TCONS_00016728-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00016728-protein
Unique NameTCONS_00016728-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length701

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00016728-protein ID=TCONS_00016728-protein|Name=TCONS_00016728-protein|organism=Clytia hemisphaerica|type=polypeptide|length=701bp
RLQEDASDFTHFQLKPTSDAQVGFASPVLDVSSLSALEVTFDYVLFGRDV
GSIYVVMDGKLATDSTDTFNQIKPINANALKNTPTRQEVFFKGGNTNINT
WNYDFKNIFDVTNLVEAQITIQFLRLNVTTRSIRDDLSIITIDTFQVAAS
TVLPSTTAPPTTVAPTTAVPTTAAPTTAAPTTAAPTTAAPTTAAPTTAAP
TTAAPTTAAPTTAAPTTAAPTTAAPTTTAPTTAAPTTAAPTTAAPTTAAP
TTAAPTTAAPTTAAPTTAAPTTAPPTTAPPTTAAPTTTDASGWESWSEWS
VCNVECGPGNQTRNRTCQSGQTCTGLSEETQPCVGASVLCNGQWGPWGTF
SACSGTCGNRTRVSKRVCPNSGVPPCDGSDTKIEACVEGECFKESCDGYD
GQYSCTFDESYNQNQDGFCQSNNFDGWASYGFMVHSGNTPSADTGPSNDH
TFKKSCGSYIYYESSQQSYGVLASGTFMSTSGQMCLSFALSMYSKIKTDM
GVLNIALLKEDLSFVKTLWTQDGAVSDTPEDWRMLSVPVDGLTQNMKYRI
AFVATRMNENSDIAIDDFKLMEGNCTQEVDGQWASWGQWGQCDKECGESV
RTRMRFCTEPAPSANGKQCPNQLTDWYQNEDCHLPACKVHGAWTNWFDWG
ECDKKCGNGTRIRVRECANPAPVNGGDHCLDLSDNARKLSDTEDEXMFGS
Q
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009353XLOC_009353Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00016728TCONS_00016728Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000998MAM_dom
IPR000884TSP1_rpt
IPR013320ConA-like_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000998MAM domainSMARTSM00137MAM_2coord: 400..577
e-value: 9.8E-9
score: 45.0
IPR000998MAM domainPFAMPF00629MAMcoord: 405..576
e-value: 1.0E-19
score: 70.9
IPR000998MAM domainPROSITEPS50060MAM_2coord: 403..577
score: 20.192
IPR000998MAM domainCDDcd06263MAMcoord: 405..575
e-value: 1.30541E-21
score: 91.2853
IPR000884Thrombospondin type-1 (TSP1) repeatSMARTSM00209TSP1_2coord: 643..693
e-value: 1.7E-5
score: 34.3
coord: 583..638
e-value: 3.1E-7
score: 40.1
coord: 344..392
e-value: 8.6E-5
score: 31.9
coord: 293..341
e-value: 7.8E-8
score: 42.0
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 639..693
e-value: 1.4E-11
score: 44.0
coord: 579..637
e-value: 1.2E-12
score: 47.5
coord: 289..337
e-value: 3.8E-9
score: 36.2
IPR000884Thrombospondin type-1 (TSP1) repeatPFAMPF00090TSP_1coord: 296..334
e-value: 3.6E-8
score: 33.4
coord: 645..680
e-value: 1.4E-6
score: 28.3
coord: 585..637
e-value: 3.0E-5
score: 24.0
coord: 345..391
e-value: 6.8E-7
score: 29.3
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 580..638
score: 11.434
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 640..680
score: 9.469
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 290..341
score: 11.689
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 342..392
score: 9.57
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 637..681
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 292..333
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 340..391
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 579..637
NoneNo IPR availableGENE3D2.60.120.200coord: 401..577
e-value: 3.9E-24
score: 85.0
NoneNo IPR availableGENE3D2.30.90.10coord: 342..386
e-value: 1.4E-6
score: 28.2
IPR013320Concanavalin A-like lectin/glucanase domainSUPERFAMILY49899Concanavalin A-like lectins/glucanasescoord: 403..576

Blast
[Close]
BLAST of TCONS_00016728-protein vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 4.861e-20
Identity = 42/109 (38.53%), Postives = 56/109 (51.38%), Query Frame = 0 
Query:  574 NCTQE---VDGQWASWGQWGQCDKECGESVRTRMRFCTEPAPSANGKQCPNQLTDWYQNEDCHLPACKVHGAWTNWFDWGECDKKCGNGTRIRVRECANPAPVNGGDHC 679
            NC  +   VDG W+ W  W +C + CG   +TR R C  P+    G+ C     +      C++  C VHGAW+ W  WG C + CG GT+ R R C NP P  GG +C
Sbjct: 4577 NCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIM---CNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYC 4682

HSP 2 Score: 90.8929 bits (224), Expect = 1.555e-18
Identity = 39/101 (38.61%), Postives = 50/101 (49.50%), Query Frame = 0 
Query:  579 VDGQWASWGQWGQCDKECGESVRTRMRFCTEPAPSANGKQCPNQLTDWYQNEDCHLPACKVHGAWTNWFDWGECDKKCGNGTRIRVRECANPAPVNGGDHC 679
            V G W++W  WG C + CG+  +TR R C  P P+  G  C    T   Q + C+   C +HG W  W  W  C   CG G R R R C++P P  GG  C
Sbjct: 4642 VHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAET---QMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKC 4739

HSP 3 Score: 90.1225 bits (222), Expect = 2.642e-18
Identity = 42/108 (38.89%), Postives = 56/108 (51.85%), Query Frame = 0 
Query:  572 EGNCTQEVDGQWASWGQWGQCDKECGESVRTRMRFCTEPAPSANGKQCPNQLTDWYQNEDCHLPACKVHGAWTNWFDWGECDKKCGNGTRIRVRECANPAPVNGGDHC 679
            E NC   + G+WA+W  W  C   CG   R R R C++P P   G++C  + +D  Q++ C+   C  HG W+ W  WG C + C  G   R R C NP P NGG  C
Sbjct: 4694 ERNCP--IHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKC--EGSD-VQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRAC 4796

HSP 4 Score: 83.5741 bits (205), Expect = 2.220e-16
Identity = 37/102 (36.27%), Postives = 54/102 (52.94%), Query Frame = 0 
Query:  578 EVDGQWASWGQWGQCDKECGESVRTRMRFCTEPAPSANGKQCPNQLTDWYQNEDCHLPACKVHGAWTNWFDWGECDKKCGNGTRIRVRECANPAPVNGGDHC 679
            +V G ++ W  W  C   CG+ ++ R R C +P P+  GK C  Q +D  +  +C    C V G+W+ W  W EC + CG G + R R C NP+  +GG  C
Sbjct: 4527 QVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPC--QGSD-LEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPC 4625
The following BLAST results are available for this feature:
BLAST of TCONS_00016728-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN14.861e-2038.53Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2[more]
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