LIM and SH3 domain protein (polypeptide) - C. hemisphaerica

Overview
NameLIM and SH3 domain protein
Unique NameTCONS_00016925-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length280

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00016925-protein ID=TCONS_00016925-protein|Name=LIM and SH3 domain protein|organism=Clytia hemisphaerica|type=polypeptide|length=280bp
MNPPCARCNKTVYPTEKLNCLDKIWHKGCFKCESCGMTLNMKNYKGYKKL
PYCSAHYPTTKFTAVADTPENLRLKKNTTNQSGAVYQKEFIKEKGKFTAV
TDDPETMRTRKTQQQASGVVYQKDFIKEKGKVTSVTDDPETMRTKKTQQQ
ASDLSYRGTAPPGSREADGSSSSLEDTRYTPRSEPVHQAPAPTYDPEPEY
EPEPEPEPEPEPALPEPAAGGSGGRYVAIYDYAAADEDEVSFQEGDIIIN
GESIDAGWMTGTVERTGESGMLPSNYVEEA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009480XLOC_009480Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00016925TCONS_00016925Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001452SH3_domain
IPR001781Znf_LIM
IPR000900Nebulin_repeat
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001452SH3 domainPRINTSPR00452SH3DOMAINcoord: 268..280
score: 42.59
coord: 224..234
score: 40.75
coord: 238..253
score: 32.32
IPR001452SH3 domainSMARTSM00326SH3_2coord: 224..280
e-value: 4.3E-15
score: 66.1
IPR001452SH3 domainPFAMPF00018SH3_1coord: 227..274
e-value: 8.8E-14
score: 50.7
IPR001452SH3 domainPROSITEPS50002SH3coord: 221..280
score: 16.528
IPR001452SH3 domainSUPERFAMILY50044SH3-domaincoord: 198..279
IPR001781Zinc finger, LIM-typeSMARTSM00132lim_4coord: 4..56
e-value: 1.9E-13
score: 60.6
IPR001781Zinc finger, LIM-typePFAMPF00412LIMcoord: 5..58
e-value: 6.0E-12
score: 45.5
IPR001781Zinc finger, LIM-typePROSITEPS00478LIM_DOMAIN_1coord: 5..39
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 3..63
score: 13.048
IPR000900Nebulin repeatSMARTSM00227nebu_4coord: 62..92
e-value: 5.0E-4
score: 29.4
coord: 132..162
e-value: 1.2
score: 18.2
coord: 97..127
e-value: 0.0038
score: 26.4
IPR000900Nebulin repeatPFAMPF00880Nebulincoord: 67..95
e-value: 4.6E-5
score: 23.2
coord: 102..130
e-value: 2.5E-4
score: 20.8
IPR000900Nebulin repeatPROSITEPS51216NEBULINcoord: 61..95
score: 10.506
coord: 131..157
score: 9.409
coord: 96..130
score: 11.394
NoneNo IPR availableGENE3D2.30.30.40coord: 187..280
e-value: 4.9E-20
score: 70.5
NoneNo IPR availableGENE3D2.10.110.10coord: 1..176
e-value: 1.1E-16
score: 60.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 131..224
NoneNo IPR availableCDDcd09447LIM_LASPcoord: 5..57
e-value: 3.23465E-37
score: 126.721
NoneNo IPR availableCDDcd11789SH3_Nebulin_family_Ccoord: 225..278
e-value: 2.5932E-36
score: 124.352
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 2..30

Blast
[Close]
BLAST of LIM and SH3 domain protein vs. Swiss-Prot (Human)
Match: LASP1 (LIM and SH3 domain protein 1 OS=Homo sapiens GN=LASP1 PE=1 SV=2)

HSP 1 Score: 253.447 bits (646), Expect = 1.928e-84
Identity = 138/280 (49.29%), Postives = 167/280 (59.64%), Query Frame = 0 
Query:    1 MNPPCARCNKTVYPTEKLNCLDKIWHKGCFKCESCGMTLNMKNYKGYKKLPYCSAHYPTTKFTAVADTPENLRLKKNTTNQSGAVYQKEFIKEKGK-FTAVTDDPETMRTRKTQQQASGVVYQKDFIKEKGKVTSVTDDPETMRTKKTQQQASDLSYRGTAPPGSREADGSSSSLEDTRYTPRSEPVHQAPAPTYDPEPEYEPE-PEPEPEPEPALPEPAAGGSGGRYVAIYDYAAADEDEVSFQEGDIIINGESIDAGWMTGTVERTGESGMLPSNYVE 278
            MNP CARC K VYPTEK+NCLDK WHK CF CE+C MTLNMKNYKGY+K PYC+AHYP   FT VADTPENLRLK+ +  QS   Y++EF K KGK F+ V D PE  R +KTQ Q S + Y ++F  EK ++     +                   G  P      DGSS      +  P   P           +P  +      EP    ++   A GG G RY A+YDY+AADEDEVSFQ+GD I+N + ID GWM GTVERTG++GMLP+NYVE
Sbjct:    1 MNPNCARCGKIVYPTEKVNCLDKFWHKACFHCETCKMTLNMKNYKGYEKKPYCNAHYPKQSFTMVADTPENLRLKQQSELQSQVRYKEEFEKNKGKGFSVVADTPELQRIKKTQDQISNIKYHEEF--EKSRMGPSGGE-------------------GMEPERRDSQDGSSYRRPLEQQQPHHIPTSAPVYQQPQQQPVAQSYGGYKEPAAPVSIQRSAPGGGGKRYRAVYDYSAADEDEVSFQDGDTIVNVQQIDDGWMYGTVERTGDTGMLPANYVE 259
The following BLAST results are available for this feature:
BLAST of LIM and SH3 domain protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LASP11.928e-8449.29LIM and SH3 domain protein 1 OS=Homo sapiens GN=LA... [more]
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