TCONS_00016526 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00016526
Unique Name	TCONS_00016526
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3178

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000241:133621..140063+
coding sequence from alignment at sc0000241:133621..140063+

transcript sequence

>TCONS_00016526 ID=TCONS_00016526|Name=TCONS_00016526|organism=Clytia hemisphaerica|type=transcript|length=3178bp
GTCAAATTCTTGGAAGCTTGCCCTATCAAGAAAAGAAAGAAACTGTGCTA
GACGAACAAAACGAGTTTGTAACATGGACGAGGGATGCGAGAAGAAAATG
GCGAACGAAGCAGTTACTTCTAAACCTCCAATTAGAGCTTGTGTTAGAGA
ATTTAGTGTTTATGTAAAGCTAAGAGATGATATTTGTTACCTGTTGAGAT
GTAAGGAAGATGCTAAAGGACAAGACATCATGGATGAGaTGTGTGACAAA
CTTGGGATTATTGAAAAAGATTACTTTGGCCTTCAGTATTTCACCCGAAA
TAATGAAGCACACTGGCTCAATATGAGAAACAAAGTTATCCGGCAAGTAA
ACAAGCCCCATCTACTCTTTAGGGTCAAATTTTACGTCCAACCACATCAG
CTTCTTCAAGAATCGTCAAggaGGCAATTCTTTTTGAATGTGAAATATGA
GATCATGAATGGAAAGTACAACTCCAGTGTTTCAAAAATGCCTCGTTTAT
ATGCACTGATTGCTCAAGTTGAAGCAGGAAAATTTCGAGAGAACCATATC
AGCTATAACCCATCAAGAGCATCAAGCTGGGATGCAGATTTTAGAACAAA
AGTGATTTTAGAACATTGTAAACTCCAAGATATGACACCAGAAGTTGCAG
AATTTTTCTGTCTCAGAGAAATTGCTGAACTTGAGGAATATGGAATGGAA
ACATGTACAGTACGTAGTGAAGATAATAATCATGTTGTGGAATTTGGTAT
CGGAATAGATTGTATCAGGATAGATCACGGAGAAGATGAAATACAGAGCA
TACCATATACTTGCTTGAAAATGGCTACACACTCAGGAAAGACTGTTAAA
TTGAACATTGTTGTATCAGACTGTGGAAATACTGAAACAATCTTGTATCG
TTTAAATTCGAAAGAAGCAGCCGTTTCATTGTATAGATCAATAACAGAAC
ATCATTCATTTTATCGTTGTGATAGTGTAAGACCAGCAGTGAAAGAACAA
GTTGCCAGAGATTTTTTTGATACAATCTTATCATGGTTTCATGAAGATGA
ccagaattatatttttgatacgGAAAGAACATGTAGGGAAGCTTACGATC
ATGCTAGGAGGACACTTTATAATTTTGGATCAACAGCTGTTGCTGATGTT
GTGGCACAGCGCAAAACTCTTTCTAAGGGAACTACAAATGATGAGCCTGA
AACATTAGAAGAGCAAGTAGATAATCTGAAAGAAGAACTAAGATGTTTTA
AGGATGCATTTCATTGCCCAGTTTGTAGAGATTCTGTGGTTGATGTGGTA
TTACAATGTGGACATTTAGTTTGTTCAACTTGTGGAGATATCTGTGAGGA
GTGTCCACTCTGTCGAGTAAATATCACGACGCAAACAAAACTTTATTTAC
CAATTAACCTGTCACAGGACTCGATAGATGTACCTATGGAACAGGCCCCT
GTGGAAGAACATCTGGAAGTAGCATGTGCAATGGAGTAAAATTACGTACA
TGGATGGATCTATGCAAATGGTGGTATGGCAGGATATGGATTTCAATGTT
ATGGAGTCGGGAAATATATTTGTTCACTGTGTGAATACCCTCTTGTGTTT
GGAAAGCCTCaatcaaaaaggaaaattgcAATTTGTTTTATGGAAAGTTT
TCTAATTGTGCAGGGTTTATTATGTTAAATGATACTtgatataaaaaatc
aaaaaaagtgtaTGGAAACTTATCTTTAgtgaaaaattctttattttatt
tagtatgaAACAAATAACAAAGCACTTGAAGTTTGATtgcatttcaaatt
tcaactaGTTGTTTATTTGCACTGCAGTGGAAATATTTAACCAAGCACAT
GTTTCACAAGAAAAGGACTTGTATTTTATAGTTTCCTTTACATTTTCAGA
AGTAGCAGTATTGAAAAATCAGGAGTctgattgaagatttttttaatttt
taaaaaacatgcGTTCACAAAGCATGGTATACACCCTTTACAAGTTGTTT
ATTAGTACTTTATACATATTAAAATAGATGTTTGTAATATAGTCAAAAAC
GTATATAGATGTAAATTCGTATCAAGTTTTGAACGCTAAATCTCTTGCGG
ATTGCTGCAGACTGCTGTTAGCTCGCTTCTGTGAGGTTTGCTGCAGCCAT
GGTCTGTGCTATCTACTCCTGgatttcttttgaataaaacaATTTGTCAA
CTGGTGTTTAAAGCTTGATGTGATTGAAAAAACTATTTAGAGAGATGTtg
taagattttttgtttttatttttaatattgaaatttgaaaaaaaggtatT
TGAGTTTATAATTTGTTCTAATAGTATACTTTAAATTTATATACAAAGAT
TAACATAAAAAGACAGAAATTGTTCTCGAATTTCAAGGCAAGATGTTGTT
TTATCATCTCGTGTTTTTTGCTCAGCTTCAAAATTAGATATAGTTTTTTC
ATACTGGTCATGGAAAGTTCGTGTCAGTTCTAAATGTAATTTAATAACTT
TTCCGAGTGCTTTTTATGGAAAGAGAACAATTttgagcttgattttttgt
ttatttatgatAGATAACATAGTCTTTTAACAATATTATAGGAgcttaaa
aaagagaaaaggggATATTTTTATTATGATCATTTCCGAtgttttcagat
attttttttataaggtgTAATTTTTAGGAGATCTATTGTTAGGCAAATTT
TCTGGCGTCAGATTTCTCTCCCTAAATTTGGTTTCATTGTCTTAATCTCA
ATttattcctttgtttacttgattctattttgctaaattttgaaatatgg
tcCCTAGTCCCTCTAGCTCATTGCNCTCAATttattcctttgtttacttg
attctattttgctaaattttgaaatatgttcCCTAGTCCCTCTAGCTCAT
TGCAAATAAAGAACaagaaacatttgaaaaccTGATAGCTGAAATGTTTG
AACATCACACACTCTCTCTTTGCTGGTCCacgatttaaaagttagatatT
GTCCCTGTAACTATAGATATTTTTTAGGATTACGTCACTAGTATCTGTAG
CACGTATCATTGCTCTGATCTGAACAAAGAGATATTTTATTCCATATtat
tgtgtgcaaaatttttttattttgtttaaatcttaatttaaagaaaaata
aaaactcacttttatatttatttaaaat

Run BLAST on NCBI

protein sequence of TCONS_00016526-protein

>TCONS_00016526-protein ID=TCONS_00016526-protein|Name=TCONS_00016526-protein|organism=Clytia hemisphaerica|type=polypeptide|length=495bp
SNSWKLALSRKERNCARRTKRVCNMDEGCEKKMANEAVTSKPPIRACVRE
FSVYVKLRDDICYLLRCKEDAKGQDIMDEMCDKLGIIEKDYFGLQYFTRN
NEAHWLNMRNKVIRQVNKPHLLFRVKFYVQPHQLLQESSRRQFFLNVKYE
IMNGKYNSSVSKMPRLYALIAQVEAGKFRENHISYNPSRASSWDADFRTK
VILEHCKLQDMTPEVAEFFCLREIAELEEYGMETCTVRSEDNNHVVEFGI
GIDCIRIDHGEDEIQSIPYTCLKMATHSGKTVKLNIVVSDCGNTETILYR
LNSKEAAVSLYRSITEHHSFYRCDSVRPAVKEQVARDFFDTILSWFHEDD
QNYIFDTERTCREAYDHARRTLYNFGSTAVADVVAQRKTLSKGTTNDEPE
TLEEQVDNLKEELRCFKDAFHCPVCRDSVVDVVLQCGHLVCSTCGDICEE
CPLCRVNITTQTKLYLPINLSQDSIDVPMEQAPVEEHLEVACAME

Run BLAST on NCBI

transcript from alignment at sc0000241:133621..140063+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00016526 ID=TCONS_00016526|Name=TCONS_00016526|organism=Clytia hemisphaerica|type=transcript|length=6443bp|location=Sequence derived from alignment at sc0000241:133621..140063+ (Clytia hemisphaerica)
GTCAAATTCTTGGAAGCTTGCCCTATCAAGAAAAGAAAGGTAAAAAGAAT
TCGTCGCTTGGAAAAGTTAGCATTTAGAAGTAggcaggcacgacggaagc
tttttatatctggtacggcgaagNACATGGTGATGTCACTGtttattttg
tccatttttgacGAGGTCAATTCACACGGCCTTTTTGATGACGCCAACAG
GATGGCTATAAAAAGacttatttgtttatatttactTTGCGTTTGCGTAA
TGTTTAAAACTACCCATTGTATTCGTATTTTTTCGCTCTCGCAGAAAACG
TCAAATTCTTGGAAGCTTGCCCTATCAAGAAAAGAAAGGTAAAAAGAATT
CGTCGCTTGGAAAAGTTAGCATTTGGAAGTAGGGGAGAGACTACATACAG
CAGAGGGAGAAGGTTCGCTCTCAGAAAATGACTTAACAGTGTTGTGAAAG
TTAAAGTTACCACGCGTTTTTGGTTGCCGCCCGGGCCGTATATTTACCAG
CCCGCCCAACTTATTCCATTTCAAACGCCCTCCGCCCATTGTGTGTTTGT
GCAACTTTTCGCCATCGTTCTCTCAAAGGAAATCCCAAGGGTTTCCAGTG
AAGTCCAAAGTCTACATTTTACGCAATCATCTTTGATGACTTAATTAGCT
TCTTAACGATTTCCagtgatttgattggttgttCACAAATTATGCTAGTT
GAAAACACGCGTTCCATTGGTTGGTGCTTTGTTACCNTCTACATTTTACG
CAATCATCTTTGATGACTTAATTAGCTTCTTAACGATTTCCagtgatttg
attggttgttCACAAATTATGCTAGTTGAAAACACGCGTTCCATTGGTTG
GTGCTAAATATGCAAAATTCTTTcagaaagaaaaactttgcaaattTCAG
AAACTGTGCTAGACGAACAAAACGAGTTTGTAACATGGACGAGGGATGCG
AGAAGAAAATGGCGAACGAAGCAGTTACTTCTAAACCTCCAATTAGAGCT
TGTGTTAGAGAATTTAGTGTTTATGTAAAGCTAAGAGATGATATTTGTTA
CCTGTTGAGATGTAAGGAAGATGCTAAAGGACAAGACATCATGGATGAGG
TAAAATTCTGACGATTTTATCTAGGGTCCAAAGTCCAATTTTGAATCGAA
GTCCTTTTCTACTTGACCCTACCTTGGCttcttctatttttcttttcaag
tttCCAATCTGATAGAATATTCCTTCAATTGGTTTAGAGGTTTCTCCATT
AGGAAAAGCTTGAAGAAAAACCTCCAGGCTTAGCAgcttaaagttttaaa
ataattaGTGCAATAATATAATTAACATCCCAttaaaaatgtttggaaaa
atccttaaaattgaGGGTGAAGTCAACTTTTCTTGACATGATAAGGGATA
CAATTCATgttaaatttttgtcatttgCTTGCAAACCTACAGTCAGGAGA
TTTGGCCTAATTTCGGCCTTTTATATGCACGCAGCCATTTGTCATACAAA
TCATTGATTGCCAAAACAGATTTGGATAGTTTTtcatataccgtcaactg
ctctaactttggactatctgacaaaacatgggacggcaattcggccacca
tttcaccgaacctccaaggtcatttgatttgagttaaggagcgGCGTATT
AAAAactacacaatttctctttcgattttacagtactGTAAGtgaataca
gaccagatatgcaacagtcccacaTAATTTTCGAAATGGTTGATTTTTTT
CGATCTATGATTTGTATGAAAAATGGCTGCTTGCATAAAAGGCatcaaag
gcgaaaaggtctattaggcAGAAAGAGGACCAGTCTTCAGAGCATGTCAT
GGTTGCCCCCAAGGAAAATTTCCAACATAAAACTCTGCCCCTAAGATCCG
TTTCCCACCACAAAAAAAGCTAgaaaaaacaggtaaatataGCCAGTTTT
CAATGATCTTGCCCCGGAACTGtagatattataaaaattttgCCCCTGCC
CTTGTAAAGTGAGCAATCTTGGCCCTTAAGATCTCAATGATTTCTGTCAC
ACTCTGAAAACTGGAAAGAGGATAAAACAATTAAATTGATAAAATGTGTT
GAATagttaaacaatagaaaaatatactgtaagttggtctaatattgata
tcccttgtctaattccaACACCATTTCTAGAGACAGGAaaaatatgaaag
cttgaatcactgattgaaaaaggattattcctctctgaccaccaagcaaa
gaaaaacagtttcaacccttctatcaatttcagctgataaaaagggtgtc
agaataAGAGGttggatgttgacattagactaAGTTACGGTAGGACATAA
CAGGGGCCGCGGCTCCACATTGAAAGTGGTAGAGCCATGGTTTAGTGTCT
AAGGaagcgccaccatggttggcgctgaggggagaaattttggaaaatta
gcCCCTTCTAGACTGCCTAAAAAAggtctttttcaaggtttttacgcaga
atttagctgaatcagtaaatttttttttgctttgaaaaaatgtggtcggT
GGCCCCCCGCTGCCGCGGCCCCTGCATAAGAACGTAATTagtcaaaatcc
caatgggaaagaaaggctaaaataaaataaagagaCCTGAATAGGAGGCA
AGACGATAGACTCAAGGGACCAAACTAgacaaaaccttagaaaaaaGGTA
TAAATCTCTTGAGGCTTTGAGGCCATGGTTCTATATATATGATCTACTtt
gtgatttatttatttaatgaatgtttattgattttactttcattttttca
tagaTGTGTGACAAACTTGGGATTATTGAAAAAGATTACTTTGGCCTTCA
GTATTTCACCCGAAATAATGAAGCACACTGGCTCAATATGAGAAACAAAG
TTATCCGGCAAGTAAACAAGCCCCATCTACTCTTTAGGGTCAAATTTTAC
GTCCAACCACATCAGCTTCTTCAAGAATCGTCAAggtaaataaatcataa
atcacatAAATGCGTTTTAACTCGCATTTTAGACATGTTGGTGCCAACAG
TCAGTTAGCAATGCTATATTGGAATGGCAAGTTTTGCTTTAGGGGGGAAT
ATTTTCTTGAATAGGaaggttgaaaaaagtttttcatgaAACCGCTAGAA
TTTCCAAATCAGGAAGGTTTTTTTGATTAGGAGATTAGGTATTGAGCACT
CCAGAAACAGCTGCAAAAGATGAAGAAATGTTCCCAATTTGAAAAGAAGG
GAAACAAATTACATTCACTGGATAGTGAGGTCTAGGAAATTTACTGGGTA
CCCAGATTCTTAATTCCTGATTTGGCATATACTTCCCAAAGAAAGCACGA
AAAATTGGTGGAAATTCCAGATGTTTATTTCCTATTTAGGTAACACAACT
TTCCTGttggaaaaataattctcatGATGGAAGTTCTTGTCCTTTCAATA
TAGTGTTTCAGAAATAAAACACCTGCACCTGCCTGTACTCTCTTTAcaaa
tttgacattttctctttttaggaGGCAATTCTTTTTGAATGTGAAATATG
AGATCATGAATGGAAAGTACAACTCCAGTGTTTCAAAAATGCCTCGTTTA
TATGCACTGATTGCTCAAGTTGAAGCAGGAAAATTTCGAGAGAACCATAT
CAGCTATAACCCATCAAGAGCATCAAGCTGGGATGCAGATTTTAGAACAA
AAGTGATTTTAGAACATTGTAAACTCCAAGATATGACACCAGAAGTTGCA
GAATTTTTCTGTCTCAGAGAAATTGCTGAACTTGAGGAATATGGAATGGA
AACATGTACAGTACGTAGTGAAGATAATAATCATGTTGTGGAATTTGGTA
TCGGAATAGATTGTATCAGGATAGATCACGGAGAAGATGAAATACAGAGG
TAGGAATAATtctaaagttgtaaaatttatgtttagGCCAGTTTTAGGTA
AAATGATGAATAATTTTCAATGTCTTTGAACAGTTGAAGAAACTTGTCTG
TGTACATATTTATGTTTATTGTTTTGAAGCTcctttctaattttgatttt
tcctctTCTTCAGCATACCATATACTTGCTTGAAAATGGCTACACACTCA
GGAAAGACTGTTAAATTGAACATTGTTGTATCAGACTGTGGAAATACTGA
AACAATCTTGTATCGTTTAAATTCGAAAGAAGCAGCCGTTTCATTGTATA
GATCAATAACAGAACATCATTCATTTTATCGTTGTGATAGTGTAAGACCA
GCAGTGAAAGAACAAGTTGCCAGAGATTTTTTTGATACAATCTTATCATG
GTTTCATGAAGATGAccagaattatatttttgatacgGAAAGAACATGTA
GGGAAGCTTACGATCATGCTAGGAGGACACTTTATAATTTTGGATCAACA
GCTGTTGCTGATGTTGTGGCACAGCGCAAAACTCTTTCTAAGGGAACTAC
AAATGATGAGCCTGAAACATTAGAAGAGCAAGTAGATAATCTGAAAGAAG
AACTAAGATGTTTTAAGGATGCATTTCATTGCCCAGTTTGTAGAGATTCT
GTGGTTGATGTGGTATTACAATGTGGACATTTAGTTTGTTCAACTTGTGG
AGATATCTGTGAGGAGTGTCCACTCTGTCGAGTAAATATCACGACGCAAA
CAAAACTTTATTTACCAATTAACCTGTCACAGGACTCGATAGATGTACCT
ATGGAACAGGCCCCTGTGGAAGAACATCTGGAAGTAGCATGTGCAATGGA
GTAAAATTACGTACATGGATGGATCTATGCAAATGGTGGTATGGCAGGAT
ATGGATTTCAATGTTATGGAGTCGGGAAATATATTTGTTCACTGTGTGAA
TACCCTCTTGTGTTTGGAAAGCCTCaatcaaaaaggaaaattgcAATTTG
TTTTATGGAAAGTTTTCTAATTGTGCAGGGTTTATTATGTTAAATGATAC
TtgatataaaaaatcaaaaaaagtgtaTGGAAACTTATCTTTAgtgaaaa
attctttattttatttagtatgaAACAAATAACAAAGCACTTGAAGTTTG
ATtgcatttcaaatttcaactaGTTGTTTATTTGCACTGCAGTGGAAATA
TTTAACCAAGCACATGTTTCACAAGAAAAGGACTTGTATTTTATAGTTTC
CTTTACATTTTCAGAAGTAGCAGTATTGAAAAATCAGGAGTctgattgaa
gatttttttaatttttaaaaaacatgcGTTCACAAAGCATGGTATACACC
CTTTACAAGTTGTTTATTAGTACTTTATACATATTAAAATAGATGTTTGT
AATATAGTCAAAAACGTATATAGATGTAAATTCGTATCAAGTTTTGAACG
CTAAATCTCTTGCGGATTGCTGCAGACTGCTGTTAGCTCGCTTCTGTGAG
GTTTGCTGCAGCCATGGTCTGTGCTATCTACTCCTGgatttcttttgaat
aaaacaATTTGTCAACTGGTGTTTAAAGCTTGATGTGATTGAAAAAACTA
TTTAGAGAGATGTtgtaagattttttgtttttatttttaatattgaaatt
tgaaaaaaaggtatTTGAGTTTATAATTTGTTCTAATAGTATACTTTAAA
TTTATATACAAAGATTAACATAAAAAGACAGAAATTGTTCTCGAATTTCA
AGGCAAGATGTTGTTTTATCATCTCGTGTTTTTTGCTCAGCTTCAAAATT
AGATATAGTTTTTTCATACTGGTCATGGAAAGTTCGTGTCAGTTCTAAAT
GTAATTTAATAACTTTTCCGAGTGCTTTTTATGGAAAGAGAACAATTttg
agcttgattttttgtttatttatgatAGATAACATAGTCTTTTAACAATA
TTATAGGAgcttaaaaaagagaaaaggggATATTTTTATTATGATCATTT
CCGAtgttttcagatattttttttataaggtgTAATTTTTAGGAGATCTA
TTGTTAGGCAAATTTTCTGGCGTCAGATTTCTCTCCCTAAATTTGGTTTC
ATTGTCTTAATCTCAATttattcctttgtttacttgattctattttgcta
aattttgaaatatggtcCCTAGTCCCTCTAGCTCATTGCNCTCAATttat
tcctttgtttacttgattctattttgctaaattttgaaatatgttcCCTA
GTCCCTCTAGCTCATTGCAAATAAAGAACaagaaacatttgaaaaccTGA
TAGCTGAAATGTTTGAACATCACACACTCTCTCTTTGCTGGTCCacgatt
taaaagttagatatTGTCCCTGTAACTATAGATATTTTTTAGGATTACGT
CACTAGTATCTGTAGCACGTATCATTGCTCTGATCTGAACAAAGAGATAT
TTTATTCCATATtattgtgtgcaaaatttttttattttgtttaaatctta
atttaaagaaaaataaaaactcacttttatatttatttaaaat

Coding sequence (CDS) from alignment at sc0000241:133621..140063+

>TCONS_00016526 ID=TCONS_00016526|Name=TCONS_00016526|organism=Clytia hemisphaerica|type=CDS|length=7440bp|location=Sequence derived from alignment at sc0000241:133621..140063+ (Clytia hemisphaerica)
TCAAATTCTTGGAAGCTTGCCCTATCAAGAAAAGAAAGAAACTGTGCTAG
ACGAACAAAACGAGTTTGTAACATGGACGAGGGATGCGAGAAGAAAATGG
CGAACGAAGCAGTTACTTCTAAACCTCCAATTAGAGCTTGTGTTAGAGAA
TTTAGTGTTTATGTAAAGCTAAGAGATGATATTTGTTACCTGTTGAGATG
TAAGGAAGATGCTAAAGGACAAGACATCATGGATGAGaTGTGTGACAAAC
TTGGGATTATTGAAAAAGATTACTTTGGCCTTCAGTATTTCACCCGAAAT
AATGAAGCACACTGGCTCAATATGAGAAACAAAGTTATCCGGCAAGTAAA
CAAGCCCCATCTACTCTTTAGGGTCAAATTTTACGTCCAACCACATCAGC
TTCTTCAAGAATCGTCAAggaGGCAATTCTTTTTGAATGTGAAATATGAG
ATCATGAATGGAAAGTACAACTCCAGTGTTTCAAAAATGCCTCGTTTATA
TGCACTGATTGCTCAAGTTGAAGCAGGAAAATTTCGAGAGAACCATATCA
GCTATAACCCATCAAGAGCATCAAGCTGGGATGCAGATTTTAGAACAAAA
GTGATTTTAGAACATTGTAAACTCCAAGATATGACACCAGAAGTTGCAGA
ATTTTTCTGTCTCAGAGAAATTGCTGAACTTGAGGAATATGGAATGGAAA
CATGTACAGTACGTAGTGAAGATAATAATCATGTTGTGGAATTTGGTATC
GGAATAGATTGTATCAGGATAGATCACGGAGAAGATGAAATACAGAGCAT
ACCATATACTTGCTTGAAAATGGCTACACACTCAGGAAAGACTGTTAAAT
TGAACATTGTTGTATCAGACTGTGGAAATACTGAAACAATCTTGTATCGT
TTAAATTCGAAAGAAGCAGCCGTTTCATTGTATAGATCAATAACAGAACA
TCATTCATTTTATCGTTGTGATAGTGTAAGACCAGCAGTGAAAGAACAAG
TTGCCAGAGATTTTTTTGATACAATCTTATCATGGTTTCATGAAGATGAc
cagaattatatttttgatacgGAAAGAACATGTAGGGAAGCTTACGATCA
TGCTAGGAGGACACTTTATAATTTTGGATCAACAGCTGTTGCTGATGTTG
TGGCACAGCGCAAAACTCTTTCTAAGGGAACTACAAATGATGAGCCTGAA
ACATTAGAAGAGCAAGTAGATAATCTGAAAGAAGAACTAAGATGTTTTAA
GGATGCATTTCATTGCCCAGTTTGTAGAGATTCTGTGGTTGATGTGGTAT
TACAATGTGGACATTTAGTTTGTTCAACTTGTGGAGATATCTGTGAGGAG
TGTCCACTCTGTCGAGTAAATATCACGACGCAAACAAAACTTTATTTACC
AATTAACCTGTCACAGGACTCGATAGATGTACCTATGGAACAGGCCCCTG
TGGAAGAACATCTGGAAGTAGCATGTGCAATGGAGTAATCAAATTCTTGG
AAGCTTGCCCTATCAAGAAAAGAAAGAAACTGTGCTAGACGAACAAAACG
AGTTTGTAACATGGACGAGGGATGCGAGAAGAAAATGGCGAACGAAGCAG
TTACTTCTAAACCTCCAATTAGAGCTTGTGTTAGAGAATTTAGTGTTTAT
GTAAAGCTAAGAGATGATATTTGTTACCTGTTGAGATGTAAGGAAGATGC
TAAAGGACAAGACATCATGGATGAGaTGTGTGACAAACTTGGGATTATTG
AAAAAGATTACTTTGGCCTTCAGTATTTCACCCGAAATAATGAAGCACAC
TGGCTCAATATGAGAAACAAAGTTATCCGGCAAGTAAACAAGCCCCATCT
ACTCTTTAGGGTCAAATTTTACGTCCAACCACATCAGCTTCTTCAAGAAT
CGTCAAggaGGCAATTCTTTTTGAATGTGAAATATGAGATCATGAATGGA
AAGTACAACTCCAGTGTTTCAAAAATGCCTCGTTTATATGCACTGATTGC
TCAAGTTGAAGCAGGAAAATTTCGAGAGAACCATATCAGCTATAACCCAT
CAAGAGCATCAAGCTGGGATGCAGATTTTAGAACAAAAGTGATTTTAGAA
CATTGTAAACTCCAAGATATGACACCAGAAGTTGCAGAATTTTTCTGTCT
CAGAGAAATTGCTGAACTTGAGGAATATGGAATGGAAACATGTACAGTAC
GTAGTGAAGATAATAATCATGTTGTGGAATTTGGTATCGGAATAGATTGT
ATCAGGATAGATCACGGAGAAGATGAAATACAGAGCATACCATATACTTG
CTTGAAAATGGCTACACACTCAGGAAAGACTGTTAAATTGAACATTGTTG
TATCAGACTGTGGAAATACTGAAACAATCTTGTATCGTTTAAATTCGAAA
GAAGCAGCCGTTTCATTGTATAGATCAATAACAGAACATCATTCATTTTA
TCGTTGTGATAGTGTAAGACCAGCAGTGAAAGAACAAGTTGCCAGAGATT
TTTTTGATACAATCTTATCATGGTTTCATGAAGATGAccagaattatatt
tttgatacgGAAAGAACATGTAGGGAAGCTTACGATCATGCTAGGAGGAC
ACTTTATAATTTTGGATCAACAGCTGTTGCTGATGTTGTGGCACAGCGCA
AAACTCTTTCTAAGGGAACTACAAATGATGAGCCTGAAACATTAGAAGAG
CAAGTAGATAATCTGAAAGAAGAACTAAGATGTTTTAAGGATGCATTTCA
TTGCCCAGTTTGTAGAGATTCTGTGGTTGATGTGGTATTACAATGTGGAC
ATTTAGTTTGTTCAACTTGTGGAGATATCTGTGAGGAGTGTCCACTCTGT
CGAGTAAATATCACGACGCAAACAAAACTTTATTTACCAATTAACCTGTC
ACAGGACTCGATAGATGTACCTATGGAACAGGCCCCTGTGGAAGAACATC
TGGAAGTAGCATGTGCAATGGAGTAATCAAATTCTTGGAAGCTTGCCCTA
TCAAGAAAAGAAAGAAACTGTGCTAGACGAACAAAACGAGTTTGTAACAT
GGACGAGGGATGCGAGAAGAAAATGGCGAACGAAGCAGTTACTTCTAAAC
CTCCAATTAGAGCTTGTGTTAGAGAATTTAGTGTTTATGTAAAGCTAAGA
GATGATATTTGTTACCTGTTGAGATGTAAGGAAGATGCTAAAGGACAAGA
CATCATGGATGAGaTGTGTGACAAACTTGGGATTATTGAAAAAGATTACT
TTGGCCTTCAGTATTTCACCCGAAATAATGAAGCACACTGGCTCAATATG
AGAAACAAAGTTATCCGGCAAGTAAACAAGCCCCATCTACTCTTTAGGGT
CAAATTTTACGTCCAACCACATCAGCTTCTTCAAGAATCGTCAAggaGGC
AATTCTTTTTGAATGTGAAATATGAGATCATGAATGGAAAGTACAACTCC
AGTGTTTCAAAAATGCCTCGTTTATATGCACTGATTGCTCAAGTTGAAGC
AGGAAAATTTCGAGAGAACCATATCAGCTATAACCCATCAAGAGCATCAA
GCTGGGATGCAGATTTTAGAACAAAAGTGATTTTAGAACATTGTAAACTC
CAAGATATGACACCAGAAGTTGCAGAATTTTTCTGTCTCAGAGAAATTGC
TGAACTTGAGGAATATGGAATGGAAACATGTACAGTACGTAGTGAAGATA
ATAATCATGTTGTGGAATTTGGTATCGGAATAGATTGTATCAGGATAGAT
CACGGAGAAGATGAAATACAGAGCATACCATATACTTGCTTGAAAATGGC
TACACACTCAGGAAAGACTGTTAAATTGAACATTGTTGTATCAGACTGTG
GAAATACTGAAACAATCTTGTATCGTTTAAATTCGAAAGAAGCAGCCGTT
TCATTGTATAGATCAATAACAGAACATCATTCATTTTATCGTTGTGATAG
TGTAAGACCAGCAGTGAAAGAACAAGTTGCCAGAGATTTTTTTGATACAA
TCTTATCATGGTTTCATGAAGATGAccagaattatatttttgatacgGAA
AGAACATGTAGGGAAGCTTACGATCATGCTAGGAGGACACTTTATAATTT
TGGATCAACAGCTGTTGCTGATGTTGTGGCACAGCGCAAAACTCTTTCTA
AGGGAACTACAAATGATGAGCCTGAAACATTAGAAGAGCAAGTAGATAAT
CTGAAAGAAGAACTAAGATGTTTTAAGGATGCATTTCATTGCCCAGTTTG
TAGAGATTCTGTGGTTGATGTGGTATTACAATGTGGACATTTAGTTTGTT
CAACTTGTGGAGATATCTGTGAGGAGTGTCCACTCTGTCGAGTAAATATC
ACGACGCAAACAAAACTTTATTTACCAATTAACCTGTCACAGGACTCGAT
AGATGTACCTATGGAACAGGCCCCTGTGGAAGAACATCTGGAAGTAGCAT
GTGCAATGGAGTAATCAAATTCTTGGAAGCTTGCCCTATCAAGAAAAGAA
AGAAACTGTGCTAGACGAACAAAACGAGTTTGTAACATGGACGAGGGATG
CGAGAAGAAAATGGCGAACGAAGCAGTTACTTCTAAACCTCCAATTAGAG
CTTGTGTTAGAGAATTTAGTGTTTATGTAAAGCTAAGAGATGATATTTGT
TACCTGTTGAGATGTAAGGAAGATGCTAAAGGACAAGACATCATGGATGA
GaTGTGTGACAAACTTGGGATTATTGAAAAAGATTACTTTGGCCTTCAGT
ATTTCACCCGAAATAATGAAGCACACTGGCTCAATATGAGAAACAAAGTT
ATCCGGCAAGTAAACAAGCCCCATCTACTCTTTAGGGTCAAATTTTACGT
CCAACCACATCAGCTTCTTCAAGAATCGTCAAggaGGCAATTCTTTTTGA
ATGTGAAATATGAGATCATGAATGGAAAGTACAACTCCAGTGTTTCAAAA
ATGCCTCGTTTATATGCACTGATTGCTCAAGTTGAAGCAGGAAAATTTCG
AGAGAACCATATCAGCTATAACCCATCAAGAGCATCAAGCTGGGATGCAG
ATTTTAGAACAAAAGTGATTTTAGAACATTGTAAACTCCAAGATATGACA
CCAGAAGTTGCAGAATTTTTCTGTCTCAGAGAAATTGCTGAACTTGAGGA
ATATGGAATGGAAACATGTACAGTACGTAGTGAAGATAATAATCATGTTG
TGGAATTTGGTATCGGAATAGATTGTATCAGGATAGATCACGGAGAAGAT
GAAATACAGAGCATACCATATACTTGCTTGAAAATGGCTACACACTCAGG
AAAGACTGTTAAATTGAACATTGTTGTATCAGACTGTGGAAATACTGAAA
CAATCTTGTATCGTTTAAATTCGAAAGAAGCAGCCGTTTCATTGTATAGA
TCAATAACAGAACATCATTCATTTTATCGTTGTGATAGTGTAAGACCAGC
AGTGAAAGAACAAGTTGCCAGAGATTTTTTTGATACAATCTTATCATGGT
TTCATGAAGATGAccagaattatatttttgatacgGAAAGAACATGTAGG
GAAGCTTACGATCATGCTAGGAGGACACTTTATAATTTTGGATCAACAGC
TGTTGCTGATGTTGTGGCACAGCGCAAAACTCTTTCTAAGGGAACTACAA
ATGATGAGCCTGAAACATTAGAAGAGCAAGTAGATAATCTGAAAGAAGAA
CTAAGATGTTTTAAGGATGCATTTCATTGCCCAGTTTGTAGAGATTCTGT
GGTTGATGTGGTATTACAATGTGGACATTTAGTTTGTTCAACTTGTGGAG
ATATCTGTGAGGAGTGTCCACTCTGTCGAGTAAATATCACGACGCAAACA
AAACTTTATTTACCAATTAACCTGTCACAGGACTCGATAGATGTACCTAT
GGAACAGGCCCCTGTGGAAGAACATCTGGAAGTAGCATGTGCAATGGAGT
AATCAAATTCTTGGAAGCTTGCCCTATCAAGAAAAGAAAGAAACTGTGCT
AGACGAACAAAACGAGTTTGTAACATGGACGAGGGATGCGAGAAGAAAAT
GGCGAACGAAGCAGTTACTTCTAAACCTCCAATTAGAGCTTGTGTTAGAG
AATTTAGTGTTTATGTAAAGCTAAGAGATGATATTTGTTACCTGTTGAGA
TGTAAGGAAGATGCTAAAGGACAAGACATCATGGATGAGaTGTGTGACAA
ACTTGGGATTATTGAAAAAGATTACTTTGGCCTTCAGTATTTCACCCGAA
ATAATGAAGCACACTGGCTCAATATGAGAAACAAAGTTATCCGGCAAGTA
AACAAGCCCCATCTACTCTTTAGGGTCAAATTTTACGTCCAACCACATCA
GCTTCTTCAAGAATCGTCAAggaGGCAATTCTTTTTGAATGTGAAATATG
AGATCATGAATGGAAAGTACAACTCCAGTGTTTCAAAAATGCCTCGTTTA
TATGCACTGATTGCTCAAGTTGAAGCAGGAAAATTTCGAGAGAACCATAT
CAGCTATAACCCATCAAGAGCATCAAGCTGGGATGCAGATTTTAGAACAA
AAGTGATTTTAGAACATTGTAAACTCCAAGATATGACACCAGAAGTTGCA
GAATTTTTCTGTCTCAGAGAAATTGCTGAACTTGAGGAATATGGAATGGA
AACATGTACAGTACGTAGTGAAGATAATAATCATGTTGTGGAATTTGGTA
TCGGAATAGATTGTATCAGGATAGATCACGGAGAAGATGAAATACAGAGC
ATACCATATACTTGCTTGAAAATGGCTACACACTCAGGAAAGACTGTTAA
ATTGAACATTGTTGTATCAGACTGTGGAAATACTGAAACAATCTTGTATC
GTTTAAATTCGAAAGAAGCAGCCGTTTCATTGTATAGATCAATAACAGAA
CATCATTCATTTTATCGTTGTGATAGTGTAAGACCAGCAGTGAAAGAACA
AGTTGCCAGAGATTTTTTTGATACAATCTTATCATGGTTTCATGAAGATG
AccagaattatatttttgatacgGAAAGAACATGTAGGGAAGCTTACGAT
CATGCTAGGAGGACACTTTATAATTTTGGATCAACAGCTGTTGCTGATGT
TGTGGCACAGCGCAAAACTCTTTCTAAGGGAACTACAAATGATGAGCCTG
AAACATTAGAAGAGCAAGTAGATAATCTGAAAGAAGAACTAAGATGTTTT
AAGGATGCATTTCATTGCCCAGTTTGTAGAGATTCTGTGGTTGATGTGGT
ATTACAATGTGGACATTTAGTTTGTTCAACTTGTGGAGATATCTGTGAGG
AGTGTCCACTCTGTCGAGTAAATATCACGACGCAAACAAAACTTTATTTA
CCAATTAACCTGTCACAGGACTCGATAGATGTACCTATGGAACAGGCCCC
TGTGGAAGAACATCTGGAAGTAGCATGTGCAATGGAGTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_009236	XLOC_009236	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00016526-protein	TCONS_00016526-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000241	supercontig	sc0000241:133621..140063 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.57703	7.89794	0.0972251	6.13276	28.4299	29.5881	26.8693	50.4932	20.9998	56.7919	65.1006	37.3145	35.0625	31.0422	20.3926	26.1156	18.6862	14.5624	25.9775	33.0243	40.6138	51.1683	20.0857	35.4559	43.9973	51.5054	250.217	225.359	33.6673	28.3354

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR018980	FERM_PH-like_C
IPR019749	Band_41_domain
IPR001841	Znf_RING
IPR014352	FERM/acyl-CoA-bd_prot_3-hlx
IPR019748	FERM_central
IPR018979	FERM_N
IPR011993	PH_dom-like
IPR000299	FERM_domain
IPR029071	Ubiquitin-rel_dom

Vocabulary: **Cellular Component**
Term	Definition
GO:0005856	cytoskeleton

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005856	cytoskeleton

Blast

[Close]

BLAST of TCONS_00016526 vs. Swiss-Prot (Human)
Match: MYLIP (E3 ubiquitin-protein ligase MYLIP OS=Homo sapiens GN=MYLIP PE=1 SV=2)

HSP 1 Score: 249.21 bits (635), Expect = 1.589e-72
Identity = 155/446 (34.75%), Postives = 242/446 (54.26%), Query Frame = 2

Query:  161 YVKLRDDICYLLRCKEDAKGQDIMDEMCDKLGIIEKDYFGLQYFTRNNEAHWLNMRNKVIRQVN--KPHLL-FRVKFYVQPHQLLQESSRRQFFLNVKYEIMNGKYNSSVSKMPRLYALIAQVEAGKFRENHISYNPSR--ASSWDADFRTKVILEHCKLQDMTPEVAEFFCLREIAELEEYGMETCTVRSEDNNHVVEFGIGIDCIRIDHGE-DEIQSIPYTCLKMATHSGKTVKLNIVVSDCGNTETILYRLNSKEAAVSLYRSITEHHSFYRCDSVRPAVKEQVARDFFDTILSWFHEDDQN----YIFDTERTCREAYDHARRTLYNFGSTAVADVVAQR---------KTLSKGTTNDEPETLE-EQVDNLKEELRCFKDAFHCPV-CRDSVVDVVLQCGHLV-CSTCGDICEECPLCRVNITTQTKLYLPINLSQDSIDV 1432
            YV   D +   +  +  A G+D ++++C +LGIIE DYFGLQ+     E+ WLN+RN++ +Q++   P+ L  RVKF+V+PH +LQE +R  FFL++K  ++ G    S  +   L AL+AQ + G + +N   YN     A    +     ++ +H +L+  +   AE+  L+ ++ +E YG+E  +VR  +   ++  G+G + I I   +   I  I Y  ++MAT SGK V L  V  + GN+  +L+++ S  AA  LYR+ITE H+FYRCD+V  AV  Q +RD    + S F  ++ N    Y+FD +RT +E YDHARR LYN G   V D+V++          K+          E L  +Q   L+E+LR  K+A  C V C + +      CGH V C +C    + CP+CR  +     +YLP + S  ++ V
Sbjct:    4 YVTRPDAVLMEVEVEAKANGEDCLNQVCRRLGIIEVDYFGLQFTGSKGESLWLNLRNRISQQMDGLAPYRLKLRVKFFVEPHLILQEQTRHIFFLHIKEALLAGHLLCSPEQAVELSALLAQTKFGDYNQNTAKYNYEELCAKELSSATLNSIVAKHKELEGTSQASAEYQVLQIVSAMENYGIEWHSVRDSEGQKLL-IGVGPEGISICKDDFSPINRIAYPVVQMATQSGKNVYLT-VTKESGNSIVLLFKMISTRAASGLYRAITETHAFYRCDTVTSAVMMQYSRDLKGHLASLFLNENINLGKKYVFDIKRTSKEVYDHARRALYNAG---VVDLVSRNNQSPSHSPLKSSESSMNCSSCEGLSCQQTRVLQEKLRKLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQHVYLPTHTSLLNLTV 444

The following BLAST results are available for this feature:

BLAST of TCONS_00016526 vs. Swiss-Prot (Human)

BLAST of TCONS_00016526 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MYLIP	1.589e-72	34.75	E3 ubiquitin-protein ligase MYLIP OS=Homo sapiens ...	[more]

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TCONS_00016526 (transcript) - C. hemisphaerica