGTCAGA
CCATAGACTGGAGTCGTTTATAATGCGTGCAATACTAATAATACCAATAC
TAATAATAATAATACGGGGTTTAGTTTGTATAAACGACTGGAAGAATCCG
GTGTTCCAGCCTTATAGATACAGGGGCTANNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NTTAAAGATACAGGGGCTAGCTACGCAGAAACTTGCGTAGCGAGAAAACA
ATTTATCAAGCAACAACAAACTCTCAAAACGAAATCGACTCAAATGAAAA
ACGTTCAATAAACAAATCCACACATATTTTTTTTCTCAAGAATTATTTTG
AGCAGGAAAAAATTATAATTGCAATATTGATACTTTTCTTTTGTTTGGAG
TTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNGTGTGCACAAAGGTTTCTAGACGACTAAAATTGTTCCATTCATTAC
TTTTTGCTTTATTTCTACTATGTATAAATTAGTCGTCTAGCTTGCTAGAC
TAGTCAGACCAGAAAATAAGTAATTGCCTTATAGACCTAATTGATTATTT
AAAAAAGTTAGTTTGCTTTTAAAAAGTCTGTGCACACAAAAAGACATTGT
AGCTCTCACTACAATGTAGTGAGAAGTTCAGAATTGGAATTTCAGAATCA
CCGATCGAAAAAGTTTTGTTTTTCTCTGACCGCTAAGAAAAGAAGCAGCT
TCAAACAGGGATTCCGACATCCCTATTATTCCCAGCTCTAAAACAGAGTG
TCAGAATTACATGAAGGATGTTGATTCTAGACCAAATTATGGTAAGCACC
AAAATACAAATCCCTGCCCCATTACAAAGAATTGGTAAAATTTAACACAA
TGATCCAGGGGGGGGGCACGCAGTTACTACAAGACAGTATGACACTTACT
ACCGTGGTGGTACTGTATTCAGAAGTTATGAAAACAGTTACTACACAGTG
TAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNCTAATAATAATAATACGGGGTTTAGTTTGTATAAACG
ACTGGAAGAATCCGGTGTTCCAGCCTTATAGATACAGGGGCTAGCTACGC
AGAAACTTGCATGGCCCCCGTCACCGGAGGGGCCAGGGGGGCCATGGNAG
TAAGTGCTTATATTTTAATTCTTTTTAAAGAACTTTCAAAATTTTTCACA
AAAAATGATTTTTTTTGTGAAAAAATTCTTTGTTAAAAAAGATATTTTTG
TTATAAATGGACGAAAAAAAAATTTGAAATTTTTCTCAGACCCAACTTTG
AAATTATGCTTTCCCTAATTATCATTAAAATGTTCTCAACAGCTGTTAAC
CAAGTAAATTAAAAGAAAATATAGCACAAAAATGGCTTTAGGTTGAAAAA
TAATCGCAATTTAGGGTAATTTCGAGCATGTTTTTGATGATATCACTCAA
AAACAGGGGTGGTACCTGGAAATCTTTTCTGAAAACAGTTACTACCAAGG
TGTAGTAACTGCAAAGGGTGATGGTCCTGAAAAAAAGTGTTGAAAAAGCA
CTTACTACACATCATGTCTTGTAGTAACTGCGTGCCCCCCCCCCTGAATG
ATCAGCTAAAAACATGTACATAAATCCTGTATTTCATATTTCATATTTAA
AGGGACATAAAAGTACTGACAAAATTTGTAAACAAACTGTATTCAACGGG
ATACAAAATCAAAACAAATGTCACATGTCAAAATAAAAAAAAATAAAAAA
TATGGTTGATTTTGATTGTTTCAATTGTTTTACAAGTTTGTTTTGAACGC
GTGATTTTAATTGTTCTCTTTAAAATGACACGTGGTTCACGCAATGTTTG
CGTTTTACTACTTTAATGTCCCTTTAACATGTGAAAAAAGAAAACAAAGA
AAAATGACACAATTAATGGAAAGAGAAAAGTTTGTCAATATTTTTCAAGT
TGAAAATAAACCAGTGATCACACTTTTACCCAAGTACAATATTTTGCCTA
AAAATATGATTAAAAATCTGAACTTCTGAATAATATATTCAATATTGCAC
TTTGTACTGTGCCACAACTATTACTTTGATTGTGTCTGAAAATCAACAAT
GGAGATTTCTGGTTGTTACAGTACTTTGCAAAGCAGAAACTACAAAACAA
ACCAATGCTTTAGAAAATATCTCAGGATTCTAATTTTGACTCAAATTTTT
ACTTAATTGATTGAGGTACTTTAATATTACACTAATGATGCAGATTGTAA
TATTGAAAATTCTCTAGTAATACTTTTAAATACCCTGCAAATACCTGCTG
TAGTTGACACATGTTGATACAAAATAGTCATTTACAAGCAAAATTATACA
AATAAAACACCTTTTTTATATTCCTTTCTCTATCCCTCCTTTAGGTTCAT
CTTCTTCACTTGAAGATACCAGATATACACCACGTTCAGAGCCAGTACAT
CAAGCACCAGCACCCACATATGATCCAGAACCAGAGTACGAGCCTGAGCC
AGAACCCGAACCTGAACCCGAGCCAGCGTTACCTGAACCAGCAGCGGGAG
GGAGTGGTGGAAGATATGTTGCAATTTATGATTATGCTGCAGCTGATGAG
GACGAGGTAATGTTTTTATGAGTGCAGCTGTCTTCTACACATTGGGCTTA
CAAGGTGAATCATTTGAATCGGATAGCACCTGCACTGCGTAAAATATGCA
GATGTTTATCAGTGTCACAAAAATAAATTTTACAAAAAGTAAAACGCTGA
TAAGTTAAAACATTTTTTTATGTTTTTTTGGATAATTGCAATCGACTTTT
AAAATTTGTCACATCAATATAAAACTTGATTCAATAAAAAAATGCTATAG
CATAAGATTTTTTCGTAAAATTCAGCCCGATATTGCGAGAGAAAAAAACA
AGAAATGGCCCATCGCCTCTTGAGGTCAAGAAATGAACATGAAGGGATTA
TGGGGGGAATGTTATGCACACTTTATTCCACATCTCCATCTGAATTACTA
TACAACATTTCAAGTGATTTGGACAAGGGATTCAGATTTTATGGCAATTT
GAAATTTTAAGATTTAGACACTTTGGGGCGGTTGTAATAGTAGGGGGAAA
TTTGTTTTTTTTAGGTCGTTCGGTTGTTTTGGTCAAAGCACTTGTTAGGC
GAGACCAATTTGATTCGTTGTTTTACGGGCCCGACTAGACTGGAGTCGTT
TATAATGCGCGTAATACTAATAATACCAATACTAATAATAATAATACGGG
ATTTAGTTTGTATAAACGACTGGAAGAATCCGGTGTTCCAGCCTTATAGA
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAACTCTCAAAACGAAATCA
ACTCAAATGAAAAACTTTCAATACACAAATCCACACATATTTTTTTTCTC
AAGAATTATTTTGAGCAGGAAAAAATTATAACTGCAATATTGACACTTTT
CTTTTGTTTGGAGTTAGTGCACAAAGGTTTCTAGACGACTAAAATTGTTC
CATTCATTACTTTTAGCTTTATTTCTACTATGTATAAATTAGTCGTCTAG
CTTGCTAGACTAGGGCCCGACTGACCCTGAAATCACATACTTTAAAGGCA
GAAAGTTTCGCAAAGTTTAAAAGTTTCGCAAATTATGGTTTTATCCGAAA
TTTCACAGATAGAAATTTCGCGAATTCCTATAAAATTTACCTTTTTTGAT
AACAAAAACTCATAAAACACGCAAAAATTTAGCAAACAGTGCAAAAAAGT
TTATTTTTCGCGAAAAAAAGTTTCGCTTTTTTCAAGTTTAATTTCTTACC
TGGAAGAAACTGTCGCGGGAAAAGATCAAAATCGCGAAAGTTTCTGCCCT
TAAAGGGACATAACAGTACTTGCGAAATTTGTAAACAAACTGTATGCAGC
GGATACAAAATCAAAACAAATGTCACATGTCAAAATAAAAAATAAAACTA
AATATGGCTAATTTTGATTGTTCAATTGTTTTACAAGTTTGTTTTGGACA
CGTGATTTTAATTGTTCTCTTTAATGACACGTGGTTCGCGCAATGTTTAC
ATTTTACTACTTTAATGTCCCTTTAAAGTAAACTGAAATAAAAATAAAGT
TTATTTTGGTTGTACATTTTATTTTTATTGCTTTACAGACTGCAAAAGTT
TCAAAACTTTGGTATTTTTCCAAGGTTTTGAGAATTTCATGTTCAATTTT
TCATTTTATCCATGAATTCGAGCTCTTTGTGTCTTTTTATTTTATATTTC
GCATTTTTATCAAAATGTAGTAGTTTTTGCTCCCTTTTTAGGAGGTTTTA
TAGGAGAAATTCTACTTTTATTTTTAATTTTTCGCCGACCGACCGACCCT
CTTTTTTGGGTAGCTTGACCTGTAAAACAACAAATTTAATTGGTCTCGTC
TTATACATTTTTGGAAAGCTAAGGGGTAGGGGAATCAAAATAACTTAGTT
TCCAAATTTTTTTTCGGACACTTTCGGACACAATCGAGCGATATTACAAA
ATGCCCTCTACTATAATATTTGGATTTCTTTTTTAATATCCACCATGTGT
TTGGGTAAGTTTGTGGAGAAGGAAAAATTTGAAAGAATTGGGCAAGTGGT
TGAAATTCAGCAGAAAAAAACATGGGGGGTGTTCCCCACCGAGCAAGTAG
GATTAAAGGCATTAAATGATTTTAGTAAAGGTCAGTGTGAGGTTTGGGGT
GGACAACATGGTGTGAACCCCCCCCCCCAACCAACCAACCTTCTTTAATA
AAAGATTTTTGTCTTTGGCGTTAGAGAAATTTAAATTTTTTGCTTTTTAT
GAACGGTTGGTAAACTTCGACTGTAAATTGTGTGGGCAAGTGATATTTTT
AAATAGGGGAATGGTCCAGGGTTTCAGACCCCTTTCCACAATGTTAAGTT
ACACTGGATCTATTTAGGGTCAGATCAGTGCTGGCAACTGCAATGGTAGG
GACCTAGCCCCCAGGTAAGCATAATGGTTTTTTGAAAAACCTCTTGCCCT
CTCATTTTTGAAAATTTTTTTGAAGCCTCAAGTCCCCAATTTCATGCGTT
TTTTCCTAAACCTTGACATTTTTGAATAAAAAAAAGTCATTTCTCTGAAA
AAGACAAGGTAGCTTCTGGATAAATTTCAAATTCACCTCTCATTAGGGCT
AGAAGTAAGGTTCTTGACGAAGATATCTGTAAATTGAAAACTTATAGTCT
ATTAGTAGTTTTTGTCGCCATGACCCAATGGGTTTGTGGTCAAGATGTTT
GGTTTCTAATCATAATTAGCTTCTGAACATAACTAAGAGTACACTTAGAA
AATATTTGAACTGTCTAAGAGAGAAACTCAGATTGAAGGAAGGAAAAAAA
CCTGTCGATCTAAATATTTTATTTCCATTTTAAAGAAGAATTTTGAATTA
GGCTGACTTGGTTTTCATGTTGCAGCAATAAATAGTGCATACTTAAAGTG
AATGGGTTTTAAATATGGCGTCGAATAGCCTTTAATATTCGACCTTCCCA
ATTTTTCAGGTGTCTTTCCAAGAAGGAGACATTATCATTAACGGCGAATC
GATCGACGCCGGATGGATGACGGGAACTGTCGAACGCACTGGCGAAAGCG
GTATGTTGCCCTCCAATTACGTCGAAGAAGCTTAAAAATTTTGCATCAAA
ATCAAGTATACGTTCACACATGAAAAAGCAAAGTTAAAAAATATTTTTTA
TGTTAATAATTTTTTTTGTTTCATTTTTTTTTTTTTCTTCATAACACGTT
TTAGAGAAAACTCTTTTTCATATATATCTCTTACTTTTTGGCTGTTTCTA
AACAGTTTTAAATAACCATATTAAAGTTGAAAGTTCTTTATTGAGAGAAA
AATTTTGTTGTGTAAATTCGTAATTAAACCCAATTGACTTTCATTGAGTC
ACGTAAACATTTTTCCCCGTTTATTTTTTGTGCTTTTTTTTATGTGTATA
CATTTTAGAAATTTTCTGTCCGTCCGTCCGTCCTTTTACAAAGTTACGTA
ACAGCTAATATTCAACTCAAATTTGAGCGTATTGAAAGAACTGTTTTACC
GTGTGTCCAAGAAAAAGCGGAACATAATTTACATGAAACGCTCATTTAAT
TAGCAAATTTTATTGAGATGCCTTGAAGTTTTTACAAGATACTTCACTAA
TTGGTCATTTAAAGTGATAGAGATGACGCGTTCTTTAGAAAAAGTAATAA
GATTCTATTTTTACATCTTAACGACCAACCAAATCAAATAAGAGCTTGTA
AAAACTCCAGCTTGTCCCATTTTATTACCTTCTCATTGGTTTCTCATGTT
CAAAACCTGCCTTGAGTAGTAGTTAATCATTTTCAATAAATTTATTCCAA
ACTTGATGAGATGAATGAATTTTATGAATTTATGCCCATATAAAATCTGT
TCTACTTTTTATTCGGACACACTGATCAAACCTTTTTCTTACGTCATATT
CAAAGCTTGTTTGCAAAAAAATACGAGTCTCCCATATTCCCATACCGTAT
GATAATAACTTAATAAATTTTAAACCATTTTTTTTTGTAAATTTTTCTGT
TGTTGAATGCTACGGAGTACTGTTTTTGTTTCTTTTGTCTTATATATACA
TTTTTTTTTGTTTAGCTAGTCTGTGTCTGAATCGAAAATCAATAAATTTG
TGTGTTTGTTTATTAATTTTCAGCTTATAAAATAATGGATAATAAAATGA
CATTTTATACGTATATTATCTTTGTCTTAATTATTTTCCACACCAGAAAC
TTGCTCTTCTTAAGTTCCCTTCTAGCTTTCAATTTCTCAAAAATTAATTC
TTTATTTCAGAATATTCTACTCACTCCAATCAATATCTTTTCAACGAA

Coding sequence (CDS) from alignment at sc0000254:40520..52067-

>TCONS_00016925 ID=TCONS_00016925|Name=TCONS_00016925|organism=Clytia hemisphaerica|type=CDS|length=2529bp|location=Sequence derived from alignment at sc0000254:40520..52067- (Clytia hemisphaerica)
GTGTCTTTCCAAGAAGGAGACATTATCATTAACGGCGAATCGATCGACGC
CGGATGGATGACGGGAACTGTCGAACGCACTGGCGAAAGCGGTATGTTGC
CCTCCAATTACGTCGAAGAAGCTTAAGTTCATCTTCTTCACTTGAAGATA
CCAGATATACACCACGTTCAGAGCCAGTACATCAAGCACCAGCACCCACA
TATGATCCAGAACCAGAGTACGAGCCTGAGCCAGAACCCGAACCTGAACC
CGAGCCAGCGTTACCTGAACCAGCAGCGGGAGGGAGTGGTGGAAGATATG
TTGCAATTTATGATTATGCTGCAGCTGATGAGGACGAGATGAATCCTCCT
TGTGCACGTTGCAATAAGACTGTATATCCTACAGAGAAATTAAATTGTCT
GGATAAAATATGGCACAAGGGTTGTTTCAAATGCGAATCTTGTGGTATGA
CCTTGAACATGAAAAACTACAAGGGATACAAGAAGCTTCCATACTGTAGT
GCTCACTATCCCACTACCAAGTTTACAGCTGTTGCTGATACTCCAGAAAA
TTTGCGTTTGAAGAAAAATACAACAAATCAGAGTGGGGCTGTTTACCAGA
AAGAATTTATTAAGGAAAAGGGAAAGTTTACGGCTGTTACTGATGACCCT
GAAACCATGAGAACAAGAAAGACACAGCAACAAGCCAGCGGCGTTGTATA
TCAAAAAGATTTCATTAAGGAAAAGGGAAAAGTTACATCTGTTACTGATG
ACCCTGAAACAATGAGAACGAAGAAAACACAACAACAAGCTAGCGATCTT
TCATACAGGGGTACTGCACCACCAGGATCTCGAGAAGCTGATGGTGTCTT
TCCAAGAAGGAGACATTATCATTAACGGCGAATCGATCGACGCCGGATGG
ATGACGGGAACTGTCGAACGCACTGGCGAAAGCGGTATGTTGCCCTCCAA
TTACGTCGAAGAAGCTTAAGTTCATCTTCTTCACTTGAAGATACCAGATA
TACACCACGTTCAGAGCCAGTACATCAAGCACCAGCACCCACATATGATC
CAGAACCAGAGTACGAGCCTGAGCCAGAACCCGAACCTGAACCCGAGCCA
GCGTTACCTGAACCAGCAGCGGGAGGGAGTGGTGGAAGATATGTTGCAAT
TTATGATTATGCTGCAGCTGATGAGGACGAGATGAATCCTCCTTGTGCAC
GTTGCAATAAGACTGTATATCCTACAGAGAAATTAAATTGTCTGGATAAA
ATATGGCACAAGGGTTGTTTCAAATGCGAATCTTGTGGTATGACCTTGAA
CATGAAAAACTACAAGGGATACAAGAAGCTTCCATACTGTAGTGCTCACT
ATCCCACTACCAAGTTTACAGCTGTTGCTGATACTCCAGAAAATTTGCGT
TTGAAGAAAAATACAACAAATCAGAGTGGGGCTGTTTACCAGAAAGAATT
TATTAAGGAAAAGGGAAAGTTTACGGCTGTTACTGATGACCCTGAAACCA
TGAGAACAAGAAAGACACAGCAACAAGCCAGCGGCGTTGTATATCAAAAA
GATTTCATTAAGGAAAAGGGAAAAGTTACATCTGTTACTGATGACCCTGA
AACAATGAGAACGAAGAAAACACAACAACAAGCTAGCGATCTTTCATACA
GGGGTACTGCACCACCAGGATCTCGAGAAGCTGATGGTGTCTTTCCAAGA
AGGAGACATTATCATTAACGGCGAATCGATCGACGCCGGATGGATGACGG
GAACTGTCGAACGCACTGGCGAAAGCGGTATGTTGCCCTCCAATTACGTC
GAAGAAGCTTAAGTTCATCTTCTTCACTTGAAGATACCAGATATACACCA
CGTTCAGAGCCAGTACATCAAGCACCAGCACCCACATATGATCCAGAACC
AGAGTACGAGCCTGAGCCAGAACCCGAACCTGAACCCGAGCCAGCGTTAC
CTGAACCAGCAGCGGGAGGGAGTGGTGGAAGATATGTTGCAATTTATGAT
TATGCTGCAGCTGATGAGGACGAGATGAATCCTCCTTGTGCACGTTGCAA
TAAGACTGTATATCCTACAGAGAAATTAAATTGTCTGGATAAAATATGGC
ACAAGGGTTGTTTCAAATGCGAATCTTGTGGTATGACCTTGAACATGAAA
AACTACAAGGGATACAAGAAGCTTCCATACTGTAGTGCTCACTATCCCAC
TACCAAGTTTACAGCTGTTGCTGATACTCCAGAAAATTTGCGTTTGAAGA
AAAATACAACAAATCAGAGTGGGGCTGTTTACCAGAAAGAATTTATTAAG
GAAAAGGGAAAGTTTACGGCTGTTACTGATGACCCTGAAACCATGAGAAC
AAGAAAGACACAGCAACAAGCCAGCGGCGTTGTATATCAAAAAGATTTCA
TTAAGGAAAAGGGAAAAGTTACATCTGTTACTGATGACCCTGAAACAATG
AGAACGAAGAAAACACAACAACAAGCTAGCGATCTTTCATACAGGGGTAC
TGCACCACCAGGATCTCGAGAAGCTGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009480XLOC_009480Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
LIM and SH3 domain proteinTCONS_00016925-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016925-exon-sc0000254-1575043694:51225..52067TCONS_00016925-exon-sc0000254-1575043694:51225..52067Clytia hemisphaericaexon
TCONS_00016925-exon-sc0000254-1575043694:44912..45123TCONS_00016925-exon-sc0000254-1575043694:44912..45123Clytia hemisphaericaexon
TCONS_00016925-exon-sc0000254-1575043694:40520..41858TCONS_00016925-exon-sc0000254-1575043694:40520..41858Clytia hemisphaericaexon
TCONS_00016925-exon-sc0000254-1510915933:51225..52067TCONS_00016925-exon-sc0000254-1510915933:51225..52067Clytia hemisphaericaexon
TCONS_00016925-exon-sc0000254-1510915933:44912..45123TCONS_00016925-exon-sc0000254-1510915933:44912..45123Clytia hemisphaericaexon
TCONS_00016925-exon-sc0000254-1510915933:40520..41858TCONS_00016925-exon-sc0000254-1510915933:40520..41858Clytia hemisphaericaexon
TCONS_00016925-exon-sc0000254-1491911889:51225..52067TCONS_00016925-exon-sc0000254-1491911889:51225..52067Clytia hemisphaericaexon
TCONS_00016925-exon-sc0000254-1491911889:44912..45123TCONS_00016925-exon-sc0000254-1491911889:44912..45123Clytia hemisphaericaexon
TCONS_00016925-exon-sc0000254-1491911889:40520..41858TCONS_00016925-exon-sc0000254-1491911889:40520..41858Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000254supercontigsc0000254:40520..52067 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
213.236	195.299	368.32	382.515	190.953	145.558	207.903	224.327	179.155	199.564	151.89	154.077	212.292	226.972	170.503	176.267	196.527	212.89	164.416	160.698	155.955	156.14	124.217	136.733	130.762	112.682	151.271	168.306	132.206	144.078
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001452SH3_domain
IPR001781Znf_LIM
IPR000900Nebulin_repeat
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00016925 vs. Swiss-Prot (Human)
Match: LASP1 (LIM and SH3 domain protein 1 OS=Homo sapiens GN=LASP1 PE=1 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 5.837e-67
Identity = 136/280 (48.57%), Postives = 166/280 (59.29%), Query Frame = 3 
Query:  339 MNPPCARCNKTVYPTEKLNCLDKIWHKGCFKCESCGMTLNMKNYKGYKKLPYCSAHYPTTKFTAVADTPENLRLKKNTTNQSGAVYQKEFIKEKGK-FTAVTDDPETMRTRKTQQQASGVVYQKDFIKEKGKVTSVTDDPETMRTKKTQQQASDLSYRGTAPPGSREADGSSSSLEDTRYTPRSEPVHQXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXXXGGSGGRYVAIXXXXXXXXXXVSFQEGDIIINGESIDAGWMTGTVERTGESGMLPSNYVE 1172
            MNP CARC K VYPTEK+NCLDK WHK CF CE+C MTLNMKNYKGY+K PYC+AHYP   FT VADTPENLRLK+ +  QS   Y++EF K KGK F+ V D PE  R +KTQ Q S + Y ++F  EK ++     +                   G  P      DGSS      +  P   P           +P  +     +      ++   A GG G RY A+YDY+AADEDEVSFQ+GD I+N + ID GWM GTVERTG++GMLP+NYVE
Sbjct:    1 MNPNCARCGKIVYPTEKVNCLDKFWHKACFHCETCKMTLNMKNYKGYEKKPYCNAHYPKQSFTMVADTPENLRLKQQSELQSQVRYKEEFEKNKGKGFSVVADTPELQRIKKTQDQISNIKYHEEF--EKSRMGPSGGE-------------------GMEPERRDSQDGSSYRRPLEQQQPHHIPTSAPVYQQPQQQPVAQSYGGYKEPAAPVSIQRSAPGGGGKRYRAVYDYSAADEDEVSFQDGDTIVNVQQIDDGWMYGTVERTGDTGMLPANYVE 259
The following BLAST results are available for this feature:
BLAST of TCONS_00016925 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LASP15.837e-6748.57LIM and SH3 domain protein 1 OS=Homo sapiens GN=LA... [more]
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