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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016895 ID=TCONS_00016895|Name=TCONS_00016895|organism=Clytia hemisphaerica|type=transcript|length=2552bpRun BLAST on NCBI protein sequence of TCONS_00016895-protein >TCONS_00016895-protein ID=TCONS_00016895-protein|Name=TCONS_00016895-protein|organism=Clytia hemisphaerica|type=polypeptide|length=324bp MAPQAIMRKERMEDIYDIKEELGRGHFAVVKKCVCKSSNDDVAGKFIKVKRun BLAST on NCBI transcript from alignment at sc0000253:326399..332993- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016895 ID=TCONS_00016895|Name=TCONS_00016895|organism=Clytia hemisphaerica|type=transcript|length=6595bp|location=Sequence derived from alignment at sc0000253:326399..332993- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000253:326399..332993- >TCONS_00016895 ID=TCONS_00016895|Name=TCONS_00016895|organism=Clytia hemisphaerica|type=CDS|length=8775bp|location=Sequence derived from alignment at sc0000253:326399..332993- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00016895 vs. Swiss-Prot (Human)
Match: DAPK2 (Death-associated protein kinase 2 OS=Homo sapiens GN=DAPK2 PE=1 SV=1) HSP 1 Score: 259.996 bits (663), Expect = 6.033e-78 Identity = 149/306 (48.69%), Postives = 204/306 (66.67%), Query Frame = 1
Query: 70 MRKERMEDIYDIKEELGRGHFAVVKKCVCKSSNDDVAGKFIKVKKTRASRQGXXXXXXXXXXXXLQMINCDKVMKLYDVFDLGSEIVLVMELLTGGELFDKLCEEDYLTEEQACDYTKQVVQGMAYLHSKNIMHLDIKPENIVL--KSPDSTEIKLVDFGLAQLWSPDKEIKEMMGTAEFVAPEIVNYEKIGLCTDMWAVGVLAYILLSGESPFLGDDNQETFQNIAKAXXXXXXXXXXXXXXXXXXXVKGLLIKNPGKRTTAQDCLSHEWIKPKTNKFQMVR--VIIKTTRLKAFVARRKWQESL 975
+++++ED YDI EELG G FA+VKKC KS+ + A KFIK +++RASR+G R IERE IL+ + V+ L+DV++ +++VL++EL++GGELFD L +++ L+EE+A + KQ++ G+ YLH+K I H D+KPENI+L K+ IKL+DFGLA E K + GT EFVAPEIVNYE +GL DMW++GV+ YILLSG SPFLGD QET NI Y+FDEE F SE A DF++ LL+K KR T Q+ L H WI P N+ MVR ++ + RR+W+ S
Sbjct: 14 FKQQKVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDVVLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITAVSYDFDEEFFSQTSELAKDFIRKLLVKETRKRLTIQEALRHPWITPVDNQQAMVRRESVVNLENFRKQYVRRRWKLSF 319 The following BLAST results are available for this feature:
BLAST of TCONS_00016895 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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