TCONS_00016526-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00016526-protein
Unique NameTCONS_00016526-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length495

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00016526-protein ID=TCONS_00016526-protein|Name=TCONS_00016526-protein|organism=Clytia hemisphaerica|type=polypeptide|length=495bp
SNSWKLALSRKERNCARRTKRVCNMDEGCEKKMANEAVTSKPPIRACVRE
FSVYVKLRDDICYLLRCKEDAKGQDIMDEMCDKLGIIEKDYFGLQYFTRN
NEAHWLNMRNKVIRQVNKPHLLFRVKFYVQPHQLLQESSRRQFFLNVKYE
IMNGKYNSSVSKMPRLYALIAQVEAGKFRENHISYNPSRASSWDADFRTK
VILEHCKLQDMTPEVAEFFCLREIAELEEYGMETCTVRSEDNNHVVEFGI
GIDCIRIDHGEDEIQSIPYTCLKMATHSGKTVKLNIVVSDCGNTETILYR
LNSKEAAVSLYRSITEHHSFYRCDSVRPAVKEQVARDFFDTILSWFHEDD
QNYIFDTERTCREAYDHARRTLYNFGSTAVADVVAQRKTLSKGTTNDEPE
TLEEQVDNLKEELRCFKDAFHCPVCRDSVVDVVLQCGHLVCSTCGDICEE
CPLCRVNITTQTKLYLPINLSQDSIDVPMEQAPVEEHLEVACAME
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009236XLOC_009236Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00016526TCONS_00016526Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018980FERM_PH-like_C
IPR019749Band_41_domain
IPR001841Znf_RING
IPR014352FERM/acyl-CoA-bd_prot_3-hlx
IPR019748FERM_central
IPR018979FERM_N
IPR011993PH_dom-like
IPR000299FERM_domain
IPR029071Ubiquitin-rel_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005856cytoskeleton
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005856 cytoskeleton
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018980FERM, C-terminal PH-like domainSMARTSM01196FERM_C_3coord: 241..329
e-value: 4.2E-6
score: 36.3
IPR019749Band 4.1 domainSMARTSM00295B41_5coord: 47..235
e-value: 8.3E-18
score: 75.2
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 422..454
e-value: 0.0084
score: 25.3
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 422..455
score: 11.117
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 422..458
e-value: 0.00173145
score: 35.4992
IPR014352FERM/acyl-CoA-binding protein, 3-helical bundleGENE3D1.20.80.10coord: 129..227
e-value: 2.2E-11
score: 43.6
IPR019748FERM central domainPFAMPF00373FERM_Mcoord: 132..233
e-value: 5.7E-6
score: 26.6
IPR019748FERM central domainCDDcd14473FERM_B-lobecoord: 139..227
e-value: 3.10843E-8
score: 50.3226
IPR019748FERM central domainSUPERFAMILY47031Second domain of FERMcoord: 130..230
IPR018979FERM, N-terminalPFAMPF09379FERM_Ncoord: 62..116
e-value: 1.0E-10
score: 41.3
IPR011993PH domain-likeGENE3D2.30.29.30coord: 230..320
e-value: 1.6E-7
score: 31.2
IPR011993PH domain-likeSUPERFAMILY50729PH domain-likecoord: 228..347
NoneNo IPR availableGENE3D3.10.20.90coord: 50..128
e-value: 4.4E-19
score: 67.7
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 421..459
e-value: 2.7E-6
score: 27.0
NoneNo IPR availableGENE3D1.10.1170.10coord: 321..467
e-value: 1.1E-10
score: 41.5
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 401..463
IPR000299FERM domainPROSITEPS50057FERM_3coord: 51..325
score: 38.665
IPR029071Ubiquitin-related domainSUPERFAMILY54236Ubiquitin-likecoord: 51..129

Blast
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BLAST of TCONS_00016526-protein vs. Swiss-Prot (Human)
Match: MYLIP (E3 ubiquitin-protein ligase MYLIP OS=Homo sapiens GN=MYLIP PE=1 SV=2)

HSP 1 Score: 249.595 bits (636), Expect = 1.470e-77
Identity = 155/446 (34.75%), Postives = 242/446 (54.26%), Query Frame = 0 
Query:   54 YVKLRDDICYLLRCKEDAKGQDIMDEMCDKLGIIEKDYFGLQYFTRNNEAHWLNMRNKVIRQVN--KPHLL-FRVKFYVQPHQLLQESSRRQFFLNVKYEIMNGKYNSSVSKMPRLYALIAQVEAGKFRENHISYNPSR--ASSWDADFRTKVILEHCKLQDMTPEVAEFFCLREIAELEEYGMETCTVRSEDNNHVVEFGIGIDCIRIDHGE-DEIQSIPYTCLKMATHSGKTVKLNIVVSDCGNTETILYRLNSKEAAVSLYRSITEHHSFYRCDSVRPAVKEQVARDFFDTILSWFHEDDQN----YIFDTERTCREAYDHARRTLYNFGSTAVADVVAQR---------KTLSKGTTNDEPETLE-EQVDNLKEELRCFKDAFHCPV-CRDSVVDVVLQCGHLV-CSTCGDICEECPLCRVNITTQTKLYLPINLSQDSIDV 477
            YV   D +   +  +  A G+D ++++C +LGIIE DYFGLQ+     E+ WLN+RN++ +Q++   P+ L  RVKF+V+PH +LQE +R  FFL++K  ++ G    S  +   L AL+AQ + G + +N   YN     A    +     ++ +H +L+  +   AE+  L+ ++ +E YG+E  +VR  +   ++  G+G + I I   +   I  I Y  ++MAT SGK V L  V  + GN+  +L+++ S  AA  LYR+ITE H+FYRCD+V  AV  Q +RD    + S F  ++ N    Y+FD +RT +E YDHARR LYN G   V D+V++          K+          E L  +Q   L+E+LR  K+A  C V C + +      CGH V C +C    + CP+CR  +     +YLP + S  ++ V
Sbjct:    4 YVTRPDAVLMEVEVEAKANGEDCLNQVCRRLGIIEVDYFGLQFTGSKGESLWLNLRNRISQQMDGLAPYRLKLRVKFFVEPHLILQEQTRHIFFLHIKEALLAGHLLCSPEQAVELSALLAQTKFGDYNQNTAKYNYEELCAKELSSATLNSIVAKHKELEGTSQASAEYQVLQIVSAMENYGIEWHSVRDSEGQKLL-IGVGPEGISICKDDFSPINRIAYPVVQMATQSGKNVYLT-VTKESGNSIVLLFKMISTRAASGLYRAITETHAFYRCDTVTSAVMMQYSRDLKGHLASLFLNENINLGKKYVFDIKRTSKEVYDHARRALYNAG---VVDLVSRNNQSPSHSPLKSSESSMNCSSCEGLSCQQTRVLQEKLRKLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQHVYLPTHTSLLNLTV 444
The following BLAST results are available for this feature:
BLAST of TCONS_00016526-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MYLIP1.470e-7734.75E3 ubiquitin-protein ligase MYLIP OS=Homo sapiens ... [more]
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