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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016851 ID=TCONS_00016851|Name=TCONS_00016851|organism=Clytia hemisphaerica|type=transcript|length=825bp
CAAGGCTTTATGTATTTCTCGTTTGAGCCTGGGCATAACTTTGTGTGTTT
TTAGCCACGACTCGCCACGGATCTTGCCTTCGGCGACGTGTATTCCAGAA
CATATCCAAAACAGTTCTTGAATTTTCAATCCACTGATAACTAGCAAACA
CAGTTGTAGCAGCAGTTGGTTCATTCTTGCTTTTCATGTCATTTCAATGT
CCATATTTGCAGCCAGATCATGCGTTCAGTCGATCGAATTCCATCAATCG
AGAGCTGTCACCTAACAAGTGTGGAAATCCCTTCCGTAaggaatttttcg
aaaatcactgATCATCAATGTTGGTACGTATAACTCAGCAACCTTCTGTT
TCCTTGTATAGCATCCATCTAGCCTGTGATAAGATGAATGCTTCAAATTG
AAGAAACCAGACAAGGCCAGCGGCTGGAAGCTCAAAACCATTGACTTTGG
AGAATCGCCTGAGTTGAACAATGTCCAGCTTTAGCCTTGTCCATCGCCCA
TAAATGCGTTTCTTTCAtaaagctttaaaaagctttttcaagAAATTCAT
AAATGAGTGATTGTTTTTATAGTAAAGATAAagataaagatgaagatttg
ttttgttttgtgatCCCATGCTTGCCATCAGCTCCTCTGTAAGTCCAGTC
TCCGGTTGGCTCGGTTGGGCAGGGACGCCAATACCCTGGGATAGCTCCGA
GTTTCGGAAAGCTTTCCACCGTACCCCTGGACGATTGACTTGTTAAGTGA
TTGCCGATGACCAACGTCGAGAATttatagaattgaaatcaaaCCCTACT
GCTGTGAAAATTccttttatctttg Run BLAST on NCBI transcript from alignment at sc0000253:155598..157496+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016851 ID=TCONS_00016851|Name=TCONS_00016851|organism=Clytia hemisphaerica|type=transcript|length=1899bp|location=Sequence derived from alignment at sc0000253:155598..157496+ (Clytia hemisphaerica)
CAAGGCTTTATGTATTTCTCGTTTGAGCCTGGGCATAACTTTGTGTGTTT
TTAGTAAGTGAAATTTATGTCAACTAGGAACGGCAGCATGGTGTTAGCTC
AGTTGCTCAGTTGGTTTGGCGTACACCTTACAATATAAGGGTAAATCAAA
GTACATGTTTGAGACATAGTGGCTGCACCGAAATCTAATCCACTGGGAGG
ATGATGAATGAGAAATTAGCGTATCTCAAAGTTGTCTTAACGGAGTTCGG
CAATGATGTACACTGTAGCTATCAGTTTCCATCATTCAGACGGTCGTTTA
CAAATAGGAGGTTGTTAAATGTAGGCCAATATCAATCATAGTAACTAAAC
TGCATAGTTAGTGAAATTGTTAGAAATTTAACTTCATATTTAGTGCAAGT
TACCTTAGCCTGGGTAAAAAAATCAATGTTATCATCATGGagctaatgtt
tttttttctctaagcTAAACATCTGTCAGTTTTGTGGCCATGAAAACTTT
TACCGgtcctaaaaaaaaaattcaaaatcctaATTACTTTCGAATCAATC
ATATGCGGTCAAGGCAAAAGTTACGGGTCCTAAGGGTTGGactcctacta
ttctattgtGTCCATCTTTATCTTCTGCACCTATTTTTGGTCGAAAACAA
GTTTAAcacattattttgtttttttttggtagATGCAAGGAGTGATCCTC
CGCCTCCACCTTTTTTCATTCTTCCATCAAGTTTATCCACAATAAAGATC
TAATTACATGGTTTTCATAGATGAAAATATTATAGGTGATATTTACTAAA
AAGCTCAACGAACTTGTTGAAATTCGTCGCGTTTTTCAGTAGGTATCCCT
AAACAACCTAGAGAAAACCAAAGACTTCATTCAAACTCGAATCCAGTCCC
TTAGCTCACTtatttatgattctgatagcgctcacgatTGCATCACAAcc
atcagtaaaataaaaaaagtggaGCAAGTCTTTTTAGGTACGAGATTGAA
TTTCATTCTCGATATGCATTGAATTGAAGCCCCAGTTTATCTCCCGGTTA
AGTTAAATAAATACAGGCGTTAATATTTATGATGTTATTATAAATTTCag
tagttttattttgtttctttgGAACAGGCCACGACTCGCCACGGATCTTG
CCTTCGGCGACGTGTATTCCAGAACATATCCAAAACAGTTCTTGAATTTT
CAATCCACTGATAACTAGCAAACACAGTTGTAGCAGCAGTTGGTTCATTC
TTGCTTTTCATGTCATTTCAATGTCCATATTTGCAGCCAGATCATGCGTT
CAGTCGATCGAATTCCATCAATCGAGAGCTGTCACCTAACAAGTGTGGAA
ATCCCTTCCGTAaggaatttttcgaaaatcactgATCATCAATGTTGGTA
CGTATAACTCAGCAACCTTCTGTTTCCTTGTATAGCATCCATCTAGCCTG
TGATAAGATGAATGCTTCAAATTGAAGAAACCAGACAAGGCCAGCGGCTG
GAAGCTCAAAACCATTGACTTTGGAGAATCGCCTGAGTTGAACAATGTCC
AGCTTTAGCCTTGTCCATCGCCCATAAATGCGTTTCTTTCAtaaagcttt
aaaaagctttttcaagAAATTCATAAATGAGTGATTGTTTTTATAGTAAA
GATAAagataaagatgaagatttgttttgttttgtgatCCCATGCTTGCC
ATCAGCTCCTCTGTAAGTCCAGTCTCCGGTTGGCTCGGTTGGGCAGGGAC
GCCAATACCCTGGGATAGCTCCGAGTTTCGGAAAGCTTTCCACCGTACCC
CTGGACGATTGACTTGTTAAGTGATTGCCGATGACCAACGTCGAGAATtt
atagaattgaaatcaaaCCCTACTGCTGTGAAAATTccttttatctttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016851-exon-sc0000253-1491911889:155598..155650 | TCONS_00016851-exon-sc0000253-1491911889:155598..155650 | Clytia hemisphaerica | exon |
| TCONS_00016851-exon-sc0000253-1510915933:155598..155650 | TCONS_00016851-exon-sc0000253-1510915933:155598..155650 | Clytia hemisphaerica | exon |
| TCONS_00016851-exon-sc0000253-1575043694:155598..155650 | TCONS_00016851-exon-sc0000253-1575043694:155598..155650 | Clytia hemisphaerica | exon |
| TCONS_00016851-exon-sc0000253-1491911889:156725..157496 | TCONS_00016851-exon-sc0000253-1491911889:156725..157496 | Clytia hemisphaerica | exon |
| TCONS_00016851-exon-sc0000253-1510915933:156725..157496 | TCONS_00016851-exon-sc0000253-1510915933:156725..157496 | Clytia hemisphaerica | exon |
| TCONS_00016851-exon-sc0000253-1575043694:156725..157496 | TCONS_00016851-exon-sc0000253-1575043694:156725..157496 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000253 | supercontig | sc0000253:155598..157496 + |
Blast
The following BLAST results are available for this feature:
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