TCONS_00016749 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00016749
Unique Name	TCONS_00016749
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	265

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000248:289788..295271-

transcript sequence

>TCONS_00016749 ID=TCONS_00016749|Name=TCONS_00016749|organism=Clytia hemisphaerica|type=transcript|length=265bp
GACTAGTTTCCAGTTTGTTATTGCTCCACAACAAGGTCTAAAAACACGCg
gcaaaatttaccaaaaataaatttttcggaTAATTAGAAGAAGAGGAAGA
AAAGAAGCTCCCAATCCAAGAAGCAGTCTCCTCCAGAAATTATACCTTGG
ACTTTTctGGAAACTCGTACCTTCTTGAGTGCAATTTCCTTCCATCAGTT
TGAAGTCATCGATTGCAATATCACTGTTTTCGTTCATTCGAGTTGCAACA
AAAGCAATCTAAAGG

Run BLAST on NCBI

transcript from alignment at sc0000248:289788..295271-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00016749 ID=TCONS_00016749|Name=TCONS_00016749|organism=Clytia hemisphaerica|type=transcript|length=5484bp|location=Sequence derived from alignment at sc0000248:289788..295271- (Clytia hemisphaerica)
GACTAGTTTCCAGTTTGTTATTGCTCCACAACAAGGTCTAAAAACACGCG
GCAAAATTTACCAAAAATAAATTTTTCGGATAATTAGAAGAAGAGGAAGA
AAAGAAGCTCCCAATCCAAGAAGCAGTCTCCTCCAGAAATTATACCTTGG
ACTTTTGTAAGTATCATTTTATCTTGGAAATAAACATCAAAGGGTGTTCT
TTTGACTATTAGTCTAAAAAATTGAGTAAAATTCAGGAAAATGAAAATCC
AAATTTCTGTGGGTGTTGTGGTGAAAATTATTATTATTTCTAAAAGTTCA
AAAAATTTAACCTGAGATTGTTTTTGTGATTGTTATTGTTTTCTGCCCAC
CAGCTTGAAGCTCTTAAGGGATTGGTGAAAACATAACACCCGGGGGGGGG
GTACTAGGGCAAGATTGGTTACACGGAGATCCTCCGCTGGACAGGGGTAC
CTTTTTTAACCTCCACGAGTCGAGTCCCAGGTAGGGTCGCAAAAACACCA
AAATAGAAAAATCAGTCCCTCGTAGGGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCC
ACGAGTCCCAGGTAGGGTCGCAAAAACACCAAAATAGAAAAATCAGTCCC
TCGTAGGGTGCCTATTTTTGGAAAATTTGGGGAAAAATTAGAAAATTAGA
GAAAATTTTGGAATTTCAGTCCCATTCAGGGTCACTTGTTTTGCAAATTT
CGAGTCCCATGTAGGGTCCATTTTTCTAACCTCAGCGGAGCACCCCCTTC
GGTCGACAAGGGTAGTACCCCCCCAGGACATAACAATCTGACGAAATGCT
ATCTCAAAATCCAAAATTCAACTACAAGTGTCACCAATTTCTTCTGCTTC
TTCCCCGTCATTTTACCAACCCTGTCGATGCACCGTATAATAAATGTAAC
ACTTTTTGGCAACAGACTGGTGTATTGGCAGGGTCGTCATTTTCTCAATG
AGGGCAAGTGTGGGAAAGTTGAAAATGGAAGGAACATTTAGCTTATGGAA
GTAGCCATCCATATCAGAAACTTTAAAAGCCCATATATCTGTATATTGCT
ATTAAATAAATCAATCCTTCCATACATCTTGAGTAATAGCTTTAATAACA
GACGCTACTTCTGGGTCATTTTGAAATTTATTTTTATTTTAAACTTTTTG
GCCTCAATGGTGGCACATATAATCTTGGGAATATGCTCTAATAGTTATTA
AGCCAAAAAACATATGTGGCTGTGTTGAAAAAGCATTATTGGTCTCATCT
GATGCCACTGTAAGTAAGGTCAGTGCGAGAGCTTTAACAATCAAAAGAGA
GAAGCATTGCATAAGAAACTTAGCATTGTGAAATTTCATAGAGTTTACTC
AACATCGAAACAAAGGAGTAGCCCCGGTGGTACTAGGGTTGCGAGCTGAC
GGGGTGCCGCCCGACTTACGACCCTTGGACCCTTACAGGGACTAAAAAGG
AGAAAACAAAGGAAAATTTTGTGAATTTTACGACCCTTATTCATTGGGAC
AAATTTGACCAATTTTGACCAAATTTCAATATTTCTGGATGTAAAAAGTT
TAAATTTTCCTATTTTTCTGACCCTTAGTGGGACTTTGGAAATCCAAAAA
AGGTACCCTTAAGGGTGGCACATACCGTAACCTCCCTCCATTTGCCTAAG
TACACCCAGGGGAGTAGCTAACATCATTTTAATTTGTTTTTTGTTGTTTA
ACATATGTCTGAAAGATGATGATCAAAAAAATTTAAAGCAGAACATTTCA
GGCTTTATTCTTCTTTTTTAAAGACTCCCAAAGAACATGAATCTGACCAT
TGAAATCTTCTGAGATAAAGGGAGAATAATCAGAATTTTTGATATTCATA
TTTTGAATGTGATATTCGTACATTTAAAGCCAGATCTAATGGTTTACATT
CATTTCATCAATTCAATTCAATCAATTATCATATCAATCCCTACTATTTC
ATTGTAACACTTTGATGTTGTATATATGCTTTTAAATATTATTATTTCAG
CTCACTCTTTGTAACTCTTTCTTTCACATTTTGTTTCTATATTATGCTGA
ACACCCTAAATCTTAATTGACAGTAGTACACTTCCAACCCTTCTTGTCAA
ACGTAATAAGGTATATAAATTCTAATTGACATGATCTTATTGACATGGGT
TTTAGGAATCGTAGTTTAGATAAGAATAGCAACAGGTCAACCTTTAGATA
TTGCAAATTTTTCTATATCAACAGCATTAGCAGCTTTTTTGTTATAAGTG
TTGTTTTTTTGTGTTTTGTTCATCTTTTTTAGCAAATTTTAATTTATTGA
AAGGGAAATTTAGAGTACACGTCTTTTTTTTTTAANNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNATGTCAAAAAGTTTAGAAACATGTAAGAAACATTTAAGGCTCAAAA
GGCCGATTTCTTAAGAAACATTGAGGCTGCTTGGTAAAACTAGTTTCTTT
AAAAAAAAAAGACGTGTACCATCATTATTTGGAAAAGATTTGCTAACTTT
TAATATATGTATTTTATTTATTGCAAGTTAAAAGGTTTATTATTAAAAAG
AATCGGGAGAGTACGCATCTCTACGTCTCAACGATTTTACAAACAATATT
TATAAAAATAAGTAAAGGTTTTTAAAAGGAGAATAATGTCAGTTGTAATT
CAATGTTTTAAAATAGGAAAAAATAGCATAGTTGACAAAGTAGACTTATT
ATGTATAAAAAAGTGTACAGTATTTCAATTCAAAATCTTAACACTTTTTG
CATGGGTGTGTATTACATGGCTCATCTTCAGTATCACTCAATTTTCGTAC
ATTATCACTGAGATCCAAACATNGGCTCATCTTCAGTATCACTCAATTTT
CGTGCATTATCACTGAGATCCAAACAATGATCACCACCATTGACTGGTGC
AGGATTTGCACATTCACGGACACGAATACGTGTTCCGTTACCACACTTTT
TGTCGCACTCTCCCCAATCGAACCAGTTTGTCCAAGCGCCATGAACTAAA
AGAAAAAGTTGATTTGTGTTGGGAATTTTCATAACATGATCATCAATATT
GTTCAGAAATAGTTTTTAATGAAAATGGCCCGGGGGGGGGCACTGGGTTT
GCGGACTGACGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNCCCCCCCCCCCCCGGGGAAAATGGGCAGGTAATTT
TTATGTTCATAATGTATGCTATGGTAAACAAAAATTTTGAATAAACAAAA
TCTAGTTGGTTGAAAATTGTACATTTTGTCATACTATTCAAACAGGGAGC
TCGTTTACTTAATTTCTTCTTTCATGCTAATCACATGGAATCAAAAAAAT
CTGCAGGANAGGGAGCTCGTTTACTTAATTTCTTCTTTCATGCTATCATC
ATGGAATCAAAAAAAATTTGCAGGGGAGCCTCCATAACTCAGCACGCATG
GAGAACACAAAATTATTCAAATTAAGGACATTTCGAGTTATTGAGTAAGG
TTCATAAAAGGCATTCTACCGAAGGAATAGAAAGCTTGTTCAAGTAAAGG
AAACATTCGAGTTATAGAGGTTCGAGTTAAGGAGACTGTATCTCGAAACC
AGTGCAGTGTATTCATGATATGCACGCCACTGGAGGGTCTTCTGAGAACT
TTTGAAATTTTCCACTTACGTCACTTAAACAATAGAAAAAGTGACGCATT
GGGTGGAATAAAAACAGAAAACCTGCATAATTTCGTGAAGTCATTGCAGT
GGTGCATATATCAGGAATTGACTAACCTTTACAAGCAGGCAGATGACAGT
CTTCATTTTGATACCAATCAGTCAGTTGATTTGGACATTGTTTACCATTG
GCGGAGGGTGCTGGCTCTGTACAGAATCTCATTCTTGTTCGAACTGATTC
ACCACATTCTTTATCACACTGGCCCCATTGGCCCCATGATGCCCATTGTC
CATCCACTGAAATACAATGTAAAAGAATGCAATTGACTAATTTAAGTTAT
TAACGCGAATCGGTTATCCTCACGTTAATTACAATCTTTTAACAAACTAT
GAGCTAAAGTTATTTTCGAAAATCCTGCCTTTTGCGTTAATTAAATTGTA
GCACTCATTACCACCTTATACTAACATTATTCCTCCTCTAGCTGAGTTAA
TCATGGAGGTCCCTGCGTTGCACTTCGAAATATGTATCCCCACTACAATC
ATGTTCGTAATATTATAGAAAAAAGGGAAATCCCCACGAATCTTTAAAAC
CACAAACGATTTGGAAGTGCTCTAAGTTAGGGTAGAGTTTTAATGCTAGA
TATATAAGACTTTGTAGTATATATCTGAGGATCCAAAAGCTCAAAAATGG
TCCAATAAGGCTCAGAAAAAATCGACTTTCTCGCACGAACTCCTAATTTC
GAAAAACGAGGAAAAAGGTAAATTCTCAATAGATTTTGACCATGATTGTA
GTAATACTGTTACCATTTAGTGAGCATAAAATTTACTTTTGTTTATTCAA
ATACCATATGTATTGCTTCGTATAAACGCCTCCTCTATAATAAACGCCCT
ACTTTGAGAAAAAAAGGCCCAGGGTATTTAATGGGGACAATTACGGTACT
TATTTATTTTCAATATTTTTTTCAGCTGGAAACTCGTACCTTCTTGAGTG
CAATTTCCTTCCATCAGTTTGAAGTCATCGATTGCAATATCACTGTTTTC
GTTCATTCGAGTTGCAACAAAAGCAATCTAAAGG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_009365	XLOC_009365	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00016749-exon-sc0000248-1575043694:295116..295271	TCONS_00016749-exon-sc0000248-1575043694:295116..295271	Clytia hemisphaerica	exon
TCONS_00016749-exon-sc0000248-1575043694:289788..289896	TCONS_00016749-exon-sc0000248-1575043694:289788..289896	Clytia hemisphaerica	exon
TCONS_00016749-exon-sc0000248-1510915933:295116..295271	TCONS_00016749-exon-sc0000248-1510915933:295116..295271	Clytia hemisphaerica	exon
TCONS_00016749-exon-sc0000248-1510915933:289788..289896	TCONS_00016749-exon-sc0000248-1510915933:289788..289896	Clytia hemisphaerica	exon
TCONS_00016749-exon-sc0000248-1491911889:295116..295271	TCONS_00016749-exon-sc0000248-1491911889:295116..295271	Clytia hemisphaerica	exon
TCONS_00016749-exon-sc0000248-1491911889:289788..289896	TCONS_00016749-exon-sc0000248-1491911889:289788..289896	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000248	supercontig	sc0000248:289788..295271 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.36852	4.72619	0	0	0	0	0.783264	0	0.341305	0.635914	0	0	0	7.53343	0.858622	0.212873	1.69669	0.264255	0	0	0	0	1.26883	1.84715	0.403281	3.31495	0	0	1.34358	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00016749 vs. Swiss-Prot (Human)

BLAST of TCONS_00016749 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00016749 (transcript) - C. hemisphaerica