TCONS_00016424-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00016424-protein
Unique NameTCONS_00016424-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length135

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00016424-protein ID=TCONS_00016424-protein|Name=TCONS_00016424-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
MPSISPNKSLNDSKAGVANKLLQLPVARVKTIMKSSPDLGNVSSEAYFLI
TKATECFVQYLAQEAHKNSKECDEVDYKHLSNIVLTDDSLEFLEEIIPQK
IKVKDYWKLTGYNPDLQRKTPTKQTRPDAIVIDDD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009171XLOC_009171Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00016424TCONS_00016424Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003958CBFA_NFYB_domain
IPR009072Histone-fold
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046982 protein heterodimerization activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.20.10coord: 33..101
e-value: 1.0E-20
score: 73.4
IPR003958Transcription factor CBF/NF-Y/archaeal histone domainPFAMPF00808CBFD_NFYB_HMFcoord: 23..70
e-value: 5.5E-13
score: 48.9
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 33..100

Blast
[Close]
BLAST of TCONS_00016424-protein vs. Swiss-Prot (Human)
Match: CHRC1 (Chromatin accessibility complex protein 1 OS=Homo sapiens GN=CHRAC1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.669e-18
Identity = 37/96 (38.54%), Postives = 59/96 (61.46%), Query Frame = 0 
Query:   16 GVANKLLQLPVARVKTIMKSSPDLGNVSSEAYFLITKATECFVQYLAQEA--HKNSKECDEVDYKHLSNIVLTDDSLEFLEEIIPQKIKVKDYWKL 109
            G   +L+ LP++R++ IMKSSP++ +++ EA  L  KATE FVQ LA  +  H + KE   + Y  L+N     ++ +FL +I+P+KI    Y K+
Sbjct:   11 GGEQRLISLPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQCLATYSYRHGSGKEKKVLTYSDLANTAQQSETFQFLADILPKKILASKYLKM 106
The following BLAST results are available for this feature:
BLAST of TCONS_00016424-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHRC14.669e-1838.54Chromatin accessibility complex protein 1 OS=Homo ... [more]
back to top