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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016733 ID=TCONS_00016733|Name=TCONS_00016733|organism=Clytia hemisphaerica|type=transcript|length=2639bpRun BLAST on NCBI protein sequence of TCONS_00016733-protein >TCONS_00016733-protein ID=TCONS_00016733-protein|Name=TCONS_00016733-protein|organism=Clytia hemisphaerica|type=polypeptide|length=648bp MRWEAMGMMMPPPFPFFHPGMPLPPGMQMPPNMPAGGMPPFMPNGDMSTMRun BLAST on NCBI transcript from alignment at sc0000248:307777..318672+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016733 ID=TCONS_00016733|Name=TCONS_00016733|organism=Clytia hemisphaerica|type=transcript|length=10896bp|location=Sequence derived from alignment at sc0000248:307777..318672+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000248:307777..318672+ >TCONS_00016733 ID=TCONS_00016733|Name=TCONS_00016733|organism=Clytia hemisphaerica|type=CDS|length=27258bp|location=Sequence derived from alignment at sc0000248:307777..318672+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00016733 vs. Swiss-Prot (Human)
Match: IF4G2 (Eukaryotic translation initiation factor 4 gamma 2 OS=Homo sapiens GN=EIF4G2 PE=1 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 3.729e-44 Identity = 109/365 (29.86%), Postives = 207/365 (56.71%), Query Frame = 1
Query: 949 KKTGLSKSDVDKKIVEVNESHKKDEDTTKACNDLQSLATNLKYSKMVAKQLLIFTSSQNEEEWARLVQLITQCVEKSIFSEDTLVNAYNLLLD-------DIKVIESGNGKNFMALIASTTVEKDWIKLSTVMESFEDGAHYPAPMNCLSNLHKSKGKDWLMSMLKKQKIDCKKIFPKDEWSDNAIMQVAQNMEMTFLFPQLCXXXXXXXXXXXGANEDELIQWIKDNEN-ELN-KKQLVHLVVTCSVT-IATQITF-ENGGDLQQKPDKETQELEKEILGRLNGFLRQMIGPEMCDQLEAVYALQVFCHDKDFPKEMLLRMFLCFYNMEIIDEDVFLKWKEDINDSYPGKGKSLFQVNNWLQWL 2010
KK SK ++ K V + + +A N ++ + + + +++I + +++E+ + LI+ ++ I + D + A+ +LD DI ++ K+++A A+ + + + +S + + E G H+P + CL L K + ++WL + ++ K++ +K+ P+ + + + ++++ + ++FLFP L L++ELLK +K + + +WIKDN + +L+ K V++++T + I++++ + D P KE E EK++L +++ + + Q+ A+YALQV C++ +FPK MLLR F+ FY+MEII+E+ FL WKEDI +PGKGK+LFQVN WL WL
Sbjct: 535 KKPPPSKEELLKLTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNVLDQCPKLEVDIPLV-----KSYLAQFAARAIISELVSISELAQPLESGTHFPLFLLCLQQLAKLQDREWLTELFQQSKVNMQKMLPEIDQNKDRMLEILEGKGLSFLFPLLKLEKELLKQIKLDPSPQTIYKWIKDNISPKLHVDKGFVNILMTSFLQYISSEVNPPSDETDSSSAPSKEQLEQEKQLLLSFKPVMQKFLHDHVDLQVSALYALQVHCYNSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQWLTWL 894 The following BLAST results are available for this feature:
BLAST of TCONS_00016733 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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