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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016794 ID=TCONS_00016794|Name=TCONS_00016794|organism=Clytia hemisphaerica|type=transcript|length=2233bpRun BLAST on NCBI protein sequence of TCONS_00016794-protein >TCONS_00016794-protein ID=TCONS_00016794-protein|Name=TCONS_00016794-protein|organism=Clytia hemisphaerica|type=polypeptide|length=310bp MSDVEVEYTNGYHNDEDMNGRDDIPSPTQDDLSDDEKPRSESTRSQQSVKRun BLAST on NCBI transcript from alignment at sc0000252:270856..293457+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016794 ID=TCONS_00016794|Name=TCONS_00016794|organism=Clytia hemisphaerica|type=transcript|length=22602bp|location=Sequence derived from alignment at sc0000252:270856..293457+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000252:270856..293457+ >TCONS_00016794 ID=TCONS_00016794|Name=TCONS_00016794|organism=Clytia hemisphaerica|type=CDS|length=8397bp|location=Sequence derived from alignment at sc0000252:270856..293457+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00016794 vs. Swiss-Prot (Human)
Match: LIMD2 (LIM domain-containing protein 2 OS=Homo sapiens GN=LIMD2 PE=1 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 3.446e-30 Identity = 50/80 (62.50%), Postives = 60/80 (75.00%), Query Frame = 3
Query: 1011 CFVCNKTVYPMEKLEADKHMYHKFCFKCKTCNRTVGLGNYAALQGEIYCKPHLKQLFKLKGNYDEGFGREQRKADWMNKD 1250
C C KTVYPME+L ADK ++H CF CK C+ + LG+YAAL GE YCKPH +QLFK KGNYDEGFGR+Q K W +K+
Sbjct: 40 CAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHKE 119 The following BLAST results are available for this feature:
BLAST of TCONS_00016794 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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