TCONS_00016437 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016437
Unique NameTCONS_00016437
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1611

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016437 ID=TCONS_00016437|Name=TCONS_00016437|organism=Clytia hemisphaerica|type=transcript|length=1611bp
aaaaaaaggcaTAGTTAAATGCTGAAATAGAGTTAAAGCTTGAAATAAGT
ATATATAATTTGTAGAAGCATGGTAAAATTTTACTGATAAGTTAATCTAa
cacaaaaacagaaaattatCAAGAAAATCAAAGGAAGCCCGATAGCAATC
CGatattttaaatcaaaacacaGGCTTTTGGCTCGTAGACGTGTTCCAca
gcacaagaaaaaaaaaattaaaatggcgaCCGAAGAACGAAATATCGAAA
ACATTGACCTTGCTGAAGAATCAAAGGATATCAATGGTGTCCCTACAGAT
CCATTGACAGAAGAAAGGAGAGAAGAAATTATTGTTGAAGTAACTAAGTT
AGAAGATGAAATCAAGACGTTGAGACAAGCACTTTTACGTAAAGAAACAC
AACTCAATAACTTAAGAACAGAGCTAGGTGAAACAAGATGGGCAAGACTT
CAAAACTCTCAGGCcgTACAAAAATCAAAGCAAGCAATTTCAGATGCTGG
AAACAAAACATCACAGGCATTGAAAAATGTTGGAAATATAACTGCTAGCA
AATGGCAAGAAATTAAAGAATCACAACGCTACCAAAATGTATCTGAACGA
TTTTGGAGTACAACTGGGGCAGTTAAGGCTAAACTAACAGGAACTGGCCA
AACTCAATCGCAAGAGGAGACGAACAAGGAGCCAATTGTTGATACTCCAA
CAAACACAAGcATATAAAGTTCTTTCGGTCGATCTCTGGTATAATGTGAT
CATTGAGCAATGAAAGGTAtcaacaaaaaacgtaaaatgatattttaaat
tTCACATAAATGTTTTCATCGTATTTGttcaaataaaatatatatttttt
acgaGTTCATTTTGACGGCTCATGGCATGGCTGCTAGTTCTTTTTGTAGA
TTCAATCTATTATCTAGCATCTCTGAGTGACTTGCAAGGCTTCTTTCAAG
gtcttaaaagttttaaaaatttttgtaaagatACCTTAAAGCGGCCTTTA
TTTTAGTTTCCAATCATAAAGCACATTTTGATGCTTTCTGTCaatttatt
caatatttttcaggGGAAGTGTTTTGCGTTATCAACACTTGTcttttttt
cggatttttataaTAATGATACGTTTAGAtaaattttaagataaaatgat
atttttgtaaTATTTCTTCAATCAATAATCATTTTCAGAATTCctgatat
tttattttcatttttcctttgtttgTTGGGTatttaatttgtattttttg
tttatttgatttctCAGTTCCTAGTTCCCAAActctttgttttctttcat
tAGTGTTTACCGTTTTCAGTATGAGTCAAAGGTTttttaacaatagaatt
ttGCTGACTTTCGAAAGACCTTTTCCTTGCGACTGGGTTAAATTTATTGA
TGGAAATTTCTCTCTTTCCAGataaatttttggaaagttttcgtaaaaat
attttcttaattctttttcctgaacattcgaatgtttatcgtttagtttt
ttaatcaattatttCTTACGATAGTATGTAATATTTTTGGTATGGAgtat
ttcttatttttagtGTTTCAACGGTAATTTATTggataagaaaaaaaatg
ttaaacgaCAA
Run BLAST on NCBI

transcript from alignment at sc0000237:390918..397776-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016437 ID=TCONS_00016437|Name=TCONS_00016437|organism=Clytia hemisphaerica|type=transcript|length=6859bp|location=Sequence derived from alignment at sc0000237:390918..397776- (Clytia hemisphaerica)
AAAAAAAGGCATAGTTAAATGCTGAAATAGAGTTAAAGCTTGAAATAAGT
ATATATAATTTGTAGAAGCATGGTAAAATTTTACTGATAAGTTAATCTAA
CACAAAAACAGAAAATTATCAAGAAAATCAAAGGAAGCCCGATAGCAATC
CGATATTTTAAATCAAAACACAGGCTTTTGGCTCGTAGACGTGTTCCACA
GCACAAGAAAAAAAAAATTAAAATGGCGACCGAAGAACGAAATATCGAAA
ACATTGACCTTGCTGAAGAATCAAAGGATATCAATGGTGTCCCTACAGAT
CCATTGACAGAAGAAAGGAGAGAAGAAATTATTGTTGAAGTAACTAAGGT
GAAAATTTCGAATATATTTATCAATCAATAATTCCTGTTTGCAGGAATTT
GCAACTTTTTTGAAAGTTGAAAGTGAACTTTAAAAATTTAATGCCGGGAA
ACAAAAGTAAGTTAAATTGGTGCAATAAAGTAGTGTCGATAAAACCATTT
AACCCAGGACATTTTATAATACTTTTCGCCACTGGCCAATAATACCAGAC
AGTTGGATGCGTCGCCAGGCTAGAAATGGTGCACAGTACACCGAATATAT
TCGNTCGGAGATTTTCAAAAATTATTGATAATTCCGGTTTTTCCCGATCG
GGCTACGTTTTCTATCAAATTACTGATAAATAAAAAAAAAGGCATAGTTA
AATGCTGAAATAGAGTTAAAGCTTGAAATAAGTATATATAATTTGTAGAA
TCATGGTAAAATTTTACTGATAAGTTAATCTAACACAAAAACAGAAAATT
ATCAAGAAAATCAAAGGAAGCCCGATAGCAATCCGATATTTTAAATCAAA
ACACAGGCTTTTGGCTCGTAGACGTGTTCCACAGCACAAGAAAAAAAAAA
TTAAAATGGCGACCGAAGAACGAAATATCGAAAACATTGACCTTGCTGAA
GAATCAAAGGATATCAATGGTGTCCCTACAGATCCATTGACAGAAGAAAG
GAGAGAAGAAATTATTGTTGAAGTAACTAAGGTGAAAATTTCGAATATAT
TTATCAATCAATAATTCCTGTTTGCAGGAATTTGCAACTTTTTTGAAAGT
TGAAAGTGAACTTTAAAAATTTAATGCCGGGAAACAAAAGTAAGTTAAAT
TGGTGCAATAAAGTAGTGTCGATAAAACCATTTAACCCAGGACATTTTAT
AATACTTTTCGCCACTGGCCAATAATACCAGACAGTTGGATGCGTCGCCA
GGCTAGAAATGGTGCACAGTACACCGAATATATTCGNAGTAGTGTCGATA
AAACCATTTAACCCAGGACATTTTATAATACTTTTCGCCACTGGCCAATA
ATACCAGACAGTTGGATGCGTCGCCAGGCTAGAAATGGTATGGTGGCACA
GTACACACACCGAATATATTCGGAGTGAGGCAGTAATTACTTTTGGCATA
TTGACATCATGACGCCAGGTTTAAGCCTCTCCCTCAACCGCCATATAAGG
ACGTAGAGTGTAAATATAATTATTTGAGCAACTTTTAGGGGCGAGAAAAT
CAAATATTCTTGTGCCAAACCCTGGACCAGTTTAGGGGTTTTACAGCGCC
CCACCCCCCCCCCCNGACCACCATATAAGGACGTAGAGTGTAAATATAAT
TATTTGAGCAACTTTTTTTAGGGGCGAGAAAATCAAATATCCTAGGGCCA
AGCCCTGGACCCGTTTAGGGGTTTTACAGCGCCCCACCCCCCCCTTTCAT
TTTGATTATCAACCACTAACAGTCTTTTCCCGTTACGAGTTACTTTGAAT
ATGGATGCCGCCCCTAAAACTGGTAAAATTAGCAAATTTTAGCTATTTTT
GTAATTCTTTTAATTTTTTGGATGACTTTACTGAAAAAGTCTGACAATTT
TTATAATTTGAAAAAAATTTCTGTTGGAAAGTTGTTTGTTGCAAACAAAA
AATTCTTGAAATTTTTTTTCAATATAAAAAAGACTTTAATTCTAAGGGCA
AAACATTAATTTTTGCACTAAGTGAATTAAATGTGTCACAGAAATAATCA
TTTTTTAGCTTTTTTTGTAAAATAAGTCCAAAAAGCAACCAAAAATAGGT
GGTCTCCATGACAAATTGTCCCAAAAATTTTTACTACTAGGGTAGTAAAA
TACCTCTTCCAAGAGTCTGGGTGGGATGTAAAAATTCGTAAAAATCCTTT
TACCGCTGTCTGAGATTTTACTACCGACCCCCCCTGCCCCCAGCGGTTTG
CGTAAATGCGTGAAAATTAAAAAAAAATTGCGTGAATGCGTGAATTGGAA
AGCTTTGCGTGAAAAAAAATTGCGTGAAATGTTGAAAAACATTGTGTGAA
TGCGTGAATTTGGGAAAAAAAATTGCATGATTGTGTGAAGTGAAGGTTGA
CTGGAGGGCCTCCCTGACCGACACACCTTGTCTAATCTCCTCATACAGTA
GCAACTATCTGGTCTACAAATTAGTTAAAGTGATTGTTTTTTCAAACAGC
TTACTCAGCAGCTTTTTTCAATAAACATTTACCGCCAATGGGCTCTAACT
TGGGACTATCTGACAAAACATGGGACAGCAATTCGGCCACCATTTCACCA
AACCTCCAAAGTCATTTAATTAACATAACCATGAATCATAGATAGCAAAT
GATGTGAATACGCTACTCTCATCAGGCTTTTACACCACAAAAGGAACAAA
TCTTTGCAACGAGAAACGCATAAATGCGATTGCGTGCATTCGCACAAGCG
TCCAAACACAGATATAAAAAAGTCCGTTCCACAGTGGAAAATTGTGAGAT
CTACTGTTATCAAGACTCTGTAACTTTGACATGCCAATCAATTGCGCACA
CTGGAAAAAAGTCTATAGAGAAAAACAACAAAAAACAAANTAACTTTGAC
ATGCCAATCAATTGCGCACACTGGAAAAAAGTCTATAGAGGAAAACAACA
AAAAACAAAAACAAGAATTAGCGTCAAGATGTGAACAATGTGTGTGTGAT
TAAATTGTTAAATTTACTTCTTCAAATTATATAATTTTAAAATGCTTTAA
AGATACATTTGGTTGTGATTATGGGGTGGTGAAAGTTTGATTGATAAACT
TGATTGAAGTATCAGAACTAACTTGTTTTCAAAGAGATTTTCAAAACTTA
TCTAAAAACAAGATCTAAATTCAAGAGAACAGATCGCATAATTGCAAGAG
ACAAGGTATGTTGGTATTACACCTACCTGGGCTTTGAAGCATGATTTACA
TGAGAATAATAATATAAAGCTGAACAGGTTGGCAGTGCCAATCTTAAAGC
CAATCTAAAATGGTCAAAAACCAATCTTATTTTGACCGGCATGATTTAAA
TTGTACTTCGCCTAACTACTGTACTTAGATGGACATAACTTCATTTGTCA
TCATTTCATATTTTAGTTAGAAGATGAAATCAAGACGTTGAGACAAGCAC
TTTTACGTAAAGAAACACAACTCAATAACTTAAGAACAGAGCTAGGTGAA
ACAAGATGGGCAAGACTTCAAAACTCTCAGGCGTAAGAAATGAACAAGTT
GATATTTTTCCCTCTAAGAAATGTGCTAAAATATTGCACAAATAAGATTT
TTTCAACTTTCAACTTATCCATCTGCAGACATATGGGTTTAGTAAACCAA
CCATTAGAATCCAGCCCAGTGAGGCTTGAGTAGAGATTTTTTATAGTCTC
TGATTTAAAATTTCATTTTTCATTTTTCAGCGTACAAAAATCAAAGCAAG
CAATTTCAGATGCTGGAAACAAAACATCACAGGCATTGAAAAATGTTGGA
AATATAACTGCTAGCAAATGGCAAGAAATTAAGTAAGATTAATTTAACTC
AGTACTTGATATACCCAACCCATTTGAAATTGTATTGTTGAACCTCAAAA
GGCATATTTTGATTGTAACTAGGTCAAGAGCCTAACTCACTTCTGTTACC
TTTGATAGCTGATGTTTTGAATGACGATTCAATGATAATCTTAGATCTGT
TTAGTGAGGTTTTTACTTTTCTGATGTTAATGGTTTTTTTTATTTAATTC
AGAGAATCACAACGCTACCAAAATGTATCTGAACGATTTTGGAGTACAAC
TGGGGCAGTTAAGGTATGAATTCTATTACTATGCAATCAAATAATCATTG
AAAATTCTTTCTTGTGGTAGGTTTTTCATGAGAATTGAATATTTTAGAAA
CTAACAAAGTCATCTTAAAACAACATTCCATGCTTAAAAGGCTATATTAA
AAGACAAAAAACCTCTTAAACTTTATTATGCCTTTATTTATTTTTGTTTA
GATGAAATTTTTCGGAATGCCTTTAAGACAATCGATAACGGGAGTGCCAG
CTGGAAGTAGCAGTTTATAACCAATGAGTCAATTGACATTAAAATATAAA
TTTTTGTTTAAAAAGTTATCTGTTGAATTTTAAGAAAATTTCATCTTAAA
ATTTCATTAAACACTTTTCATTTCATTAAAGCACTTTAAAAACACTTTCC
TTAGAGCATTCTTTGTGTTTTGTTTTATTTTTTTTTTCTTAGGCGAGAAT
TTGATTTGTTGTTATTCAGGCAAATCGCTTGTCAAGTACCATTAATGTTT
TTGAAAGTTATTAAGTTAACCTACATTTTAAACTAAAAATATAATTGAAC
TTTGTAGTTTTATGCTTGTCGAAGCTGTATAATGAATGTTCAGTTTTATT
TCAAATATTTATTTGGTAGGAGTAACTGTTAAAGTGGAAATTGGATATTA
TTAAGGGTTAGGTTGTTTGGTCTGTAGAACAATAAATTAAATAAGTCTCG
CTTTTAGTGTATATTTTGAATTTGTTGATATATAATGTATAAAATTTAAC
TGCTAAATATTTTTCCAAAATAACCTGCACCTTTTTGAATAAGTTTATTG
CACAAACAAAAAACTCTTAAATTAATATGAGGAAGCAAACGTTCAGGTTT
CTTTATTACATAGCATTTTTCAGTGGTTTTCTGTTTTCAAAACATTTTTT
TTTTAACTGGAAATTTTCAAAATGCACCTGTGTGTGAAATTTTAATTGTA
TTATCAATCAAACTTATTAATTATATTAGGAGAAATTGCTATGGGAAATG
ATTAATAATTGCTAATGTAATAGAAATAATTTCAGATTGACTCATGCTAA
TAAAGCTAATTTAAAAATTATAACACCTGACTCCCCTAGTGAATCATTGA
AATTAAATGTCATTAATAAAGTATCCCGCCCATCTTTTTTTTAACCTAAT
TTTTAATTTTGCAACAAATTCACTCCTAAACCCAGATTAGTCAGTGGTGC
CATTTTTCCACCTCTCTACAGAAATTTGTCAAACATCATTTCTATCTCCT
CCATAAAAGTGATTTTAGTCAATTGACCCACTAAAGCAAAGATTTTTAAA
GTTTCTGCTCGGAGTTCAGAAAACCGATGCTTCGTGAAAGTTGGTCACTT
TGAACTACCAGTCACATAGCCGACTAGATTTACGGGACAAGATGGAGTTT
TTACAAGCTCTTATTTTGATTTGGTTGGTCGTTAACCAGGTCGTTTACTT
TTTCTGAAGTATGTTATAAGAACTCCATCTCATCGGAGATTTACACTAAA
ATGTGAAAGTTCTGATAGAATAATCTAAAAGAATATTAGCCTTTTTTTTC
TATGTGTGTGATTACAGGCTAAACTAACAGGAACTGGCCAAACTCAATCG
CAAGAGGAGACGAACAAGGAGCCAATTGTTGATACTCCAACAAACACAAG
GTAATGTACCTTAAGGGAACTATAGAAATTAGAAATCATAGATTGGGTGT
TAACCTTTACATTGTTGCAAAATCTTTATAAGTTTTAAAACAACTTTCTT
TCACTTTTTAATAAGGGTGTCTTTGTAGACTTTGGTAGATATCAATACTA
TACTTAAGTTTTCAAAAAGGTTTTCAACATTATTTAATTCCTCAATCTTT
TTTTTCAGCATATAAAGTTCTTTCGGTCGATCTCTGGTATAATGTGATCA
TTGAGCAATGAAAGGTATCAACAAAAAACGTAAAATGATATTTTAAATTT
CACATAAATGTTTTCATCGTATTTGTTCAAATAAAATATATATTTTTTAC
GAGTTCATTTTGACGGCTCATGGCATGGCTGCTAGTTCTTTTTGTAGATT
CAATCTATTATCTAGCATCTCTGAGTGACTTGCAAGGCTTCTTTCAAGGT
CTTAAAAGTTTTAAAAATTTTTGTAAAGATACCTTAAAGCGGCCTTTATT
TTAGTTTCCAATCATAAAGCACATTTTGATGCTTTCTGTCAATTTATTCA
ATATTTTTCAGGGGAAGTGTTTTGCGTTATCAACACTTGTCTTTTTTTCG
GATTTTTATAATAATGATACGTTTAGATAAATTTTAAGATAAAATGATAT
TTTTGTAATATTTCTTCAATCAATAATCATTTTCAGAATTCCTGATATTT
TATTTTCATTTTTCCTTTGTTTGTTGGGTATTTAATTTGTATTTTTTGTT
TATTTGATTTCTCAGTTCCTAGTTCCCAAACTCTTTGTTTTCTTTCATTA
GTGTTTACCGTTTTCAGTATGAGTCAAAGGTTTTTTAACAATAGAATTTT
GCTGACTTTCGAAAGACCTTTTCCTTGCGACTGGGTTAAATTTATTGATG
GAAATTTCTCTCTTTCCAGATAAATTTTTGGAAAGTTTTCGTAAAAATAT
TTTCTTAATTCTTTTTCCTGAACATTCGAATGTTTATCGTTTAGTTTTTT
AATCAATTATTTCTTACGATAGTATGTAATATTTTTGGTATGGAGTATTT
CTTATTTTTAGTGTTTCAACGGTAATTTATTGGATAAGAAAAAAAATGTT
AAACGACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009178XLOC_009178Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016437-exon-sc0000237-1575043694:397429..397776TCONS_00016437-exon-sc0000237-1575043694:397429..397776Clytia hemisphaericaexon
TCONS_00016437-exon-sc0000237-1575043694:394245..394360TCONS_00016437-exon-sc0000237-1575043694:394245..394360Clytia hemisphaericaexon
TCONS_00016437-exon-sc0000237-1575043694:393945..394046TCONS_00016437-exon-sc0000237-1575043694:393945..394046Clytia hemisphaericaexon
TCONS_00016437-exon-sc0000237-1575043694:393664..393724TCONS_00016437-exon-sc0000237-1575043694:393664..393724Clytia hemisphaericaexon
TCONS_00016437-exon-sc0000237-1575043694:392027..392109TCONS_00016437-exon-sc0000237-1575043694:392027..392109Clytia hemisphaericaexon
TCONS_00016437-exon-sc0000237-1575043694:390918..391818TCONS_00016437-exon-sc0000237-1575043694:390918..391818Clytia hemisphaericaexon
TCONS_00016437-exon-sc0000237-1510915933:397429..397776TCONS_00016437-exon-sc0000237-1510915933:397429..397776Clytia hemisphaericaexon
TCONS_00016437-exon-sc0000237-1510915933:394245..394360TCONS_00016437-exon-sc0000237-1510915933:394245..394360Clytia hemisphaericaexon
TCONS_00016437-exon-sc0000237-1510915933:393945..394046TCONS_00016437-exon-sc0000237-1510915933:393945..394046Clytia hemisphaericaexon
TCONS_00016437-exon-sc0000237-1510915933:393664..393724TCONS_00016437-exon-sc0000237-1510915933:393664..393724Clytia hemisphaericaexon
TCONS_00016437-exon-sc0000237-1510915933:392027..392109TCONS_00016437-exon-sc0000237-1510915933:392027..392109Clytia hemisphaericaexon
TCONS_00016437-exon-sc0000237-1510915933:390918..391818TCONS_00016437-exon-sc0000237-1510915933:390918..391818Clytia hemisphaericaexon
TCONS_00016437-exon-sc0000237-1491911889:397429..397776TCONS_00016437-exon-sc0000237-1491911889:397429..397776Clytia hemisphaericaexon
TCONS_00016437-exon-sc0000237-1491911889:394245..394360TCONS_00016437-exon-sc0000237-1491911889:394245..394360Clytia hemisphaericaexon
TCONS_00016437-exon-sc0000237-1491911889:393945..394046TCONS_00016437-exon-sc0000237-1491911889:393945..394046Clytia hemisphaericaexon
TCONS_00016437-exon-sc0000237-1491911889:393664..393724TCONS_00016437-exon-sc0000237-1491911889:393664..393724Clytia hemisphaericaexon
TCONS_00016437-exon-sc0000237-1491911889:392027..392109TCONS_00016437-exon-sc0000237-1491911889:392027..392109Clytia hemisphaericaexon
TCONS_00016437-exon-sc0000237-1491911889:390918..391818TCONS_00016437-exon-sc0000237-1491911889:390918..391818Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000237supercontigsc0000237:390918..397776 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.454	23.7194	3.08358	9.99187	51.7812	42.9234	45.6814	69.1402	0	1.58092e-09	0	8.80833e-10	0	0	0	0	7.61093e-08	0	0.00230539	0	3.11096e-06	0.815625	22.0214	15.5089	14.8904	23.4514	38.0172	18.8079	20.3792	23.2675
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016437 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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