TCONS_00016540-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00016540-protein
Unique NameTCONS_00016540-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length452

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00016540-protein ID=TCONS_00016540-protein|Name=TCONS_00016540-protein|organism=Clytia hemisphaerica|type=polypeptide|length=452bp
MQVDTTKIFEVERIVCHRAHKGKEEFLVYWKGFENPTWEPVENLLSCGDL
IEQFHRQAKPIPGANPHQLIRTAKAKTVHVKMLLTRKNKHKRKLTPSLSE
PDTNDKSITPPFKRKGLSESEKLIRDTLLHESKTMKPENTCLNKINGLFD
CYDNNLNNNDIKPMDNNVPNKKLNGRRTVSDSYYRGRNEPSKLVLCEIDK
GYMTITLNNARRHNILTTDMLDAIRNHMIKAKKNDTIKAVLFCSSGDYFC
SGIDYSEFVECSDDKTYKILVNDLISCLRNFFTTWFSFTKPIVCAVNGPA
FEFGASLVVGSDFSYSSAKASFDLMFNKLDLTPIGCVTHLLPKIVGRGLA
HSMMYLGGHYSAATSFDRGLVLDMYGVNSFSEDIEKRMLQLATNSTHCLQ
ATKRIVQFLQDDTIEDIYSEELKLYQQSLLSKETRKKMKDDWAMRINLYS
DI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009243XLOC_009243Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00016540TCONS_00016540Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000953Chromo/chromo_shadow_dom
IPR023780Chromo_domain
IPR001753Crotonase_core_superfam
IPR029045ClpP/crotonase-like_dom
IPR016197Chromodomain-like
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
molecular_function GO:0003824 catalytic activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000953Chromo/chromo shadow domainSMARTSM00298chromo_7coord: 8..59
e-value: 4.9E-11
score: 52.7
IPR000953Chromo/chromo shadow domainPROSITEPS50013CHROMO_2coord: 9..57
score: 15.797
NoneNo IPR availableGENE3D3.90.226.10coord: 186..441
e-value: 1.9E-45
score: 154.6
NoneNo IPR availableGENE3D2.40.50.40coord: 6..60
e-value: 2.1E-14
score: 52.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 89..113
NoneNo IPR availableCDDcd06558crotonase-likecoord: 194..371
e-value: 2.28098E-43
score: 151.174
NoneNo IPR availableCDDcd00024CHROMOcoord: 9..57
e-value: 3.02478E-12
score: 60.7407
IPR023780Chromo domainPFAMPF00385Chromocoord: 9..56
e-value: 6.6E-11
score: 41.9
IPR001753Crotonase superfamilyPFAMPF00378ECH_1coord: 198..435
e-value: 3.6E-29
score: 101.7
IPR029045ClpP/crotonase-like domainSUPERFAMILY52096ClpP/crotonasecoord: 192..440
IPR016197Chromo domain-likeSUPERFAMILY54160Chromo domain-likecoord: 3..60

Blast
[Close]
BLAST of TCONS_00016540-protein vs. Swiss-Prot (Human)
Match: CDYL2 (Chromodomain Y-like protein 2 OS=Homo sapiens GN=CDYL2 PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 6.411e-32
Identity = 71/237 (29.96%), Postives = 130/237 (54.85%), Query Frame = 0 
Query:  194 VLCEIDKGYMTITLNNARR-HNILTTDMLDAIRNHMIKAKKNDTIKAVLFCSSGDYFCSGIDYSEFVE--CSDDKTYKILVNDLISCLRNFFTTWFSFTKPIVCAVNGPAFEFGASLVVGSDFSYSSAKASFDLMFNKLDLTPIGCVTHLLPKIVGRGLAHSMMYLGGHYSAATSFDRGLVLDMYGVNSFSEDIEKRMLQLATNSTHCLQATKRIVQFLQDDTIEDIYSEELKLYQQ 427
            ++   ++G+  I L++    +N LT +++  +R  +  A  +D+ K +L  + G  FCSG+DYS  +    SD +     + + I   R+F   +  F KPIV A+NGPA   GAS++   D  ++S KA F   +  + LTP GC ++  P+I+G  LA+ M++ G   +A  +  RGLV  ++   +FS+++  R+ ++A+ S   L+ +K +V+      +ED+  +E  + +Q
Sbjct:  252 IVVRKEEGFTHILLSSQTSDNNALTPEIMKEVRRALCNAATDDS-KLLLLSAVGSVFCSGLDYSYLIGRLSSDRRKESTRIAEAI---RDFVKAFIQFKKPIVVAINGPALGLGASILPLCDIVWASEKAWFQTPYATIRLTPAGCSSYTFPQILGVALANEMLFCGRKLTAQEACSRGLVSQVFWPTTFSQEVMLRVKEMASCSAVVLEESKCLVRSFLKSVLEDVNEKECLMLKQ 484
The following BLAST results are available for this feature:
BLAST of TCONS_00016540-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CDYL26.411e-3229.96Chromodomain Y-like protein 2 OS=Homo sapiens GN=C... [more]
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