TCONS_00016743 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016743
Unique NameTCONS_00016743
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1244

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016743 ID=TCONS_00016743|Name=TCONS_00016743|organism=Clytia hemisphaerica|type=transcript|length=1244bp
CTTTAAATGTGCCACACAAGCGGAGAAATAATCTaccaagtttctcaatt
aaTTCCGAATGCTGATCCTGACTATATTGGTCACGTTCTTGATGTTTCCG
TAAGCCAGGTAGGTTGCTGACATATTTTCCAACATCTTTTAATACAATAG
TATCGCCTTCATTCAGCTTCAACTGACGAACTTCACCAAGATAAGACGTC
AAAACGATCGACATCGAGTGGTCATCCAGGCGCTGAAGAGCTGCCGCATC
AAAGCTATCAGGAGCGATTTCATAGGAGTACATTAGATTTCCTTTCAAAT
CAAACTCGTAGACATTTGGTAAAATATCAAATCTTGGCTTACCATCGCAA
ACATAAATACGGTCCCTTGTTAGTTCGATTTCCGGAATTCCATGATCCTC
CATTTTGGTCATCGACAGATCAAGCTTCACTCTTTCCGAATGCCATATCT
TCCCTTTCTCTGTGTGCACTATATCAATACAAATTTCAGTATCAAATATA
GGTTTGTAGTTTTCGTCCTCGTCACGATTATACGCAATGACGAGTAAAAC
CGTCTCATCACCAAATCGATAATTATATTTCAGTTTGACATCAGTATATT
CTTCACCATCATGTTTCAAAGTCAGATCTGGTTCTTGACGATCTTCGACT
AAAACTTTGGTACCTTTAACATTTAAGTGTTCCATTATGTGGAAGTAATA
AAGGTCGATTTGCAATTCGTCAGGAGTTTCATCATCATCTTCCTCATCCT
CTTTGGAGTTGTCAGAGTCAATAGTCAGAGGGATCTCCTCTTTCTCTTTA
GATATACAAGTTATTGTAGCATGAACCAAATTTCCGTTAACTGTATCAAG
CTCAATCATCCGTCTAGAATCATCCATTAAAGAACGAGAGAACATTTTCA
ACACATTTTTCTCCAACGCCATTAGAGCCTTGTTATAAGAAATGACATAG
ATCTTGATCTCATTTTCAAGCAAATCCTCACAACACTCACATTTAGCCTT
CTTAGCAAAATGACGATCTTGGTAGAACAGATAACGAGTGCCGCTGGCGT
CAAATCCTTGAGGCATGATTGTTTGCATGTATCCAGGCACATCACCTAAG
GTGTAGGTGTGATCTAGTTCAATTGGTTTAACATCGTCAACTCCGCTTGG
TAAAAACGTTAAACGCTCGTCACTGGACATTATTGATCATAGAGTAACTT
cctttatttttaatttctttgaatttttattggttaatctaaaa
Run BLAST on NCBI

transcript from alignment at sc0000248:119023..120676-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016743 ID=TCONS_00016743|Name=TCONS_00016743|organism=Clytia hemisphaerica|type=transcript|length=1654bp|location=Sequence derived from alignment at sc0000248:119023..120676- (Clytia hemisphaerica)
CTTTAAATGTGCCACACAAGCGGAGAAATAATCTACCAAGTTTCTCAATT
AATTCCGAATGCTGATCCTGACTATATTGGTCACGTTCTTGATGTTTCCG
TAAGCCAGGTAGGNTCTGTTTGTTTTTGTATATTTTTAAAGTCTACCGCA
GTAATCTTGATCTGGGCTGTCTCTTTTGATCGAACAATTATTCTTTGAAA
TTATTTTCACAGTGATAATCTCCTAAGATAATGATAACTATTTCACCACT
ATGTATTTCTTAAAAGTGCCAAATAACCAAAAACAAAAAGCTTTTATCTT
CACTTACAAACATTGAAAATGGATTTTCCTCCTTAAATGCCAATCTTAGC
TTCAAAATTCTTACAAAAAATAGCGAAATACCAGGTAATAAGGATACAAA
TAAAGCATACCTTTAAATGTGCCACTCAAGCGGAGAAATAATCTACCAAG
CTTCTCGATTAATTCCGAATGCTGATCATGACTATATTGGTCACGTTCTT
GATGTTTCCGTAAGCCAGGTAGGTTGCTGACATATTTTCCAACATCTTTT
AATACAATAGTATCGCCTTCATTCAGCTTCAACTGACGAACTTCACCAAG
ATAAGACGTCAAAACGATCGACATCGAGTGGTCATCCAGGCGCTGAAGAG
CTGCCGCATCAAAGCTATCAGGAGCGATTTCATAGGAGTACATTAGATTT
CCTTTCAAATCAAACTCGTAGACATTTGGTAAAATATCAAATCTTGGCTT
ACCATCGCAAACATAAATACGGTCCCTTGTTAGTTCGATTTCCGGAATTC
CATGATCCTCCATTTTGGTCATCGACAGATCAAGCTTCACTCTTTCCGAA
TGCCATATCTTCCCTTTCTCTGTGTGCACTATATCAATACAAATTTCAGT
ATCAAATATAGGTTTGTAGTTTTCGTCCTCGTCACGATTATACGCAATGA
CGAGTAAAACCGTCTCATCACCAAATCGATAATTATATTTCAGTTTGACA
TCAGTATATTCTTCACCATCATGTTTCAAAGTCAGATCTGGTTCTTGACG
ATCTTCGACTAAAACTTTGGTACCTTTAACATTTAAGTGTTCCATTATGT
GGAAGTAATAAAGGTCGATTTGCAATTCGTCAGGAGTTTCATCATCATCT
TCCTCATCCTCTTTGGAGTTGTCAGAGTCAATAGTCAGAGGGATCTCCTC
TTTCTCTTTAGATATACAAGTTATTGTAGCATGAACCAAATTTCCGTTAA
CTGTATCAAGCTCAATCATCCGTCTAGAATCATCCATTAAAGAACGAGAG
AACATTTTCAACACATTTTTCTCCAACGCCATTAGAGCCTTGTTATAAGA
AATGACATAGATCTTGATCTCATTTTCAAGCAAATCCTCACAACACTCAC
ATTTAGCCTTCTTAGCAAAATGACGATCTTGGTAGAACAGATAACGAGTG
CCGCTGGCGTCAAATCCTTGAGGCATGATTGTTTGCATGTATCCAGGCAC
ATCACCTAAGGTGTAGGTGTGATCTAGTTCAATTGGTTTAACATCGTCAA
CTCCGCTTGGTAAAAACGTTAAACGCTCGTCACTGGACATTATTGATCAT
AGAGTAACTTCCTTTATTTTTAATTTCTTTGAATTTTTATTGGTTAATCT
AAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009361XLOC_009361Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016743-exon-sc0000248-1575043694:120565..120676TCONS_00016743-exon-sc0000248-1575043694:120565..120676Clytia hemisphaericaexon
TCONS_00016743-exon-sc0000248-1575043694:119023..120154TCONS_00016743-exon-sc0000248-1575043694:119023..120154Clytia hemisphaericaexon
TCONS_00016743-exon-sc0000248-1510915933:120565..120676TCONS_00016743-exon-sc0000248-1510915933:120565..120676Clytia hemisphaericaexon
TCONS_00016743-exon-sc0000248-1510915933:119023..120154TCONS_00016743-exon-sc0000248-1510915933:119023..120154Clytia hemisphaericaexon
TCONS_00016743-exon-sc0000248-1491911889:120565..120676TCONS_00016743-exon-sc0000248-1491911889:120565..120676Clytia hemisphaericaexon
TCONS_00016743-exon-sc0000248-1491911889:119023..120154TCONS_00016743-exon-sc0000248-1491911889:119023..120154Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000248supercontigsc0000248:119023..120676 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.2434	4.45387	9.94846	11.3677	1.08744	0	0.405608	1.76842	2.75622	0.913745	0	0.73389	0.657509	0	1.3363	0	0	1.34982	3.73947	2.00174	2.37475	1.62905	4.86494	3.7742	0	0	0.706747	1.14031	3.52148	3.98516
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016743 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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