TCONS_00016794-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00016794-protein
Unique NameTCONS_00016794-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length310

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00016794-protein ID=TCONS_00016794-protein|Name=TCONS_00016794-protein|organism=Clytia hemisphaerica|type=polypeptide|length=310bp
MSDVEVEYTNGYHNDEDMNGRDDIPSPTQDDLSDDEKPRSESTRSQQSVK
VTESRQRTLSRDENKAPRRGSRTSSTTSDQSDDYHQSATERRNRYEKKVG
RGFSVDKPRIQAHGGSTGASTLKERFENKAIESKNRVMTSSNRLQGLSNQ
NGEGEERHSALSLKARFEAKAQDSAPVKRNFVINRSGGGAAKKFGGGGAT
SNKCFVCNKTVYPMEKLEADKHMYHKFCFKCKTCNRTVGLGNYAALQGEI
YCKPHLKQLFKLKGNYDEGFGREQRKADWMNKDDKNVETMNNEVNGTAGD
ADEEAPLNDD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009403XLOC_009403Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00016794TCONS_00016794Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001781Znf_LIM
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001781Zinc finger, LIM-typeSMARTSM00132lim_4coord: 203..255
e-value: 1.4E-11
score: 54.4
IPR001781Zinc finger, LIM-typePFAMPF00412LIMcoord: 204..257
e-value: 1.0E-8
score: 35.2
IPR001781Zinc finger, LIM-typePROSITEPS00478LIM_DOMAIN_1coord: 204..238
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 202..262
score: 12.801
NoneNo IPR availableGENE3D2.10.110.10coord: 199..309
e-value: 7.7E-21
score: 73.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..117
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 277..310
NoneNo IPR availableCDDcd09358LIM_Mical_likecoord: 204..255
e-value: 6.85023E-29
score: 105.043
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 200..229
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 230..270

Blast
[Close]
BLAST of TCONS_00016794-protein vs. Swiss-Prot (Human)
Match: LIMD2 (LIM domain-containing protein 2 OS=Homo sapiens GN=LIMD2 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.342e-33
Identity = 55/102 (53.92%), Postives = 67/102 (65.69%), Query Frame = 0 
Query:  187 GGGAA-----KKFGGGGATSNKCFVCNKTVYPMEKLEADKHMYHKFCFKCKTCNRTVGLGNYAALQGEIYCKPHLKQLFKLKGNYDEGFGREQRKADWMNKD 283
            GGG++     K F         C  C KTVYPME+L ADK ++H  CF CK C+  + LG+YAAL GE YCKPH +QLFK KGNYDEGFGR+Q K  W +K+
Sbjct:   18 GGGSSTVQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHKE 119
The following BLAST results are available for this feature:
BLAST of TCONS_00016794-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LIMD22.342e-3353.92LIM domain-containing protein 2 OS=Homo sapiens GN... [more]
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