TCONS_00016480 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016480
Unique NameTCONS_00016480
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2124

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016480 ID=TCONS_00016480|Name=TCONS_00016480|organism=Clytia hemisphaerica|type=transcript|length=2124bp
AGGAGCAATCGTTCTGCAACAACTTGGTGTTTTGCCCATGCTGACTTTGA
CTTTCGATTTTTCGAGGAAACGACACAATTTGCAAGATGCTTTGACCGTC
TTTGCAACTTCGCGTCCTTCAATGATGAATGCCTTCTGGGATGCATAGCA
TAACGTAGCTTCGATGCCGGAATGTTTGACGACTTTGTTGTGCCAGTGAA
CGTCACTCAGGATGGCGTAGGCGATGGGTGAATGTTTGCTGATGATTGGA
ACGCAGAAGGTCGTTTGATGTAGATCTTTCATCACTTTCGTCATCGGAGT
GATCACGTTGATTTCGTCTGTTGGCATGATACGACCAGTATACGTTAGGA
TGCCGTCAATCTCTGTTGATATGCATTTGTACTTCTCTTTACTGACGAAC
TGTTTCACCTCTTCAGTACCCTTGCGCCAGAAGTACGTTTCGGCTTGCTT
GAGTTGATCGTCAGTCAGTCGTCCATTTGATTTGAATTCGTAGGTTGGTG
CAGATGATTGTTTACGTAGAGCTACTAAAGATCTAAGTAGTTGTAGAAAT
GGCTTGAGCAAGTATTCTGATGACCTTTTGAAAACGAAACTTATTTGGGT
CAATCAGATATTTGGAGCATGAATAGTGATCTCGAACTTCGGACACAATC
TTCATTGATGCCAAGTAAACTTCACGACTGCCTTGAATTGCCTCATTCTT
GATTTCACATAAGTCAGTAGAATTGAAATTAATTTGACTTACAGTTTTGG
TTGGGAAGGTTGATTTGTCACCCCTGAGCCAGGAGTGCCCATTGATCCAT
GTTGATTTGCTgctgatatcgtctattgttgcACCTTTACGAGCTGCAAT
ATCTGCGAGCATGTTGTTTGTGTCGATGTGTTGCCAATCTTCATGAGTTG
TGTGTCGAATGATTTCGATTATTCGATTTCGAACGAATGGCTTGAGGGAG
ATTTCATCATTACTGATCCAGTGTAGAACGATGGTGCTGTCTGTCAATTT
GATTGATCCGTTGTGTTTGGACTTCAATGCACGTTTGACGACTTCGGAAG
TATGAGTGTTGAGGACAGCTGCTTCGAGTTCAGCTCGAGGTTGAGTTGAT
GAtgacaaaatctttgatcgagcAAATACGAGTTGACACGAATATTCACC
GTTTAAATGTAGTATTCTGGCATAGATAGCAACGGCTGCCATCTCTTTGG
TTGCATCACCGAAGTCGATGGTCTCAATCATTAAGTTGGCTGCATCATCA
GGCACAATGGTTCTGCAGTTCTGGCGTATCGAATTGATTTTATCTCTTGA
ATCATTTCGAAGTTGGATTCCCATATGGATCTAAGGTTGTCCGGTATGGC
ATCGTCCCACTTCAAACCACGTTGTACGATGTTGTGGAGATCAATCCTGA
GTGATGCAGTGATTGGTGTGATCTTCCCAGTGATGTCGAATAGCTCGTGC
ACCTTGGATACGCAATGACGCCTTGTGAGGGTGGATGGAACGATACCAAC
TTTCTCATCTGGTTTCTTTCCTCGTCGTTTCTTGGCGAAGTTTAGTTCGG
ATACGTCGATCGATACTTACGGTTACGTCAGTATGAAATGCGACTTTGTG
ACAGTACCAGCGAATGAGGATTTCAACAAGTTTATTCATACCGTTGGTGC
CCTTTGCGAGAATTGAGTTAAGACTGTAGCCGTTGTTTGTTGGTTGTGAT
GCGTCGAAAACGACTCGGCAAGGTGTTGTGACGGAGCTTGCTTTCCAAAC
TGCCCTCCATggtataaagttttgaattgggCTGTGTGCCAATTGGTTTT
GAATGTTGGGATGAAGGTTCCTGATGAAGTCGACGTGGCCAAGTTTTTGG
AGCTTAGCCTCAGATTCGATGACGTCACGTTTGTCATTCGGGTAAGAGGA
TAACTTCTTGACTTGTTGGTCGTACACCTTCTTGGCTTTCATTCGATTTG
GATGTAGTCTGATATTGGGATCTTGTGTGAAGGGTAGAGTTGCCACAGTG
ATCTTCTCGTTTGGTATGACTTCGATTCAGCCCTCGAAtttcaggtcggc
attcggcagTGCCGACCTAAAAGCCGACCAAAGAGTGCGTATGGTCGGCA
GTTCATTGCCGACCATATTCATTG
Run BLAST on NCBI

transcript from alignment at sc0000240:279045..281248+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016480 ID=TCONS_00016480|Name=TCONS_00016480|organism=Clytia hemisphaerica|type=transcript|length=2204bp|location=Sequence derived from alignment at sc0000240:279045..281248+ (Clytia hemisphaerica)
AGGAGCAATCGTTCTGCAACAACTTGGTGTTTTGCCCATGCTGACTTTGA
CTTTCGATTTTTCGAGGAAACGACACAATTTGCAAGATGCTTTGACCGTC
TTTGCAACTTCGCGTCCTTCAATGATGAATGCCTTCTGGGATGCATAGCA
TAACGTAGCTTCGATGCCGGAATGTTTGACGACTTTGTTGTGCCAGTGAA
CGTCACTCAGGATGGCGTAGGCGATGGGTGAATGTTTGCTGATGATTGGA
ACGCAGAAGGTCGTTTGATGTAGATCTTTCATCACTTTCGTCATCGGAGT
GATCACGTTGATTTCGTCTGTTGGCATGATACGACCAGTATACGTTAGGA
TGCCGTCAATCTCTGTTGATATGCATTTGTACTTCTCTTTACTGACGAAC
TGTTTCACCTCTTCAGTACCCTTGCGCCAGAAGTACGTTTCGGCTTGCTT
GAGTTGATCGTCAGTCAGTCGTCCATTTGATTTGAATTCGTAGGTTGGTG
CAGATGATTGTTTACGTAGAGCTACTAAAGATCTAAGTAGTTGTAGAAAT
GGCTTGAGCAAGTATTCTGATGACCTTTTGAAAACGAAACTTATTTGGGT
CAATCAGATATTTGGAGCATGAATAGTGATCTCGAACTTCGGACACAATC
TTCATTGATGCCAAGTAAACTTCACGACTGCCTTGAATTGCCTCATTCTT
GATTTCACATAAGTCAGTAGAATTGAAATTAATTTGACTTACAGTTTTGG
TTGGGAAGGTTGATTTGTCACCCCTGAGCCAGGAGTGCCCATTGATCCAT
GTTGATTTGCTgctgatatcgtctattgttgcACCTTTACGAGCTGCAAT
ATCTGCGAGCATGTTGTTTGTGTCGATGTGTTGCCAATCTTCATGAGTTG
TGTGTCGAATGATTTCGATTATTCGATTTCGAACGAATGGCTTGAGGGAG
ATTTCATCATTACTGATCCAGTGTAGAACGATGGTGCTGTCTGTCAATTT
GATTGATCCGTTGTGTTTGGACTTCAATGCACGTTTGACGACTTCGGAAG
TATGAGTGTTGAGGACAGCTGCTTCGAGTTCAGCTCGAGGTTGAGTTGAT
GAtgacaaaatctttgatcgagcAAATACGAGTTGACACGAATATTCACC
GTTTAAATGTAGTATTCTGGCATAGATAGCAACGGCTGCCATCTCTTTGG
TTGCATCACCGAAGTCGATGGTCTCAATCATTAAGTTGGCTGCATCATCA
GGCACAATGGTTCTGCAGTTCTGGCGTATCGAATTGATTTTATCTCTTGA
ATCATTTCGAAGTTGGATTCCCATATGGATCTAAGGTTGTCCGGTATGGC
ATCGTCCCACTTCAAACCACGTTGTACGATGTTGTGGAGATCAATCCTGA
GTGATGCAGTGATTGGTGTGATCTTCCCAGTGATGTCGAATAGCTCGTGC
ACCTTGGATACGCAATGACGCCTTGTGAGGGTGGATGGAACGATACCAAC
TTTCTCATCTGGTTTCTTTCCTCGTCGTTTCTTGGCGAAGTTTAGTTCGG
ATACGTCGATCGATACTTACGGTTACGTCAGTATGAAATGCGACTTTGTG
ACAGTACCAGCGAATGAGGATTTCAACAAGTTTATTCATACCGTTGGTGC
CCTTTGCGAGAATTGAGTTAAGACTGTAGCCGTTGTTTGTTGGTTGTGAT
GCGTCGAAAACGACTCGGCAAGGTGTTGTGACGGAGCTTGCTTTCCAAAC
TGCCCTCCATggtataaagttttgaattgggCTGTGTGCCAATTGGTTTT
GAATGTTGGGATGAAGGTTCCTGACGAAGTCGACGTGGCCAAGTTTTTGG
AGCTTAGCCTCAGATTCGATGACGTCACGTTTGTCATTNGATGAAGGTTC
CTGATGAAGTCGACGTGGCCAAGTTTTTGGAGCTTAGCCTCAGATTCGAT
GACGTCACGTTTGTCATTCGGGTAAGAGGATAACTTCTTGACTTGTTGGT
CGTACACCTTCTTGGCTTTCATTCGATTTGGATGTAGTCTGATATTGGGA
TCTTGTGTGAAGGGTAGAGTTGCCACAGTGATCTTCTCGTTTGGTATGAC
TTCGATTCAGCCCTCGAAtttcaggtcggcattcggcagTGCCGACCTAA
AAGCCGACCAAAGAGTGCGTATGGTCGGCAGTTCATTGCCGACCATATTC
ATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009203XLOC_009203Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016480-exon-sc0000240-1491911889:279045..280860TCONS_00016480-exon-sc0000240-1491911889:279045..280860Clytia hemisphaericaexon
TCONS_00016480-exon-sc0000240-1510915933:279045..280860TCONS_00016480-exon-sc0000240-1510915933:279045..280860Clytia hemisphaericaexon
TCONS_00016480-exon-sc0000240-1575043694:279045..280860TCONS_00016480-exon-sc0000240-1575043694:279045..280860Clytia hemisphaericaexon
TCONS_00016480-exon-sc0000240-1491911889:280941..281248TCONS_00016480-exon-sc0000240-1491911889:280941..281248Clytia hemisphaericaexon
TCONS_00016480-exon-sc0000240-1510915933:280941..281248TCONS_00016480-exon-sc0000240-1510915933:280941..281248Clytia hemisphaericaexon
TCONS_00016480-exon-sc0000240-1575043694:280941..281248TCONS_00016480-exon-sc0000240-1575043694:280941..281248Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000240supercontigsc0000240:279045..281248 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.40833	3.95248	2.29846	1.22461	2.32399	2.00926	1.48126	2.1531	0.606901	2.7875	0.998395	1.32498	0.704249	1.10919	0.431923	0.29732	0.278425	0.48156	0.53693	0.49876	0.294828	0.555112	0.553197	0.549246	1.16841	1.10267	0.38058	0.215068	0.814756	0.724723
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008042Retrotrans_Pao
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016480 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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