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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016596 ID=TCONS_00016596|Name=TCONS_00016596|organism=Clytia hemisphaerica|type=transcript|length=5225bpRun BLAST on NCBI protein sequence of Puratrophin protein >TCONS_00016596-protein ID=TCONS_00016596-protein|Name=Puratrophin protein|organism=Clytia hemisphaerica|type=polypeptide|length=1563bp MFKRLKTGVKKDTEDDQKETKKHQLPELDSGKIEGSEASLPLKSDENEEERun BLAST on NCBI transcript from alignment at sc0000243:82569..122108- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016596 ID=TCONS_00016596|Name=TCONS_00016596|organism=Clytia hemisphaerica|type=transcript|length=39540bp|location=Sequence derived from alignment at sc0000243:82569..122108- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000243:82569..122108- >TCONS_00016596 ID=TCONS_00016596|Name=TCONS_00016596|organism=Clytia hemisphaerica|type=CDS|length=89148bp|location=Sequence derived from alignment at sc0000243:82569..122108- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00016596 vs. Swiss-Prot (Human)
Match: PKHG4 (Puratrophin-1 OS=Homo sapiens GN=PLEKHG4 PE=1 SV=1) HSP 1 Score: 444.506 bits (1142), Expect = 1.599e-131 Identity = 292/912 (32.02%), Postives = 459/912 (50.33%), Query Frame = 1
Query: 1015 ILILDLNFELLHNQVAYLPGAHDRRGGPVIFFETNKSCWENTDMDSGELARLLIYYFKIPRESSSSLGCSLVIDARNAKQTRDILQCIGEAILIFQEQIPGAVNMAHVLTKKDSLMLLLKASKIKENLNFEFQFISSLEKLTREISIDELPTDFGGNLSYEHERWIKFRTKVEPFMTGCRSAAKHALHYIKELSRTDMGSTVEECEKLLDEHRLKVNEVLEDPRLQGLRTEGRSILERISFEEFNAYHLTDDYKHTIECLNRLHNQMTKVFDRLQSISDRRLQSLELCLKVRTFEEHSSQVIAWISEEGLPPLRKELIISDSLDSAEKQINEFETFTADAEKHLDNGQQYIELGTQLTTIEDLESDRQLINEKLDELRHLCSEYSAKYAERSKKLTQCVNFHQLLKAAEQWWMSAMQFIANMNLEDIQTQGGIDRLKGSFDEFTQTHPEFEESRVIKMTELAHHLGHNQVTKAEQMN-KKCSDIKNMLEAKKNQILGAEKRIQDNRNSFLYSDNDENSSGFKEDDLSTESGDHERYYDCVDRSRGESVG--SAELDDSVIIYRWRNDDELYD--PNDANLVMYDSTMSPRLRERLQHIMNELISTEIDYVGSLEYILEHYLPEMQGENVPSFLLGKKNVLFGNIERIYDFHKRYFSQEVESYRHQPLHIGQCFLKWERQFYLYALYNKNKPKSDELWNDYANAHFMKKMRELKDKLDLASYLIKPVQRLGKYSLLLEDMIKCCVEQDPRLVELKKAHDLVKFQLRHGNDLLAMDSIRSSDVSMKDQGCLIRQADFTIVSGRRKQERRVFLFEDLLVFAKTKKTKGKGDEFIYKQSIKMVDLGLTENIGESGLRFEVWYRRWKKGKATESYILQAPSASEKNDWTLAISQILWKQATKNKEYGLTEQ-STGIS 3732
+L DL +ELL + +A LPG D +G V+ + W ++ S EL RLL+Y IPR +LG ++++DAR + + + + QE PGAV VL +L+ ++ L E Q S + L I LPT GG L Y H+ W+ FR ++E + C++A I+ + E +LL + + + +VL+ P L L+ +G L + +E L+ DY+ ++ + L++++ + +L S++R+Q+LEL + E Q+ W+ + G P L E SLD + F+ A++ + G+++++ LT E E D + LR +E+S A+R ++L QL + A W + +A + Q + G+ + HP+ + KM LA LG + + + +C D L+ K L L S + + + Y DR+ G+S+ + + I R + P + V + PR RLQ ++ E+++TE +YV +LEY +E+Y PE+ +VP L G++ LFGN+E++ DFH +F +E+E+ P + FL+ QF +YALY+KNKP+SD L + Y + F K + L D LDLASYL+KP+QR+GKY+LLL+++ + C L L++A LV FQLRHGNDLLAMD+I+ DV++K+QG L+RQ +F + +GR K RR+FLFE+LL+F+K + D F YK+S KM DLGLTE G S LRFE+W+RR KA ++++LQA S + K WT IS +LW+QA NKE + E S G+
Sbjct: 180 LLAQDLCWELLASGMATLPGTRDVQGRAVLLLCAHSPAWLQSECSSQELIRLLLYLRSIPRPEVQALGLTVLVDARICAPSSSLFSGLSQ----LQEAAPGAVY--QVLLVGSTLL-----KEVPSGLQLE-QLPS--QSLLTHIPTAGLPTSLGGGLPYCHQAWLDFRRRLEALLQNCQAACALLQGAIESVKAVPQPMEPGEVGQLLQQTEVLMQQVLDSPWLAWLQCQGGRELTWLK-QEVPEVTLSPDYRTAMDKADELYDRVDGLLHQLTLQSNQRIQALELVQTLEARESGLHQIEVWLQQVGWPAL--EEAGEPSLDMLLQAQGSFQELYQVAQEQVRQGEKFLQ---PLTGWEAAELDPP--GARFLALRAQLTEFSRALAQRCQRLADAERLFQLFREALTWAEEGQRVLAELE----QERPGV--VLQQLQLHWTRHPDLPPAHFRKMWALATGLGSEAIRQECRWAWARCQDTWLALDQKLEASLK------------LPPVGSTASLCVSQVPAAPAHPPLRKAYS-FDRNLGQSLSEPACHCHHAATIAACRRPEAGGGALPQASPTVPPPGSSDPRSLNRLQLVLAEMVATEREYVRALEYTMENYFPELDRPDVPQGLRGQRAHLFGNLEKLRDFHCHFFLRELEACTRHPPRVAYAFLRHRVQFGMYALYSKNKPRSDALMSSYGHTFFKDKQQALGDHLDLASYLLKPIQRMGKYALLLQELARACGGPTQELSALREAQSLVHFQLRHGNDLLAMDAIQGCDVNLKEQGQLVRQDEFVVRTGRHKSVRRIFLFEELLLFSKPRHGPTGVDTFAYKRSFKMADLGLTECCGNSNLRFEIWFRR---RKARDTFVLQASSLAIKQAWTADISHLLWRQAVHNKEVRMAEMVSMGVG 1047 The following BLAST results are available for this feature:
BLAST of TCONS_00016596 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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