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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016540 ID=TCONS_00016540|Name=TCONS_00016540|organism=Clytia hemisphaerica|type=transcript|length=3371bpRun BLAST on NCBI protein sequence of TCONS_00016540-protein >TCONS_00016540-protein ID=TCONS_00016540-protein|Name=TCONS_00016540-protein|organism=Clytia hemisphaerica|type=polypeptide|length=452bp MQVDTTKIFEVERIVCHRAHKGKEEFLVYWKGFENPTWEPVENLLSCGDLRun BLAST on NCBI transcript from alignment at sc0000241:323123..342864+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016540 ID=TCONS_00016540|Name=TCONS_00016540|organism=Clytia hemisphaerica|type=transcript|length=19742bp|location=Sequence derived from alignment at sc0000241:323123..342864+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000241:323123..342864+ >TCONS_00016540 ID=TCONS_00016540|Name=TCONS_00016540|organism=Clytia hemisphaerica|type=CDS|length=10872bp|location=Sequence derived from alignment at sc0000241:323123..342864+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00016540 vs. Swiss-Prot (Human)
Match: CDYL2 (Chromodomain Y-like protein 2 OS=Homo sapiens GN=CDYL2 PE=1 SV=2) HSP 1 Score: 127.102 bits (318), Expect = 2.051e-30 Identity = 71/237 (29.96%), Postives = 130/237 (54.85%), Query Frame = 2
Query: 665 VLCEIDKGYMTITLNNARR-HNILTTDMLDAIRNHMIKAKKNDTIKAVLFCSSGDYFCSGIDYSEFVE--CSDDKTYKILVNDLISCLRNFFTTWFSFTKPIVCAVNGPAFEFGASLVVGSDFSYSSAKASFDLMFNKLDLTPIGCVTHLLPKIVGRGLAHSMMYLGGHYSAATSFDRGLVLDMYGVNSFSEDIEKRMLQLATNSTHCLQATKRIVQFLQDDTIEDIYSEELKLYQQ 1366
++ ++G+ I L++ +N LT +++ +R + A +D+ K +L + G FCSG+DYS + SD + + + I R+F + F KPIV A+NGPA GAS++ D ++S KA F + + LTP GC ++ P+I+G LA+ M++ G +A + RGLV ++ +FS+++ R+ ++A+ S L+ +K +V+ +ED+ +E + +Q
Sbjct: 252 IVVRKEEGFTHILLSSQTSDNNALTPEIMKEVRRALCNAATDDS-KLLLLSAVGSVFCSGLDYSYLIGRLSSDRRKESTRIAEAI---RDFVKAFIQFKKPIVVAINGPALGLGASILPLCDIVWASEKAWFQTPYATIRLTPAGCSSYTFPQILGVALANEMLFCGRKLTAQEACSRGLVSQVFWPTTFSQEVMLRVKEMASCSAVVLEESKCLVRSFLKSVLEDVNEKECLMLKQ 484 The following BLAST results are available for this feature:
BLAST of TCONS_00016540 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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