TCONS_00016626 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016626
Unique NameTCONS_00016626
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length593

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016626 ID=TCONS_00016626|Name=TCONS_00016626|organism=Clytia hemisphaerica|type=transcript|length=593bp
atgataTACTTTCTTGCCTCTTTTAGTTTACCAATTTCTGCTCGCAGAAA
TAtttgcacccctgtctcagagaTGATTTAAGCCAGGGGATGTGAGACCT
CCGAGAGAATGAACAGCGTATGAACGAACGGGAAATTATGTCTTGTTTCA
TACTGTACCCTGTCTCATTATCAAGCCTTTAGAAATATTCCCTTTTGTCA
AAGACATTTCCTAGGAAGGACGAGAGACCGCGGCGTCCGTTACTTTAAta
aatgttcttatcttgttgTAAAGTGTTTGTAGCCTTACCCTTCCCACTAT
TTTCTTCTGGAAAATAATACATAACATATAAACTCCTAAATTATCActat
acaaaatatacaaagacATTGTATGAACAATGAGTGACTATTAACATTAG
ACTCCTTTCCATTTCTCGGTTCCGTATCACTTAACAACGCCTTCAACTTG
GGGCGCAAAAGGGCGATTCGCGTTTTAACGCGAACAATTTTCCGCCCTAA
CTCCAGAATGAAAATACGAAGAATAGACATTGTTTTTCGTTTAGTGAACC
AAAGATTGTATACAACTGGCTTTCGTAGAACACAATGCCAAAG
Run BLAST on NCBI

transcript from alignment at sc0000243:34824..35416

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016626 ID=TCONS_00016626|Name=TCONS_00016626|organism=Clytia hemisphaerica|type=transcript|length=593bp|location=Sequence derived from alignment at sc0000243:34824..35416 (Clytia hemisphaerica)
CTTTGGCATTGTGTTCTACGAAAGCCAGTTGTATACAATCTTTGGTTCAC
TAAACGAAAAACAATGTCTATTCTTCGTATTTTCATTCTGGAGTTAGGGC
GGAAAATTGTTCGCGTTAAAACGCGAATCGCCCTTTTGCGCCCCAAGTTG
AAGGCGTTGTTAAGTGATACGGAACCGAGAAATGGAAAGGAGTCTAATGT
TAATAGTCACTCATTGTTCATACAATgtctttgtatattttgtatagTGA
TAATTTAGGAGTTTATATGTTATGTATTATTTTCCAGAAGAAAATAGTGG
GAAGGGTAAGGCTACAAACACTTTAcaacaagataagaacatttaTTAAA
GTAACGGACGCCGCGGTCTCTCGTCCTTCCTAGGAAATGTCTTTGACAAA
AGGGAATATTTCTAAAGGCTTGATAATGAGACAGGGTACAGTATGAAACA
AGACATAATTTCCCGTTCGTTCATACGCTGTTCATTCTCTCGGAGGTCTC
ACATCCCCTGGCTTAAATCAtctctgagacaggggtgcaaaTATTTCTGC
GAGCAGAAATTGGTAAACTAAAAGAGGCAAGAAAGTAtatcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009296XLOC_009296Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016626-exon-sc0000243-1491911889:34824..35416TCONS_00016626-exon-sc0000243-1491911889:34824..35416Clytia hemisphaericaexon
TCONS_00016626-exon-sc0000243-1510915933:34824..35416TCONS_00016626-exon-sc0000243-1510915933:34824..35416Clytia hemisphaericaexon
TCONS_00016626-exon-sc0000243-1575043694:34824..35416TCONS_00016626-exon-sc0000243-1575043694:34824..35416Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000243supercontigsc0000243:34824..35416 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.53369	1.6574	1.4571	2.33274	4.85956	2.38725	2.33289	2.04202	1.75089	2.14446	2.53173	1.4148	1.46551	1.50128	0.82878	0.730265	1.20654	1.15687	0.370768	1.57888	3.16033	1.48397	0.134328	0.642492	1.93581	2.36773	1.26372	2.28392	0	0.562399
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016626 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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