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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016728 ID=TCONS_00016728|Name=TCONS_00016728|organism=Clytia hemisphaerica|type=transcript|length=2552bpRun BLAST on NCBI protein sequence of TCONS_00016728-protein >TCONS_00016728-protein ID=TCONS_00016728-protein|Name=TCONS_00016728-protein|organism=Clytia hemisphaerica|type=polypeptide|length=701bp RLQEDASDFTHFQLKPTSDAQVGFASPVLDVSSLSALEVTFDYVLFGRDVRun BLAST on NCBI transcript from alignment at sc0000248:278752..292813+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016728 ID=TCONS_00016728|Name=TCONS_00016728|organism=Clytia hemisphaerica|type=transcript|length=14062bp|location=Sequence derived from alignment at sc0000248:278752..292813+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000248:278752..292813+ >TCONS_00016728 ID=TCONS_00016728|Name=TCONS_00016728|organism=Clytia hemisphaerica|type=CDS|length=23166bp|location=Sequence derived from alignment at sc0000248:278752..292813+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00016728 vs. Swiss-Prot (Human)
Match: SEM5A (Semaphorin-5A OS=Homo sapiens GN=SEMA5A PE=1 SV=3) HSP 1 Score: 95.5153 bits (236), Expect = 6.457e-20 Identity = 43/116 (37.07%), Postives = 58/116 (50.00%), Query Frame = 1
Query: 1699 DFKLMEGNCTQEVDGQWASWGQWGQCDKECGESVRTRMRFCTEPAPSANGKQCPNQLTDWYQNEDCHLPACKVHGAWTNWFDWGECDKKCGNGTRIRVRECANPAPVNGGDHCLDL 2046
DF V+G W++W W QC ++C +R R R C P P G C L + ++C++ C V G W+ W W +C CG G +R R C+NPAP GGD CL L
Sbjct: 771 DFLRAGRYSAHTVNGAWSAWTSWSQCSRDCSRGIRNRKRVCNNPEPKYGGMPC---LGPSLEYQECNILPCPVDGVWSCWSPWTKCSATCGGGHYMRTRSCSNPAPAYGGDICLGL 883 The following BLAST results are available for this feature:
BLAST of TCONS_00016728 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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