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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016531 ID=TCONS_00016531|Name=TCONS_00016531|organism=Clytia hemisphaerica|type=transcript|length=9812bp transcript from alignment at sc0000241:141300..204471+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016531 ID=TCONS_00016531|Name=TCONS_00016531|organism=Clytia hemisphaerica|type=transcript|length=63172bp|location=Sequence derived from alignment at sc0000241:141300..204471+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00016531 vs. Swiss-Prot (Human)
Match: DYH5 (Dynein heavy chain 5, axonemal OS=Homo sapiens GN=DNAH5 PE=1 SV=3) HSP 1 Score: 3793.05 bits (9835), Expect = 0.000e+0 Identity = 1878/3236 (58.03%), Postives = 2420/3236 (74.78%), Query Frame = 1
Query: 319 QIKANKEALKASLSEEHRYIISIVAFKLDLPIXXXXXXXXXXXXGLELFANFLRIGGQRTLLFYYQHCD----GDIAAEARAKAIHHTQAEDPLTLFITDGTTKPLIGHLLYFIKPSSQKELKIRNIHEDVCFGLMDCSNGCGILYAIGQMMANVYTPAISAIDK-WGDLDASPAGILHRREFLKTLSSFTHFVDATHIALSDTIELAKCEVIDTTEYTTTKQYLSVANNAXXXXXXXXXXXXWSKQIEQVLAESEQMRKEADDTGPIAELEHWRQRRAKFNTLLDQMKSSDCKTVIAILIHAKSKVLKIWKELDNRITDAANEAKDNVKYLDTLEKSCQPLYQSNPIKMITAIPKLISAIQMIHSTSQYYNTSQRMTSLFIKVTNQMVTACKDYITDNQLNRIWDQPRKPLIEKLENCVKLNQEYQNCFQKTKQKIEEDPSEKPFEFSEMYIFGKFDTFCRRLQKITELMTYLETYSVLHVSKIEGIDVLAGRFDNIYKNMKQKSYDILDHRKTDFDHDFEEFKVRINELEIQLQCFMDDCFDKIPTTIQALQLLERFEKLNVPSMKETIDYKYDQLFQQFGAEVIKVGRLYDKCKEDPPTPRNLPPIAGKIAWARQLTRRIRDPMNYFEKRLATIRKKEHNKIIHQFNKCAQIILQFEMLYFDAWCEDVSAIKTGLQVSLLVRNKKTGQLMVNFDPSITQIIRETDCMLKMELDIPEPAKIIYQRQDQLKEYQHKLKVMIEERERVQELIPAMFLPMLKPHLNKVEARIAPGLTMLSWNSLKIQDYIKDVHDHLNDLELLNKQVMDIRDARIDSLLHEIITTNLCEVPGDEPWTVEHFEKRTAEISAAAAITVEATSLRIEQAVGNMLDVF-----------------------KTSYEKVKEGSRPTMKQ--DQTESTELVAWNERMKIQDAELEEEGQELINFFSHKMVDALLKCVRNSLDMLKRRVFQXXXXXXXXXXXXXXXXXXDHPDTLAPFFKADVVLSIPNVTIQPSIDDIQHALNKGYQSILEVCRSVKEW--------------------------------NQLK-TEQTGSF---IP-KTKNYYKYIADHKDVTKLTVMLTSAISATKVDTNKCLEIFDQFMFLWKSDRDEVIQEFLASDPILSEFQAEIIKYMDLEQQITDLQDSFKVGHKALQLNSAPIKLALQVEAQNWKMAIGRSLNFKYRDILEDVVSFVADYSRRLAHPIKDLDDVRFVMAALSDIRQNEIRIDMSILPIEEAYSMLNRYGVQYNREESEKVDSLRYSVQKLFSQSSSVQTELVKIQPNFKGGLLDAVEVFHVDSNNYTDEYESTGPMVAGISPQEASDRLSLFQTRFDELWRRFQTYSGGEELFGLPVTEYPDLARIKKELGLLQKLYGLYNAVIDGVNGYYDILWHDVDIEKINSELIDFQNRCRRLPKALKEWDAYNELKQKIDDFNECCPLLEMMANKAMKQRHWDRMETLTGHHFDIYNENFCLRNIMEAPLLKHKEDIEDICISAVKEKDIEAKLAQVVTDWKAQSLSFAPFKARGELLLKGAETSEIVGFLEDSLMVLGSLMSNRYNAPFKKDIQSWVQKLSNTSDIIENWMIVQNLWVYLEAVFVGGDIAKQLPKEAKRFQNIDKSWVKIMTRAHETPNVVQCCVGDETMGQLLPHLLEQLEVCQKSLTGYLEKKRLLFPRFFFISDPALLEILGQASDSHTIQAHLLGIFDNTKNVGFHEQDYDRMISIISSEGETVPLEKPIQAKGNVEMWLLDLLNGAQHSLHVVIRDAAISIKDPSFEMMNFFNTFPSQVGLLGIQMIWTRDAEEALVAAKNDKSVMKKTNQYFLDMLNALIDVTIKDLTKMERTKYETLVTIHVHQRDIFDDLTRMHIRTPEDFEWLKQSRFYFKEDTDECLVQITDVEFHYQNEFLGCTDRLVITPLTDRCYITIAQALGMSMXXXXXXXXXXXXXXXXXDMGKALGKYVVVFNCSDQMDFRGLGRIYKGLAQCGAWGCFDEFNRIELPVLSVAAQQIYIVLTAKKERKAEFIFSDGDVVELNSEFGIFLTMNPGYAGRQELPENLKVQFRTVAMMVPDRQIIMRVKLASCGFLENVLLAQKFYTLYKLCEEQLTKQVHYDFGLRNILSVLRTLGANKRQNPNDSESTTVMRILRDMNLSKLVDEDEPLFLSLINDLFPGIVLEKAGYPTLEGFIRKNVEESGLVYHAPWILKLIQLYETQRVRHGLMCLGPSGAGKTVCINMLMKAMGDMGEPHRELRMNPKAITAPQMFGRLDAATNDWTDGIFSTLWRKTLKTKVGDKVWLILDGPVDAIWIENLNSVLDDNKTLTLANGDRITMSPQCKILFEVHNVDNASPATVSRVGMVFMSSSILDWRPYLEGWLRSTRAPQEAEAIQMVFDNVFDSLLALIYQQLSPKMNLLQINVVKQTCDLLAGLIPNRDENGLLATSHLNKLIVFALMWSAGALLELDDRAKMEEHMRS--LKCLDLPPVPAGSNETIFEYVVNDNGDWEHWRNRVQEYIYPPDSKPEYSSILVPNVDNVCTDFLTSTIAKQGKAVLLMGEQGTAKTVMVKGFMAKYDPEVHMGKSFSFSSASTPDLFQRTVESYVDKRVGTTYGPPAGRRMTVFIDDINMPIINEWGDQITNEITRQTMEMRGFYNLDKPGEFTNIVDIQFVGAMIHPGGGRNDIPQRLKRQFSVFNCTLPSNASIDKIFGIIGCGWFCVER-FNDEIAETAKLLVPCTRILWQRTKIKMLPTPAKFHYVFNLRDLSRIWEGMLNATHEGLSSRKDILNLWKHECTRVIADRFTNHEDKGWFHKAIKTALIDELGPELESEVD--DEPFFVDFLRDXXXXXXXXXXDADLDAPKVYEPVPTLEFLSEKLAQYMSQYNEMVRGGSLDLVFFKDAMVHLVKVSRIIRTARGNALLVGVGGSGKQSITRLASFIAGYKNFQITLTRSYNQTNLMDDLKYLYRVAGGEGKGITFIFTDNEIKSESFLEFINNVLSSGEVSNLFARDELDEITNDLVSVMKKELPRVPPTQDNLYNYFISRARTNLHVVLCFSPVGDKFRTRALKFPGLISGCTMDWFSRWPKDALIAVADYFLSKFDVVCTPETKHAVVETMGIIHDGVAESCVDYFERFRRQTHVTPKSYLSFIDGYKDIYGSKKGEIGELAGRMKTGLDKLIEATESVALLAKELVVKEKDLTVASAKADEV 9810
++K KEA +A L H Y+ +IVA LDL VE + +E +GG R L+FYYQ + G + + + + + P +F+T+G L G ++FI+ K + NIH++V F ++D ++G G+L ++ +++++++ PA+ A WG+L+ R+EFL +L F + + +L + + L KC++++ YL++ANN E L ++E+ +++W KQ EQVLAE+ Q+ KEADD GP AELEHW++R +KFN LL+Q+KS D K V+A+L AKSK+LK W+E+D RITDA NEAKDNVKYL TLEK C PLY S+P+ M+ AIP LI+AI+MI+S S YYNTS+++TSLF+KVTNQ+++ACK YIT+N IW+QP+ + EK+ + +KL QEYQ CF KTKQK++++P+ K F+FSEMYIFGKF+TF RRL KI ++ T L+TYSVL S IEG++ +A ++ I +K+K Y+ LD RK DFD D+EEF + N+L +L+ FMD F KI T QAL++L++FE+LN+P++ ID KY + + +GA++ + +LY K K DPP RN PPIAGKI WARQL RI+ PM F++ A + E II +N+ A+++L+FE+L+ AW + I GL+ SLLV+ TG+L VNFDP I + RET+CM +M L++ A ++Q++D+ K +K+M+ E +RV+ IPA ++ PHL KV+ + PGL L+W SL I+ Y+++ + DLELL +V D+ + RID++L E+ +T LC++P +EP T E F + T ++ A + S +E+AV ++++ S K +EG+ T+ + + L+ R K + L EE +EL++ F+H+ +DALLK RN+L+ +++R+ + + + S + P F+A V L+IPN+ + P+++D+Q LNK + I+ V + V++W N+L+ T + S IP +TKNYYK ++++K++ KL +L++ I++TK + ++ F ++ +W+ ++E I+ F+ P+LSEF+++I+ + +LEQ+I + VG ++ L +A +K AL E + W + IGR N KYR +E++ + +++++L PIKDLDD+R MAAL +IR+ +I ID + PIEE+Y++LNRYG+ REE +KVD+L Y+ +KL +++ VQ +LV +QP+FK L+ AVEVF D + + +Y+ GPM +G+ PQEASDRL +FQ +FD ++R++ TY+GGEELFGLP T+YP L IKK+L LLQK+Y LYN+VI+ VN YYDILW +V+IEKIN+EL++FQNRCR+LP+ALK+W A+ +LK+ IDDF+ECCPLLE MA+KAM +RHW+R+ TLTGH D+ NE+F LRNIMEAPLLK+KE+IEDICISAVKE+DIE KL QV+ +W ++ +F FK RGELLL+G TSEI+ +EDSLM+LGSL+SNRYN PFK IQ WVQ LSN++DIIE+WM VQNLW+YLEAVFVGGDIAKQLPKEAKRF NIDKSWVKIMTRAHE P+VVQCCVGDET+GQLLPHLL+QLE+CQKSLTGYLEKKRL FPRFFF+SDPALLEILGQASDSHTIQAHLL +FDN K+V FHE+ YDR++SI S EGET+ L+KP+ A+GNVE+WL LL +Q SLH+VIR AA +I++ F++ F ++FP+QVGLLGIQMIWTRD+EEAL AK DK +M+KTNQ FL++LN LIDVT +DL+ ER KYETL+TIHVHQRDIFDDL MHI++P DFEWLKQ RFYF ED+D+ ++ ITDV F YQNEFLGCTDRLVITPLTDRCYIT+AQALGMSMG APAGPAGTGKTETTKDMG+ LGKYVVVFNCSDQMDFRGLGRI+KGLAQ G+WGCFDEFNRI+LPVLSVAAQQI I+LT KKE K FIF+DGD V +N EFG+FLTMNPGYAGRQELPENLK+ FR+VAMMVPDRQII+RVKLASCGF++NV+LA+KF+TLYKLCEEQL+KQVHYDFGLRNILSVLRTLGA KR NP D+EST VMR+LRDMNLSKL+DEDEPLFLSLI DLFP I+L+KAGYP LE I + VEE+GL+ H PW LK+IQL+ETQRVRHG+M LGPSGAGKT CI+ LM+AM D G+PHRE+RMNPKAITAPQMFGRLD ATNDWTDGIFSTLWRKTL+ K G+ +W+ILDGPVDAIWIENLNSVLDDNKTLTLANGDRI M+P CKI+FE HN+DNASPATVSR GMVFMSSSILDW P LEG+L+ R+PQEAE ++ ++ F L Q L KM +L+ V+ Q+ ++L GLIP +++ G ++ +HL +L VFAL+WSAGA LELD R ++E +RS L+LPP PAG +T F+Y V +G W HW R QEY+YP D+ PEY SILVPNVDNV TDFL TIAKQGKAVLL+GEQGTAKTV++KGFM+KYDPE HM KS +FSSA+TP +FQRT+ESYVDKR+GTTYGPPAG++MTVFIDD+NMPIINEWGDQ+TNEI RQ ME GFYNL+KPGEFT+IVDIQF+ AMIHPGGGRNDIPQRLKRQFS+FNCTLPS AS+DKIFG+IG G +C +R F++E+ ++ LVP TR LWQ TKIKMLPTPAKFHYVFNLRDLSR+W+GMLN T E + D+L LWKHEC RVIADRFT D WF KA+ + + +E G E + VD + +FVDFLRD PE GE E+AD + PK+YEP+ + L E+L ++ YNE +RG +D+VFF DAMVHLVK+SR+IRT +GNALLVGVGGSGKQS+TRLASFIAGY +FQITLTRSYN +NLM+DLK LYR AG +GKGITFIFTDNEIK ESFLE++NNVLSSGEVSNLFARDE+DEI +DL SVMKKE PR PT +NL++YF+SR R NLH+VLCFSPVG+KFR RALKFP LISGCT+DWFSRWPKDAL+AV+++FL+ +D+ C+ E K VV+ MG DGVAE CVDYF+RFRR THVTPKSYLSFI GYK IYG K E+ LA RM TGL+KL EA+ESVA L+KEL KEK+L VA+ KAD V
Sbjct: 21 RLKGEKEAKRALLDARHNYLFAIVASCLDLN-KTEVEDAILEGNQIERIDQLFAVGGLRHLMFYYQDVEEAETGQLGSLGGVNLVS-GKIKKP-KVFVTEGNDVALTGVCVFFIRTDPSKAITPDNIHQEVSFNMLDAADG-GLLNSVRRLLSDIFIPALRATSHGWGELEGLQDAANIRQEFLSSLEGFVNVLSGAQESLKEKVNLRKCDILELKTLKEPTDYLTLANNPETLGKIEDCMKVWIKQTEQVLAENNQLLKEADDVGPRAELEHWKKRLSKFNYLLEQLKSPDVKAVLAVLAAAKSKLLKTWREMDIRITDATNEAKDNVKYLYTLEKCCDPLYSSDPLSMMDAIPTLINAIKMIYSISHYYNTSEKITSLFVKVTNQIISACKAYITNNGTASIWNQPQDVVEEKILSAIKLKQEYQLCFHKTKQKLKQNPNAKQFDFSEMYIFGKFETFHRRLAKIIDIFTTLKTYSVLQDSTIEGLEDMATKYQGIVATIKKKEYNFLDQRKMDFDQDYEEFCKQTNDLHNELRKFMDVTFAKIQNTNQALRMLKKFERLNIPNL--GIDDKYQLILENYGADIDMISKLYTKQKYDPPLARNQPPIAGKILWARQLFHRIQQPMQLFQQHPAVLSTAEAKPIIRSYNRMAKVLLEFEVLFHRAWLRQIEEIHVGLEASLLVKAPGTGELFVNFDPQILILFRETECMAQMGLEVSPLATSLFQKRDRYKRNFSNMKMMLAEYQRVKSKIPAAIEQLIVPHLAKVDEALQPGLAALTWTSLNIEAYLENTFAKIKDLELLLDRVNDLIEFRIDAILEEMSSTPLCQLPQEEPLTCEEFLQMTKDLCVNGAQILHFKSSLVEEAVNELVNMLLDVEVLSEEESEKISNENSVNYKNESSAKREEGNFDTLTSSINARANALLLTTVTRKKKETEMLGEEARELLSHFNHQNMDALLKVTRNTLEAIRKRIHSSHTINFRDSNSAS-----NMKQNSLPIFRASVTLAIPNIVMAPALEDVQQTLNKAVECIISVPKGVRQWSSELLSKKKIQERKMAALQSNEDSDSDVEMGENELQDTLEIASVNLPIPVQTKNYYKNVSENKEIVKLVSVLSTIINSTKKEVITSMDCFKRYNHIWQKGKEEAIKTFITQSPLLSEFESQILYFQNLEQEINAEPEYVCVG--SIALYTADLKFALTAETKAWMVVIGRHCNKKYRSEMENIFMLIEEFNKKLNRPIKDLDDIRIAMAALKEIREEQISIDFQVGPIEESYALLNRYGLLIAREEIDKVDTLHYAWEKLLARAGEVQNKLVSLQPSFKKELISAVEVFLQDCHQFYLDYDLNGPMASGLKPQEASDRLIMFQNQFDNIYRKYITYTGGEELFGLPATQYPQLLEIKKQLNLLQKIYTLYNSVIETVNSYYDILWSEVNIEKINNELLEFQNRCRKLPRALKDWQAFLDLKKIIDDFSECCPLLEYMASKAMMERHWERITTLTGHSLDVGNESFKLRNIMEAPLLKYKEEIEDICISAVKERDIEQKLKQVINEWDNKTFTFGSFKTRGELLLRGDSTSEIIANMEDSLMLLGSLLSNRYNMPFKAQIQKWVQYLSNSTDIIESWMTVQNLWIYLEAVFVGGDIAKQLPKEAKRFSNIDKSWVKIMTRAHEVPSVVQCCVGDETLGQLLPHLLDQLEICQKSLTGYLEKKRLCFPRFFFVSDPALLEILGQASDSHTIQAHLLNVFDNIKSVKFHEKIYDRILSISSQEGETIELDKPVMAEGNVEVWLNSLLEESQSSLHLVIRQAAANIQETGFQLTEFLSSFPAQVGLLGIQMIWTRDSEEALRNAKFDKKIMQKTNQAFLELLNTLIDVTTRDLSSTERVKYETLITIHVHQRDIFDDLCHMHIKSPMDFEWLKQCRFYFNEDSDKMMIHITDVAFIYQNEFLGCTDRLVITPLTDRCYITLAQALGMSMGGAPAGPAGTGKTETTKDMGRCLGKYVVVFNCSDQMDFRGLGRIFKGLAQSGSWGCFDEFNRIDLPVLSVAAQQISIILTCKKEHKKSFIFTDGDNVTMNPEFGLFLTMNPGYAGRQELPENLKINFRSVAMMVPDRQIIIRVKLASCGFIDNVVLARKFFTLYKLCEEQLSKQVHYDFGLRNILSVLRTLGAAKRANPMDTESTIVMRVLRDMNLSKLIDEDEPLFLSLIEDLFPNILLDKAGYPELEAAISRQVEEAGLINHPPWKLKVIQLFETQRVRHGMMTLGPSGAGKTTCIHTLMRAMTDCGKPHREMRMNPKAITAPQMFGRLDVATNDWTDGIFSTLWRKTLRAKKGEHIWIILDGPVDAIWIENLNSVLDDNKTLTLANGDRIPMAPNCKIIFEPHNIDNASPATVSRNGMVFMSSSILDWSPILEGFLKK-RSPQEAEILRQLYTESFPDLYRFCIQNLEYKMEVLEAFVITQSINMLQGLIPLKEQGGEVSQAHLGRLFVFALLWSAGAALELDGRRRLELWLRSRPTGTLELPP-PAGPGDTAFDYYVAPDGTWTHWNTRTQEYLYPSDTTPEYGSILVPNVDNVRTDFLIQTIAKQGKAVLLIGEQGTAKTVIIKGFMSKYDPECHMIKSLNFSSATTPLMFQRTIESYVDKRMGTTYGPPAGKKMTVFIDDVNMPIINEWGDQVTNEIVRQLMEQNGFYNLEKPGEFTSIVDIQFLAAMIHPGGGRNDIPQRLKRQFSIFNCTLPSEASVDKIFGVIGVGHYCTQRGFSEEVRDSVTKLVPLTRRLWQMTKIKMLPTPAKFHYVFNLRDLSRVWQGMLNTTSEVIKEPNDLLKLWKHECKRVIADRFTVSSDVTWFDKALVSLVEEEFGEEKKLLVDCGIDTYFVDFLRDAPEAAGETSEEADAETPKIYEPIESFSHLKERLNMFLQLYNESIRGAGMDMVFFADAMVHLVKISRVIRTPQGNALLVGVGGSGKQSLTRLASFIAGYVSFQITLTRSYNTSNLMEDLKVLYRTAGQQGKGITFIFTDNEIKDESFLEYMNNVLSSGEVSNLFARDEIDEINSDLASVMKKEFPRCLPTNENLHDYFMSRVRQNLHIVLCFSPVGEKFRNRALKFPALISGCTIDWFSRWPKDALVAVSEHFLTSYDIDCSLEIKKEVVQCMGSFQDGVAEKCVDYFQRFRRSTHVTPKSYLSFIQGYKFIYGEKHVEVRTLANRMNTGLEKLKEASESVAALSKELEAKEKELQVANDKADMV 3241 The following BLAST results are available for this feature:
BLAST of TCONS_00016531 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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