TCONS_00016424 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016424
Unique NameTCONS_00016424
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length765

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016424 ID=TCONS_00016424|Name=TCONS_00016424|organism=Clytia hemisphaerica|type=transcript|length=765bp
taacaACATACTTCATCAAAGATGCCATCTATCTCACCAAATAAGTCATT
GAACGATTCCAAAGCTGGCGTTGCCAACAAATTATTACAACTTCCAGTGG
CTCGTGTCAAGACGATCATGAAAAGTTCACCTGATCTTGGAAATGTCAGC
TCGGAGGCTTATTTCCTGATCACTAAAGCAACAGAATGTTTTGTTCAATA
TTTAGCACAAGAAGCTCACAAGAACTCAAAAGAATGTGATGAAGTGGATT
ATAAACATTTATCTAACATTGTTCTCACTGATGACAGTTTGGAGTTCTTA
GAAGaAATCATCccacaaaaaatcaaagtcaaagaCTACTGGAAACTAAC
TGGCTACAACCCAGACCTCCAACGAAAAACACCTACAAAACAAACAAGAC
CTGACGCCATTGTTATCGATGATGATTGAACGTTTCTGATTGGACATCGA
TGATGGCGTACCAACAAGTATGAATTTCCATTGGGCGTTTTCAAGGTGCA
TTTATTTAtggtatttttttgaaaagatttcatAACAGCACCACATTTCC
AACGGTGGTAGGAAACTTGTACTATTTTTTAATCATAGGACTATTTATGT
ATAATTTATtgagtcagttttttttaaatgacgaTTTAGGAATTTTTGAT
AACTTGTTATAGATTCATACAGTTTCATGCAGACGTATTTTCTTTGCACC
CACTACTACAGGGCTCCCAGATGTCCCAATTCCGTCCTGGTTTACAGATC
TTTACTAAATTTAGA
Run BLAST on NCBI

protein sequence of TCONS_00016424-protein

>TCONS_00016424-protein ID=TCONS_00016424-protein|Name=TCONS_00016424-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
MPSISPNKSLNDSKAGVANKLLQLPVARVKTIMKSSPDLGNVSSEAYFLI
TKATECFVQYLAQEAHKNSKECDEVDYKHLSNIVLTDDSLEFLEEIIPQK
IKVKDYWKLTGYNPDLQRKTPTKQTRPDAIVIDDD
Run BLAST on NCBI

transcript from alignment at sc0000237:366984..368743+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016424 ID=TCONS_00016424|Name=TCONS_00016424|organism=Clytia hemisphaerica|type=transcript|length=1760bp|location=Sequence derived from alignment at sc0000237:366984..368743+ (Clytia hemisphaerica)
taacaACATACTTCATCAAAGATGCCATCTATCTCACCAAATAAGTCATT
GAACGATTCCAAAGCTGGCGTTGCCAACAAATTATTACAACTTCCAGTGG
CTCGTGTCAAGACGATCATGAAAAGTTCACCTGATCTTGGAAATGTCAGC
TCGGAGGCTTATTTCCTGATCACTAAAGCAACAGAATGTTTTGTTCAATA
TTTAGCACAAGAAGCTCACAAGAACTCAAAAGAATGTGATGAAGTGGATT
ATAAACATTTATGTGAGTCAAATTTCACTCTTTCTGTTGAAGTTGGATTA
CTGATTAGGATTTTCTCTTGGAGCTTAAGAATTTTCTAGtaattttgaga
gtttggaatatgtgattttttcatttcttgataGTCAAAAAAGGAATTCA
ATTTTCAGGCAGAATGTTCTTGTgatgttcttaatacgcttttaatgttt
ctttacttaaaaactgAAGCTAgatttaaaatctgttaaaatcagtactt
tcttaGTAGCTCCTAAAATCTGAGGCTCATATTGTTATTtctcttaattt
gttcttaatttgttcttaggttttggccaattttcagcctcgtgttctta
taataagttacttttttcttttgtttgacaGCTAACATTGTTCTCACTGA
TGACAGTTTGGAGTTCTTAGAAGGTATGATGATGTCAGCATTTATTTCAT
AAACTTCCCTATGATATCAGAAAGTACGTCGGAAATATACGAAATTCTAG
TGTGAACTTTAATTGGGATGAGCTAGAAATTCTTTTTATGGTAAGCCAAA
CGTTGGGAAAGGAAATCTCGATGATGATAGTTTCTTTAAGATTCTCTAAA
AGTCTCTTTTCTCATAGTTTATGGGAGAAAGCAGGGGGAGATCCAGCAGT
CTTTTGAAAAGGGTGCAACTAAAAATTTGCGGTTTTTCGAAGCTCGTACT
TTTTGGAGAAAGGCTGGGGTGGTTCGATCAATTTCCCTAACTCATTTTCT
TAAAACTCGAACGGCATTTCTTCCTCGTCTGCTTTGGTTCTCTTTAAatc
taaaatcttttttttttttctctctagaAATCATCccacaaaaaatcaaa
gtcaaagaCTACTGGAAACTAACTGGCTACAACCCAGACCTCCAACGAAA
AACACCTACAAAACAAACAAGACCTGACGCCATTGTTATCGATGATGATT
GAACGTTTCTGATTGGACATCGATGATGTAATCCTACTCATTAACCAATC
ATAATACTTCAAAATACAATTCGTTTATTTGGACTTGGGATTGGTTAAAT
ATGCTTCAAAATATCGCCTTGAGCAATATAACTTAAAAAGTTGTATTTGA
AAACGAAAATCTACGAAGACATTTGACTgttatgaaagatttttttccaa
tGTCGACATTATAATTCCATTTTTATAAACCTGCATTTGAGTTTTACAGG
GCGTACCAACAAGTATGAATTTCCATTGGGCGTTTTCAAGGTGCATTTAT
TTAtggtatttttttgaaaagatttcatAACAGCACCACATTTCCAACGG
TGGTAGGAAACTTGTACTATTTTTTAATCATAGGACTATTTATGTATAAT
TTATtgagtcagttttttttaaatgacgaTTTAGGAATTTTTGATAACTT
GTTATAGATTCATACAGTTTCATGCAGACGTATTTTCTTTGCACCCACTA
CTACAGGGCTCCCAGATGTCCCAATTCCGTCCTGGTTTACAGATCTTTAC
TAAATTTAGA

Coding sequence (CDS) from alignment at sc0000237:366984..368743+

>TCONS_00016424 ID=TCONS_00016424|Name=TCONS_00016424|organism=Clytia hemisphaerica|type=CDS|length=1224bp|location=Sequence derived from alignment at sc0000237:366984..368743+ (Clytia hemisphaerica)
ATGCCATCTATCTCACCAAATAAGTCATTGAACGATTCCAAAGCTGGCGT
TGCCAACAAATTATTACAACTTCCAGTGGCTCGTGTCAAGACGATCATGA
AAAGTTCACCTGATCTTGGAAATGTCAGCTCGGAGGCTTATTTCCTGATC
ACTAAAGCAACAGAATGTTTTGTTCAATATTTAGCACAAGAAGCTCACAA
GAACTCAAAAGAATGTGATGAAGTGGATTATAAACATTTATCTAACATTG
TTCTCACTGATGACAGTTTGGAGTTCTTAGAAGaAATCATCccacaaaaa
atcaaagtcaaagaCTACTGGAAACTAACTGGCTACAACCCAGACCTCCA
ACGAAAAACACCTACAAAACAAACAAGACCTGACGCCATTGTTATCGATG
ATGATTGAATGCCATCTATCTCACCAAATAAGTCATTGAACGATTCCAAA
GCTGGCGTTGCCAACAAATTATTACAACTTCCAGTGGCTCGTGTCAAGAC
GATCATGAAAAGTTCACCTGATCTTGGAAATGTCAGCTCGGAGGCTTATT
TCCTGATCACTAAAGCAACAGAATGTTTTGTTCAATATTTAGCACAAGAA
GCTCACAAGAACTCAAAAGAATGTGATGAAGTGGATTATAAACATTTATC
TAACATTGTTCTCACTGATGACAGTTTGGAGTTCTTAGAAGaAATCATCc
cacaaaaaatcaaagtcaaagaCTACTGGAAACTAACTGGCTACAACCCA
GACCTCCAACGAAAAACACCTACAAAACAAACAAGACCTGACGCCATTGT
TATCGATGATGATTGAATGCCATCTATCTCACCAAATAAGTCATTGAACG
ATTCCAAAGCTGGCGTTGCCAACAAATTATTACAACTTCCAGTGGCTCGT
GTCAAGACGATCATGAAAAGTTCACCTGATCTTGGAAATGTCAGCTCGGA
GGCTTATTTCCTGATCACTAAAGCAACAGAATGTTTTGTTCAATATTTAG
CACAAGAAGCTCACAAGAACTCAAAAGAATGTGATGAAGTGGATTATAAA
CATTTATCTAACATTGTTCTCACTGATGACAGTTTGGAGTTCTTAGAAGa
AATCATCccacaaaaaatcaaagtcaaagaCTACTGGAAACTAACTGGCT
ACAACCCAGACCTCCAACGAAAAACACCTACAAAACAAACAAGACCTGAC
GCCATTGTTATCGATGATGATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009171XLOC_009171Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016424-proteinTCONS_00016424-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016424-exon-sc0000237-1491911889:366984..367245TCONS_00016424-exon-sc0000237-1491911889:366984..367245Clytia hemisphaericaexon
TCONS_00016424-exon-sc0000237-1510915933:366984..367245TCONS_00016424-exon-sc0000237-1510915933:366984..367245Clytia hemisphaericaexon
TCONS_00016424-exon-sc0000237-1575043694:366984..367245TCONS_00016424-exon-sc0000237-1575043694:366984..367245Clytia hemisphaericaexon
TCONS_00016424-exon-sc0000237-1491911889:367615..367656TCONS_00016424-exon-sc0000237-1491911889:367615..367656Clytia hemisphaericaexon
TCONS_00016424-exon-sc0000237-1510915933:367615..367656TCONS_00016424-exon-sc0000237-1510915933:367615..367656Clytia hemisphaericaexon
TCONS_00016424-exon-sc0000237-1575043694:367615..367656TCONS_00016424-exon-sc0000237-1575043694:367615..367656Clytia hemisphaericaexon
TCONS_00016424-exon-sc0000237-1491911889:368061..368210TCONS_00016424-exon-sc0000237-1491911889:368061..368210Clytia hemisphaericaexon
TCONS_00016424-exon-sc0000237-1510915933:368061..368210TCONS_00016424-exon-sc0000237-1510915933:368061..368210Clytia hemisphaericaexon
TCONS_00016424-exon-sc0000237-1575043694:368061..368210TCONS_00016424-exon-sc0000237-1575043694:368061..368210Clytia hemisphaericaexon
TCONS_00016424-exon-sc0000237-1491911889:368433..368743TCONS_00016424-exon-sc0000237-1491911889:368433..368743Clytia hemisphaericaexon
TCONS_00016424-exon-sc0000237-1510915933:368433..368743TCONS_00016424-exon-sc0000237-1510915933:368433..368743Clytia hemisphaericaexon
TCONS_00016424-exon-sc0000237-1575043694:368433..368743TCONS_00016424-exon-sc0000237-1575043694:368433..368743Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000237supercontigsc0000237:366984..368743 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.1953	0.251738	5.52084e-07	0	0	2.979	0	0	6.97754	6.04412	3.93672	3.03757	4.02896	8.47285	0.874308	4.53988	8.02281	7.49606	1.92756	0	3.51053e-06	0	1.8603	1.02857	7.79689	5.23911	0	0.585807	2.53591e-08	3.15634e-07
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003958CBFA_NFYB_domain
IPR009072Histone-fold
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046982 protein heterodimerization activity
Blast
[Close]
BLAST of TCONS_00016424 vs. Swiss-Prot (Human)
Match: CHRC1 (Chromatin accessibility complex protein 1 OS=Homo sapiens GN=CHRAC1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.628e-16
Identity = 37/96 (38.54%), Postives = 59/96 (61.46%), Query Frame = 1 
Query:   67 GVANKLLQLPVARVKTIMKSSPDLGNVSSEAYFLITKATECFVQYLAQEA--HKNSKECDEVDYKHLSNIVLTDDSLEFLEEIIPQKIKVKDYWKL 348
            G   +L+ LP++R++ IMKSSP++ +++ EA  L  KATE FVQ LA  +  H + KE   + Y  L+N     ++ +FL +I+P+KI    Y K+
Sbjct:   11 GGEQRLISLPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQCLATYSYRHGSGKEKKVLTYSDLANTAQQSETFQFLADILPKKILASKYLKM 106
The following BLAST results are available for this feature:
BLAST of TCONS_00016424 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHRC11.628e-1638.54Chromatin accessibility complex protein 1 OS=Homo ... [more]
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