TCONS_00016813 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016813
Unique NameTCONS_00016813
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length368

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016813 ID=TCONS_00016813|Name=TCONS_00016813|organism=Clytia hemisphaerica|type=transcript|length=368bp
CTGCAACAAAACGCTACGTGAAGAAACTTGAGCACAATTTTGAGAAACAG
GAGTAGGAACAGAGTTGCAACTACAACTACAAGGAGCTTTGGATTCAGAC
TGAGACTCACTATTTGCATCGGTCAAGATCGAGATCTGATTGTTAGAAAT
GTTATCAGCTTCAGATCTTTGTCTACCTTCATCGCAAATAGAAATGTGAT
GCCTCTTGTTACACCTATTACATGAGTACTTATCTCTACAAGCATTGGAA
CGATGTCCACGAGCCAAACAAACNNNNNNNCTTTTCTCTAATTAGAATAT
CCCGACGTGACTGTGTATTTGTGACCTTTCGACATTTAGCAGAGCtgtga
ctctttttacaaaagaCA
Run BLAST on NCBI

transcript from alignment at sc0000252:10621..10988

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016813 ID=TCONS_00016813|Name=TCONS_00016813|organism=Clytia hemisphaerica|type=transcript|length=368bp|location=Sequence derived from alignment at sc0000252:10621..10988 (Clytia hemisphaerica)
TGtcttttgtaaaaagagtcacaGCTCTGCTAAATGTCGAAAGGTCACAA
ATACACAGTCACGTCGGGATATTCTAATTAGAGAAAAGNNNNNNNGTTTG
TTTGGCTCGTGGACATCGTTCCAATGCTTGTAGAGATAAGTACTCATGTA
ATAGGTGTAACAAGAGGCATCACATTTCTATTTGCGATGAAGGTAGACAA
AGATCTGAAGCTGATAACATTTCTAACAATCAGATCTCGATCTTGACCGA
TGCAAATAGTGAGTCTCAGTCTGAATCCAAAGCTCCTTGTAGTTGTAGTT
GCAACTCTGTTCCTACTCCTGTTTCTCAAAATTGTGCTCAAGTTTCTTCA
CGTAGCGTTTTGTTGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009411XLOC_009411Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016813-exon-sc0000252-1491911889:10621..10988TCONS_00016813-exon-sc0000252-1491911889:10621..10988Clytia hemisphaericaexon
TCONS_00016813-exon-sc0000252-1510915933:10621..10988TCONS_00016813-exon-sc0000252-1510915933:10621..10988Clytia hemisphaericaexon
TCONS_00016813-exon-sc0000252-1575043694:10621..10988TCONS_00016813-exon-sc0000252-1575043694:10621..10988Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000252supercontigsc0000252:10621..10988 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.217587	0.505279	0	68.0043	61.3468	4.87678	4.83415	1.50422	3.72644	1.13031	2.97207	1.03878	2.15757	1.77381	1.7676	0.335006	0.686741	1.18596	3.47487	0.43147	0.315684	1.02335	0.697779	0	1.92426	0	0	0.99063	0.252324
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016813 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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