TCONS_00016586 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016586
Unique NameTCONS_00016586
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1240

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016586 ID=TCONS_00016586|Name=TCONS_00016586|organism=Clytia hemisphaerica|type=transcript|length=1240bp
ATATAAACAGAGAATACGAGAGATGCAGGAAATATGCAATATTTAACAAA
TTCTGAGCATGCAGATTGACGATTTTGTCAACAACTGCAAAAATATCTTC
TGTTGTATTCCACGGCTTGATTCCTGTCGAGACAACAACATGATTTGGAA
TTATACCAAGCGTTTAACAGGATCGAGctattttgaatttattattgGAT
GTAGATTTTATAAAGGTTGGAGAAAATGGCAGAAAACAGTGAAacttttg
taaacattcatttACACCCGAGGGCGTATTACGATGAAAATCCGCCCAGC
ACAGCGGAAGATGAAAAACAACCTATACTATCTGAACAAGGCGTTGGGAA
GCCTTACACTGTCGAAATTAATCCAACCAATCAGAGCGAAGAGCCAGAGT
CATCgaccaatgaaaatgaagaaagcaaaaatttgaccaaTGAGGCTGAA
GCAAGACTTGATATCCCGTACAGAAAGCCTCGTTATCCTTTATCACATCT
ATTTTCGGCTACCGTGTGTTTAATTGAGGTGCTTGGTGtgattttgttta
tctttttgttGGCATGGTTATTAAATTATCATGGTGGATTTGAATGGGAT
GGCGCGTCAAAAGAATTCAACTATCATGCGCTGTTCATGTTCCTTGGTTT
TGTCTTCTTCTACTCAAATGCTGCTGTTTCTTCATACTCAATGAACCAAA
AACAAGTGACGTCAATTCATTATTTTCACGTCGTGTCGGTGTTACTGACG
ttgtttttcactttctttggaTTCATTGTCGGACTTCAAGTAGATAAACG
ATTTTATTCTTTTCACACGTGGATTGGCATGGTTACACTtgtgttgtttt
ttattcaGgctttaTATGGACTTTGCTGCATTTTCATCAAGATTCCTGAA
CGTCTTCGACAATTTGCCAGAAAGTTTGAGATCTGGCTGTTTCTGTGTGT
CTTCTTATGTGCGATACTGGCAaccattttgggaatatcaGAATACATTA
ATAACAGGCCAGGGCACGATGGTTCAACATTCTCATTCGAATCCATTGTT
ACAAACGTGATCAGTCTCTTATTAGTTGTTTTCTCTTTACTAGTTACCAG
TGTTCTCATGCACCCTATTTATCAAAAGGAAAGGCTAGATAGATAAACAT
CATGATGTACATTATCACAAGTAAACTAGGTTCCagtcttcacttttttt
tcatgagaacaattttataagaataatgagaCCATGGCTC
Run BLAST on NCBI

protein sequence of TCONS_00016586-protein

>TCONS_00016586-protein ID=TCONS_00016586-protein|Name=TCONS_00016586-protein|organism=Clytia hemisphaerica|type=polypeptide|length=306bp
MAENSETFVNIHLHPRAYYDENPPSTAEDEKQPILSEQGVGKPYTVEINP
TNQSEEPESSTNENEESKNLTNEAEARLDIPYRKPRYPLSHLFSATVCLI
EVLGVILFIFLLAWLLNYHGGFEWDGASKEFNYHALFMFLGFVFFYSNAA
VSSYSMNQKQVTSIHYFHVVSVLLTLFFTFFGFIVGLQVDKRFYSFHTWI
GMVTLVLFFIQALYGLCCIFIKIPERLRQFARKFEIWLFLCVFLCAILAT
ILGISEYINNRPGHDGSTFSFESIVTNVISLLLVVFSLLVTSVLMHPIYQ
KERLDR
Run BLAST on NCBI

transcript from alignment at sc0000243:369120..371425+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016586 ID=TCONS_00016586|Name=TCONS_00016586|organism=Clytia hemisphaerica|type=transcript|length=2306bp|location=Sequence derived from alignment at sc0000243:369120..371425+ (Clytia hemisphaerica)
ATATAAACAGAGAATACGAGAGATGCAGGAAATATGCAATATTTAACAAA
TTCTGAGCATGCAGATTGACGATTTTGTCAACAACTGCAAAAATATCTTC
TGTTGTATTCCACGGCTTGATTCCTGTCGAGACAACAACATGATTTGGAA
TTATACCAAGCGTTTAACAGGATCGAGctattttgaatttattattgGAT
GTAGATTTTATAAAGGTTGGAGGTGAGAGACTTTTTAGGAAACTATGTAT
TGTCTTCCTTAGCTAATTTGAACTCGAAATAGATAATCCAAATACCTCGC
GGAAATATATACACTTAAGGTACATACAATAAAGATCCGAATTAGAAAGA
ATTTTATGAATAATCCTTGTTGATCCTTTAGAAATTAGTTTGAATTAGCG
AGGGTCCACCTGTTCTCAAAAACGGAATATTTTCTATTGGCTTTTGACTT
GTGCCCCAAACTCATCAATAGTCAAAATCGGTTTTGTTTCTTATGTAGAA
AATGGCAGAAAACAGTGAAacttttgtaaacattcatttACACCCGAGGG
CGTATTACGATGAAAATCCGCCCAGCACAGCGGAAGATGAAAAACAACCT
ATACTATCTGAACAAGGCGTTGGGAAGCCTTACACTGTCGAAATTAATCC
AACCAATCAGAGCGAAGAGCCAGAGTCATCgaccaatgaaaatgaagaaa
gcaaaaatttgaccaaTGAGGCTGAAGCAAGACTTGATATCCCGTACAGA
AAGCCTCGTTATCCTTTATCACATCTATTTTCGGCTACCGTGTGTTTAAT
TGAGGTGCTTGGTGtgattttgtttatctttttgttGGCATGGTTATTAA
ATTATCATGGTGGATTTGAATGGGATGGCGCGTCAAAAGAATTCAACTAT
CATGCGCTGTTCATGTTCCTTGGTTTTGTCTTCTTCTACTCAAATGGTAT
GTTTTTAAACATTACTAACCCACTACTCTCTGTTGTCCAATAAACGGTTG
GTtgggaaaattttgataaactCGACTCGTGAGTTTGAGACTGTACCTAT
CTATATACCCCTAAAATAAGGTAATCTTGAACTCGCTTTTCCTGTTTAGC
TGCTGTTTCTTCATACTCAATGAACCAAAAACAAGTGACGTCAATTCATT
ATTTTCACGTCGTGTCGGTGTTACTGACGttgtttttcactttctttgga
TTCATTGTCGGACTTCAAGTAGATAAACGATTTTATTCTTTTCACACGTG
GATTGGCATGGTTACACTtgtgttgttttttattcaGGTGAGTGAATTGT
TTGGGTCAGTACTTTATTTACCAGTCATGCAATCGTTAACCCTTTCTTGC
ATCTTGGGGGTtcattttttgctcaaaatttgagAGACAACTCACATGGG
CCTCTAGTTTAGATGCTTATGCTTCCACTACTAAAAATATCCAAGGGTCG
ACTGATGTTTGTCCGAGGGGTTAGACCAGTTGTCCGGGAGGGGGGGGGtt
aaagtcacaatgtccggggggtaaatttcaaattcaaatatttttctgga
aaagccctggagatggggatggaaaaaaaacattgctttcatctgtccct
tttttaggctttaTATGGACTTTGCTGCATTTTCATCAAGATTCCTGAAC
GTCTTCGACAATTTGCCAGAAAGTTTGAGATCTGGCTGTTTCTGTGTGTC
TTCTTATGTGCGATACTGGCAaccattttgggaatatcaGAATACATTAA
TAACAGGCCAGGGTAAGAATTATTTAAACATTTTGCAGTGCGATATGATT
TTGATGCGTGCACAAGCAAAGAGTCTAGTGTAAAGGTAAAGCATTTCGCT
AcagtgcgcaaggttgtgggttcactCCCAGGCCGGGTCATACTAAAGAC
TTCGTACTTACGAGATTGGTTCTTTATACATGGTGCTTAGCGATTAAAGA
TAAAGATCAAGACTTAGTGGGGCGATCTAGGGAAAAAGAGTTGCACTTTC
GGGTCGAGACTTACTTATAAATATTCAGCTTTCATATCATCAAAGGTTTT
ACACAGAAttcttcttttctattttacagGCACGATGGTTCAACATTCTC
ATTCGAATCCATTGTTACAAACGTGATCAGTCTCTTATTAGTTGTTTTCT
CTTTACTAGTTACCAGTGTTCTCATGCACCCTATTTATCAAAAGGAAAGG
CTAGATAGATAAACATCATGATGTACATTATCACAAGTAAACTAGGTTCC
agtcttcacttttttttcatgagaacaattttataagaataatgagaCCA
TGGCTC

Coding sequence (CDS) from alignment at sc0000243:369120..371425+

>TCONS_00016586 ID=TCONS_00016586|Name=TCONS_00016586|organism=Clytia hemisphaerica|type=CDS|length=3684bp|location=Sequence derived from alignment at sc0000243:369120..371425+ (Clytia hemisphaerica)
ATGGCAGAAAACAGTGAAacttttgtaaacattcatttACACCCGAGGGC
GTATTACGATGAAAATCCGCCCAGCACAGCGGAAGATGAAAAACAACCTA
TACTATCTGAACAAGGCGTTGGGAAGCCTTACACTGTCGAAATTAATCCA
ACCAATCAGAGCGAAGAGCCAGAGTCATCgaccaatgaaaatgaagaaag
caaaaatttgaccaaTGAGGCTGAAGCAAGACTTGATATCCCGTACAGAA
AGCCTCGTTATCCTTTATCACATCTATTTTCGGCTACCGTGTGTTTAATT
GAGGTGCTTGGTGtgattttgtttatctttttgttGGCATGGTTATTAAA
TTATCATGGTGGATTTGAATGGGATGGCGCGTCAAAAGAATTCAACTATC
ATGCGCTGTTCATGTTCCTTGGTTTTGTCTTCTTCTACTCAAATGCTGCT
GTTTCTTCATACTCAATGAACCAAAAACAAGTGACGTCAATTCATTATTT
TCACGTCGTGTCGGTGTTACTGACGttgtttttcactttctttggaTTCA
TTGTCGGACTTCAAGTAGATAAACGATTTTATTCTTTTCACACGTGGATT
GGCATGGTTACACTtgtgttgttttttattcaGgctttaTATGGACTTTG
CTGCATTTTCATCAAGATTCCTGAACGTCTTCGACAATTTGCCAGAAAGT
TTGAGATCTGGCTGTTTCTGTGTGTCTTCTTATGTGCGATACTGGCAacc
attttgggaatatcaGAATACATTAATAACAGGCCAGGGCACGATGGTTC
AACATTCTCATTCGAATCCATTGTTACAAACGTGATCAGTCTCTTATTAG
TTGTTTTCTCTTTACTAGTTACCAGTGTTCTCATGCACCCTATTTATCAA
AAGGAAAGGCTAGATAGATAAATGGCAGAAAACAGTGAAacttttgtaaa
cattcatttACACCCGAGGGCGTATTACGATGAAAATCCGCCCAGCACAG
CGGAAGATGAAAAACAACCTATACTATCTGAACAAGGCGTTGGGAAGCCT
TACACTGTCGAAATTAATCCAACCAATCAGAGCGAAGAGCCAGAGTCATC
gaccaatgaaaatgaagaaagcaaaaatttgaccaaTGAGGCTGAAGCAA
GACTTGATATCCCGTACAGAAAGCCTCGTTATCCTTTATCACATCTATTT
TCGGCTACCGTGTGTTTAATTGAGGTGCTTGGTGtgattttgtttatctt
tttgttGGCATGGTTATTAAATTATCATGGTGGATTTGAATGGGATGGCG
CGTCAAAAGAATTCAACTATCATGCGCTGTTCATGTTCCTTGGTTTTGTC
TTCTTCTACTCAAATGCTGCTGTTTCTTCATACTCAATGAACCAAAAACA
AGTGACGTCAATTCATTATTTTCACGTCGTGTCGGTGTTACTGACGttgt
ttttcactttctttggaTTCATTGTCGGACTTCAAGTAGATAAACGATTT
TATTCTTTTCACACGTGGATTGGCATGGTTACACTtgtgttgttttttat
tcaGgctttaTATGGACTTTGCTGCATTTTCATCAAGATTCCTGAACGTC
TTCGACAATTTGCCAGAAAGTTTGAGATCTGGCTGTTTCTGTGTGTCTTC
TTATGTGCGATACTGGCAaccattttgggaatatcaGAATACATTAATAA
CAGGCCAGGGCACGATGGTTCAACATTCTCATTCGAATCCATTGTTACAA
ACGTGATCAGTCTCTTATTAGTTGTTTTCTCTTTACTAGTTACCAGTGTT
CTCATGCACCCTATTTATCAAAAGGAAAGGCTAGATAGATAAATGGCAGA
AAACAGTGAAacttttgtaaacattcatttACACCCGAGGGCGTATTACG
ATGAAAATCCGCCCAGCACAGCGGAAGATGAAAAACAACCTATACTATCT
GAACAAGGCGTTGGGAAGCCTTACACTGTCGAAATTAATCCAACCAATCA
GAGCGAAGAGCCAGAGTCATCgaccaatgaaaatgaagaaagcaaaaatt
tgaccaaTGAGGCTGAAGCAAGACTTGATATCCCGTACAGAAAGCCTCGT
TATCCTTTATCACATCTATTTTCGGCTACCGTGTGTTTAATTGAGGTGCT
TGGTGtgattttgtttatctttttgttGGCATGGTTATTAAATTATCATG
GTGGATTTGAATGGGATGGCGCGTCAAAAGAATTCAACTATCATGCGCTG
TTCATGTTCCTTGGTTTTGTCTTCTTCTACTCAAATGCTGCTGTTTCTTC
ATACTCAATGAACCAAAAACAAGTGACGTCAATTCATTATTTTCACGTCG
TGTCGGTGTTACTGACGttgtttttcactttctttggaTTCATTGTCGGA
CTTCAAGTAGATAAACGATTTTATTCTTTTCACACGTGGATTGGCATGGT
TACACTtgtgttgttttttattcaGgctttaTATGGACTTTGCTGCATTT
TCATCAAGATTCCTGAACGTCTTCGACAATTTGCCAGAAAGTTTGAGATC
TGGCTGTTTCTGTGTGTCTTCTTATGTGCGATACTGGCAaccattttggg
aatatcaGAATACATTAATAACAGGCCAGGGCACGATGGTTCAACATTCT
CATTCGAATCCATTGTTACAAACGTGATCAGTCTCTTATTAGTTGTTTTC
TCTTTACTAGTTACCAGTGTTCTCATGCACCCTATTTATCAAAAGGAAAG
GCTAGATAGATAAATGGCAGAAAACAGTGAAacttttgtaaacattcatt
tACACCCGAGGGCGTATTACGATGAAAATCCGCCCAGCACAGCGGAAGAT
GAAAAACAACCTATACTATCTGAACAAGGCGTTGGGAAGCCTTACACTGT
CGAAATTAATCCAACCAATCAGAGCGAAGAGCCAGAGTCATCgaccaatg
aaaatgaagaaagcaaaaatttgaccaaTGAGGCTGAAGCAAGACTTGAT
ATCCCGTACAGAAAGCCTCGTTATCCTTTATCACATCTATTTTCGGCTAC
CGTGTGTTTAATTGAGGTGCTTGGTGtgattttgtttatctttttgttGG
CATGGTTATTAAATTATCATGGTGGATTTGAATGGGATGGCGCGTCAAAA
GAATTCAACTATCATGCGCTGTTCATGTTCCTTGGTTTTGTCTTCTTCTA
CTCAAATGCTGCTGTTTCTTCATACTCAATGAACCAAAAACAAGTGACGT
CAATTCATTATTTTCACGTCGTGTCGGTGTTACTGACGttgtttttcact
ttctttggaTTCATTGTCGGACTTCAAGTAGATAAACGATTTTATTCTTT
TCACACGTGGATTGGCATGGTTACACTtgtgttgttttttattcaGgctt
taTATGGACTTTGCTGCATTTTCATCAAGATTCCTGAACGTCTTCGACAA
TTTGCCAGAAAGTTTGAGATCTGGCTGTTTCTGTGTGTCTTCTTATGTGC
GATACTGGCAaccattttgggaatatcaGAATACATTAATAACAGGCCAG
GGCACGATGGTTCAACATTCTCATTCGAATCCATTGTTACAAACGTGATC
AGTCTCTTATTAGTTGTTTTCTCTTTACTAGTTACCAGTGTTCTCATGCA
CCCTATTTATCAAAAGGAAAGGCTAGATAGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009272XLOC_009272Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016586-exon-sc0000243-1491911889:369120..369341TCONS_00016586-exon-sc0000243-1491911889:369120..369341Clytia hemisphaericaexon
TCONS_00016586-exon-sc0000243-1510915933:369120..369341TCONS_00016586-exon-sc0000243-1510915933:369120..369341Clytia hemisphaericaexon
TCONS_00016586-exon-sc0000243-1575043694:369120..369341TCONS_00016586-exon-sc0000243-1575043694:369120..369341Clytia hemisphaericaexon
TCONS_00016586-exon-sc0000243-1491911889:369618..370065TCONS_00016586-exon-sc0000243-1491911889:369618..370065Clytia hemisphaericaexon
TCONS_00016586-exon-sc0000243-1510915933:369618..370065TCONS_00016586-exon-sc0000243-1510915933:369618..370065Clytia hemisphaericaexon
TCONS_00016586-exon-sc0000243-1575043694:369618..370065TCONS_00016586-exon-sc0000243-1575043694:369618..370065Clytia hemisphaericaexon
TCONS_00016586-exon-sc0000243-1491911889:370219..370406TCONS_00016586-exon-sc0000243-1491911889:370219..370406Clytia hemisphaericaexon
TCONS_00016586-exon-sc0000243-1510915933:370219..370406TCONS_00016586-exon-sc0000243-1510915933:370219..370406Clytia hemisphaericaexon
TCONS_00016586-exon-sc0000243-1575043694:370219..370406TCONS_00016586-exon-sc0000243-1575043694:370219..370406Clytia hemisphaericaexon
TCONS_00016586-exon-sc0000243-1491911889:370727..370881TCONS_00016586-exon-sc0000243-1491911889:370727..370881Clytia hemisphaericaexon
TCONS_00016586-exon-sc0000243-1510915933:370727..370881TCONS_00016586-exon-sc0000243-1510915933:370727..370881Clytia hemisphaericaexon
TCONS_00016586-exon-sc0000243-1575043694:370727..370881TCONS_00016586-exon-sc0000243-1575043694:370727..370881Clytia hemisphaericaexon
TCONS_00016586-exon-sc0000243-1491911889:371199..371425TCONS_00016586-exon-sc0000243-1491911889:371199..371425Clytia hemisphaericaexon
TCONS_00016586-exon-sc0000243-1510915933:371199..371425TCONS_00016586-exon-sc0000243-1510915933:371199..371425Clytia hemisphaericaexon
TCONS_00016586-exon-sc0000243-1575043694:371199..371425TCONS_00016586-exon-sc0000243-1575043694:371199..371425Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016586-proteinTCONS_00016586-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000243supercontigsc0000243:369120..371425 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.275288	0.369118	0.0779238	0	0.0928103	0	0.309685	0.0414177	0.550952	0.682443	1.01103	0.985454	2.10548	1.85383	7.28831	9.2264	0.568309	0.688407	0.621854	0.650726	0.0998115	0.194738	0.31564	0.430444	0.33251	0.197838	0.0943686	0.100713	1.48955	0.933916
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006593Cyt_b561/ferric_Rdtase_TM
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016586 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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