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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016412 ID=TCONS_00016412|Name=TCONS_00016412|organism=Clytia hemisphaerica|type=transcript|length=1358bp
agaaaaatataaaagaaagaaaaactgtAGAAAATAAACAGACAAACAGA
TTATCCATGGTTTTTTGAATGACTGAAACctttcatcaaaaacatcaaat
caagaGTGAAGAGCCTGAATCTGCAACTCCTGAACAAGTATCCAGTCTAA
ATGGATCAATTTATTGCCAAGAGTCCAGCCTAGATGGAACCATTTACTCC
AATAGAAACTCTTCTGAGTCTAGCTTTGGCAATGCAACCCAAAATGAAGA
TTCAACACTTCAATTCACCCGCAAACCTGGTAATATCAAAGTTGAGCAAG
ATGTTGATCTATTTGACTCTTCATCAAATTCTTACTTGATAACTCAAGCT
AATGTAAACGAGACTTTAAACCACAGCTTTGATTCTTTTAATATCTCATC
GAATTCAAATCGAAATGCAAATATCTTTTCACAAGGCGTTGTGGAGTGTC
CTAATGTTAATGAAACTCATCATAGTAAAACCATCAACTTGGCTTCTATT
TTTTCTGAGCCCTCGTTTCAAAATGTTGATACTCTAAAACGTAACAAACA
AACTCTTTATGATGGAGATAAAACTCTTGAAACTGAAAAAACAATAAACA
CTTCAACGGAAAATATTGGCGATAAAACCGTTCTTGAAACAAGTACAcca
attctttttcaatctcAACAAACGTCAGACAGTCTAAACACCTTAACCGT
CACCAATGGAGatgaaaacaacaacaatgacgatgatgacgtcattttat
cgGACGATTCGGACAAAGCCGATCCGAATGCTGGTAAACTCTCATGGACA
GTTCCGGCGATTTCCACGTATTGCGTACGTGAAGAGGAAGCGGAAAACTC
GAGAGCGTATAAACGTCATTACGTAACCAGTGCGCAAGTTGTGTCCGTAG
CGCGCGTACGTAAGAAGGTACCGATGAACCGTGGTTTTCATTACGCTGGA
TCGCCGCTATTTCAACAGATTCATGAACAGTTCGGAGAGATCTATCCTAC
TGCTCAAGAGAACCACGCCCTCCCGCTTCAACTACTTCACACGTGTCTTG
TGAGCAAACTGGTCAAAGAATGTTTCTTTCATGCAAAAACAAAGAAGGAA
TTATCAATGGCTTTCCTACCTATCACCAAAATGCCTAATAAACTCTCTGA
AATGATTTGGAAGATTGGTAACGAATTGATGAAATCACCATACGGTAATG
CTGACAAAgactttttccttcaaaagatGAAATTGTTGACTCATTATCCG
CAAGGTGTTAGGATCTACCTGGATGAAGTTGTCAGGTACTTGGGTGAATC
CCCAAAGTATTATGTTATTATGTtatcaaaaaaagattaaatcAGAATCT
GTTATTCG Run BLAST on NCBI protein sequence of TCONS_00016412-protein >TCONS_00016412-protein ID=TCONS_00016412-protein|Name=TCONS_00016412-protein|organism=Clytia hemisphaerica|type=polypeptide|length=423bp
MTETFHQKHQIKSEEPESATPEQVSSLNGSIYCQESSLDGTIYSNRNSSE
SSFGNATQNEDSTLQFTRKPGNIKVEQDVDLFDSSSNSYLITQANVNETL
NHSFDSFNISSNSNRNANIFSQGVVECPNVNETHHSKTINLASIFSEPSF
QNVDTLKRNKQTLYDGDKTLETEKTINTSTENIGDKTVLETSTPILFQSQ
QTSDSLNTLTVTNGDENNNNDDDDVILSDDSDKADPNAGKLSWTVPAIST
YCVREEEAENSRAYKRHYVTSAQVVSVARVRKKVPMNRGFHYAGSPLFQQ
IHEQFGEIYPTAQENHALPLQLLHTCLVSKLVKECFFHAKTKKELSMAFL
PITKMPNKLSEMIWKIGNELMKSPYGNADKDFFLQKMKLLTHYPQGVRIY
LDEVVRYLGESPKYYVIMLSKKD Run BLAST on NCBI transcript from alignment at sc0000237:186820..189771+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016412 ID=TCONS_00016412|Name=TCONS_00016412|organism=Clytia hemisphaerica|type=transcript|length=2952bp|location=Sequence derived from alignment at sc0000237:186820..189771+ (Clytia hemisphaerica)
agaaaaatataaaagaaagaaaaactgtAGAAAATAAACAGACAAACAGA
TTATCCATGGTTTTTTGAATGACTGAAACctttcatcaaaaacatcaaat
caagaGTGAAGAGCCTGAATCTGCAACTCCTGAACAAGTATCCAGTCTAA
ATGGATCAATTTATTGCCAAGAGTCCAGCCTAGATGGAACCATTTACTCC
AATAGAAACTCTTCTGAGTCTAGCTTTGGCAATGCAACCCAAAATGAAGA
TTCAACACTTCAATTCACCCGCAAACCTGGTAATATCAAAGTTGAGCAAG
ATGTTGATCTATTTGACTCTTCATCAAATTCTTACTTGATAACTCAAGCT
AATGTAAACGAGACTTTAAACCACAGCTTTGATTCTTTTAATATCTCATC
GAATTCAAATCGAAATGCAAATATCTTTTCACAAGGCGTTGTGGAGTGTC
CTAATGTTAATGAAACTCATCATAGTAAAACCATCAACTTGGCTTCTATT
TTTTCTGAGCCCTCGTTTCAAAATGTTGATACTCTAAAACGTAACAAACA
AACTCTTTATGATGGAGATAAAACTCTTGAAACTGAAAAAACAATAAACA
CTTCAACGGAAAATATTGGCGATAAAACCGTTCTTGAAACAAGTACAcca
attctttttcaatctcAACAAACGTCAGACAGTCTAAACACCTTAACCGT
CACCAATGGAGatgaaaacaacaacaatgacgatgatgacgtcattttat
cgGACGATTCGGACAAAGCCGATCCGAATGCTGGTAAACTCTCATGGACA
GTTCCGGCGATTTCCACGTATTGCGTACGTGAAGAGGAAGCGGAAAACTC
GAGAGCGTATAAACGTCATTACGTAACCAGTGCGCAAGTTGTGTCCGTAG
CGCGCGTACGTAAGAAGGTACCGATGAACCGTGGTTTTCATTACGCTGGA
TCGCCGCTATTTCAACAGATTCATGAACAGTTCGGAGAGATCTATCCTAC
TGGTATGTATATCTATCTCtctttacttttttgtttttagtttcCTCAAA
GCGTCCATACTTTTCGATTACTGGAATGTTCTCTTTGATGATATAGAAAG
GAAATACGTCTTCTTTTGCTGACAAAACAGAATACATTATAGCTGGAAAT
ATTCGCTTACCATCAATAAGTAACGCTTACTTCATTTCAAAATActgcta
tggtaattgattcccagaggagttcaAGAGAACTTTTATGCTATTTATAG
AAGTGATACCTGGAGACTTGAAGaattaatcaccttggtaatggtttaAA
AACGAGGCAGGTTACATTATAGaaataattaatgaaaattaGATTGGTGC
CTtggagactgttcatctaacgtttccagatcatctaaaaagaacgacag
aAATAACTATTAAAATGCGACAAAAAGAAGTGACAaatcctaaccctaac
cctaacaaaGGACGACATATCTATTATAATATTACTATAATAATTTCGAT
TTCAGCTCAAGAGAACCACGCCCTCCCGCTTCAACTACTTCACACGTGTC
TTGTGAGCAAACTGGTCAAAGAATGTTTCTTTCATGCAAAAACAAAGAAG
GAATTATCAATGGCTTTCCTACCTATCACCAAAATGCCTAATAAACTCTC
TGAAATGATTTGGAAGGTGTGTATACCTCGTTTGTTCTTGAACCTGAAAC
GTGAAAATCCGAAAATATACCGTTTTTACCAAACGAAGCTCAAGGAGATT
TGAATCTAGACTACTTCATAATTTGTAATTCCATTTCCATTACTTTCCAT
TACATTTTATTCGGTAAATCGATTTCAGGTTTGTTCTTAGTTTCAACGAA
TCTGATCATCAGCAGTGTGCCTATATACTACTTTATGTTTTTATCGATTG
TGAATTAGATAGTTCTAGTCTTTATTTTATGTCGGACCTCAATTAATTTC
CTGAAGTGTTTTAATAATGTTCctatttgtgttttgttttcatcttctca
cttttcaaagaattataATGAAACTTTTGATGGCATTCTTCACATTTCCC
CATAGATTGGTAACGAATTGATGAAATCACCATACGGTAATGCTGACAAA
gactttttccttcaaaagatGAAATTGTTGACTCATTATCCGCAAGGTGT
TAGGATCTACCTGGATGAAGTTGTCAGGTACTTGGGTGAATCCCCAAAGT
ATTATGTTATTATGTtatcaaaaaaagattaaatcAGAATCTGTTATTCG
TAAAATATTTTCGGCTTTCAatctagacgatgttatcgtcttTTACAGGG
ATGGtaaggcgggaaaatatatgTGTGCGAAGTTTACAGCCGTAATAGCG
GTATAtggaaaaaaaatcggcggtAGAAGTTCGAAAAACTCTGCCGACTG
CAaacctttttctgtaaaaaaaccgtttgcgaattttcttcggctttggg
cttactgtttttcttagatagtgatttgtcttagactatagcaatAGTTT
ACTTTTAATCTAAAATTNAATCGATTTCAGGTTTGTTCTTAGTTTCAACG
AATCTGATCATCAGCAGTGTGCCTATATACTACTTTATGTTTTTATCGAT
TGTGAATTAGATAGTTCTAGTCTTTATTTTATGTCGGACCTCAATTAATT
TCCTGAAGTGTTTTAATAATGTTCctatttgtgttttgttttcatcttct
cacttttcaaagaattataATGAAACTTTTGATGGCATTCTTCACATTTC
CCCATAGATTGGTAACGAATTGATGAAATCACCATACGGTAATGCTGACA
AAgactttttccttcaaaagatGAAATTGTTGACTCATTATCCGCAAGGT
GTTAGGATCTACCTGGATGAAGTTGTCAGGTACTTGGGTGAATCCCCAAA
GTATTATGTTATTATGTtatcaaaaaaagattaaatcAGAATCTGTTATT
CG Coding sequence (CDS) from alignment at sc0000237:186820..189771+ >TCONS_00016412 ID=TCONS_00016412|Name=TCONS_00016412|organism=Clytia hemisphaerica|type=CDS|length=3816bp|location=Sequence derived from alignment at sc0000237:186820..189771+ (Clytia hemisphaerica)
ATGACTGAAACctttcatcaaaaacatcaaatcaagaGTGAAGAGCCTGA
ATCTGCAACTCCTGAACAAGTATCCAGTCTAAATGGATCAATTTATTGCC
AAGAGTCCAGCCTAGATGGAACCATTTACTCCAATAGAAACTCTTCTGAG
TCTAGCTTTGGCAATGCAACCCAAAATGAAGATTCAACACTTCAATTCAC
CCGCAAACCTGGTAATATCAAAGTTGAGCAAGATGTTGATCTATTTGACT
CTTCATCAAATTCTTACTTGATAACTCAAGCTAATGTAAACGAGACTTTA
AACCACAGCTTTGATTCTTTTAATATCTCATCGAATTCAAATCGAAATGC
AAATATCTTTTCACAAGGCGTTGTGGAGTGTCCTAATGTTAATGAAACTC
ATCATAGTAAAACCATCAACTTGGCTTCTATTTTTTCTGAGCCCTCGTTT
CAAAATGTTGATACTCTAAAACGTAACAAACAAACTCTTTATGATGGAGA
TAAAACTCTTGAAACTGAAAAAACAATAAACACTTCAACGGAAAATATTG
GCGATAAAACCGTTCTTGAAACAAGTACAccaattctttttcaatctcAA
CAAACGTCAGACAGTCTAAACACCTTAACCGTCACCAATGGAGatgaaaa
caacaacaatgacgatgatgacgtcattttatcgGACGATTCGGACAAAG
CCGATCCGAATGCTGGTAAACTCTCATGGACAGTTCCGGCGATTTCCACG
TATTGCGTACGTGAAGAGGAAGCGGAAAACTCGAGAGCGTATAAACGTCA
TTACGTAACCAGTGCGCAAGTTGTGTCCGTAGCGCGCGTACGTAAGAAGG
TACCGATGAACCGTGGTTTTCATTACGCTGGATCGCCGCTATTTCAACAG
ATTCATGAACAGTTCGGAGAGATCTATCCTACTGCTCAAGAGAACCACGC
CCTCCCGCTTCAACTACTTCACACGTGTCTTGTGAGCAAACTGGTCAAAG
AATGTTTCTTTCATGCAAAAACAAAGAAGGAATTATCAATGGCTTTCCTA
CCTATCACCAAAATGCCTAATAAACTCTCTGAAATGATTTGGAAGATTGG
TAACGAATTGATGAAATCACCATACGGTAATGCTGACAAAgactttttcc
ttcaaaagatGAAATTGTTGACTCATTATCCGCAAGGTGTTAGGATCTAC
CTGGATGAAGTTGTCAGGTACTTGGGTGAATCCCCAAAGTATTATGTTAT
TATGTtatcaaaaaaagattaaATGACTGAAACctttcatcaaaaacatc
aaatcaagaGTGAAGAGCCTGAATCTGCAACTCCTGAACAAGTATCCAGT
CTAAATGGATCAATTTATTGCCAAGAGTCCAGCCTAGATGGAACCATTTA
CTCCAATAGAAACTCTTCTGAGTCTAGCTTTGGCAATGCAACCCAAAATG
AAGATTCAACACTTCAATTCACCCGCAAACCTGGTAATATCAAAGTTGAG
CAAGATGTTGATCTATTTGACTCTTCATCAAATTCTTACTTGATAACTCA
AGCTAATGTAAACGAGACTTTAAACCACAGCTTTGATTCTTTTAATATCT
CATCGAATTCAAATCGAAATGCAAATATCTTTTCACAAGGCGTTGTGGAG
TGTCCTAATGTTAATGAAACTCATCATAGTAAAACCATCAACTTGGCTTC
TATTTTTTCTGAGCCCTCGTTTCAAAATGTTGATACTCTAAAACGTAACA
AACAAACTCTTTATGATGGAGATAAAACTCTTGAAACTGAAAAAACAATA
AACACTTCAACGGAAAATATTGGCGATAAAACCGTTCTTGAAACAAGTAC
AccaattctttttcaatctcAACAAACGTCAGACAGTCTAAACACCTTAA
CCGTCACCAATGGAGatgaaaacaacaacaatgacgatgatgacgtcatt
ttatcgGACGATTCGGACAAAGCCGATCCGAATGCTGGTAAACTCTCATG
GACAGTTCCGGCGATTTCCACGTATTGCGTACGTGAAGAGGAAGCGGAAA
ACTCGAGAGCGTATAAACGTCATTACGTAACCAGTGCGCAAGTTGTGTCC
GTAGCGCGCGTACGTAAGAAGGTACCGATGAACCGTGGTTTTCATTACGC
TGGATCGCCGCTATTTCAACAGATTCATGAACAGTTCGGAGAGATCTATC
CTACTGCTCAAGAGAACCACGCCCTCCCGCTTCAACTACTTCACACGTGT
CTTGTGAGCAAACTGGTCAAAGAATGTTTCTTTCATGCAAAAACAAAGAA
GGAATTATCAATGGCTTTCCTACCTATCACCAAAATGCCTAATAAACTCT
CTGAAATGATTTGGAAGATTGGTAACGAATTGATGAAATCACCATACGGT
AATGCTGACAAAgactttttccttcaaaagatGAAATTGTTGACTCATTA
TCCGCAAGGTGTTAGGATCTACCTGGATGAAGTTGTCAGGTACTTGGGTG
AATCCCCAAAGTATTATGTTATTATGTtatcaaaaaaagattaaATGACT
GAAACctttcatcaaaaacatcaaatcaagaGTGAAGAGCCTGAATCTGC
AACTCCTGAACAAGTATCCAGTCTAAATGGATCAATTTATTGCCAAGAGT
CCAGCCTAGATGGAACCATTTACTCCAATAGAAACTCTTCTGAGTCTAGC
TTTGGCAATGCAACCCAAAATGAAGATTCAACACTTCAATTCACCCGCAA
ACCTGGTAATATCAAAGTTGAGCAAGATGTTGATCTATTTGACTCTTCAT
CAAATTCTTACTTGATAACTCAAGCTAATGTAAACGAGACTTTAAACCAC
AGCTTTGATTCTTTTAATATCTCATCGAATTCAAATCGAAATGCAAATAT
CTTTTCACAAGGCGTTGTGGAGTGTCCTAATGTTAATGAAACTCATCATA
GTAAAACCATCAACTTGGCTTCTATTTTTTCTGAGCCCTCGTTTCAAAAT
GTTGATACTCTAAAACGTAACAAACAAACTCTTTATGATGGAGATAAAAC
TCTTGAAACTGAAAAAACAATAAACACTTCAACGGAAAATATTGGCGATA
AAACCGTTCTTGAAACAAGTACAccaattctttttcaatctcAACAAACG
TCAGACAGTCTAAACACCTTAACCGTCACCAATGGAGatgaaaacaacaa
caatgacgatgatgacgtcattttatcgGACGATTCGGACAAAGCCGATC
CGAATGCTGGTAAACTCTCATGGACAGTTCCGGCGATTTCCACGTATTGC
GTACGTGAAGAGGAAGCGGAAAACTCGAGAGCGTATAAACGTCATTACGT
AACCAGTGCGCAAGTTGTGTCCGTAGCGCGCGTACGTAAGAAGGTACCGA
TGAACCGTGGTTTTCATTACGCTGGATCGCCGCTATTTCAACAGATTCAT
GAACAGTTCGGAGAGATCTATCCTACTGCTCAAGAGAACCACGCCCTCCC
GCTTCAACTACTTCACACGTGTCTTGTGAGCAAACTGGTCAAAGAATGTT
TCTTTCATGCAAAAACAAAGAAGGAATTATCAATGGCTTTCCTACCTATC
ACCAAAATGCCTAATAAACTCTCTGAAATGATTTGGAAGATTGGTAACGA
ATTGATGAAATCACCATACGGTAATGCTGACAAAgactttttccttcaaa
agatGAAATTGTTGACTCATTATCCGCAAGGTGTTAGGATCTACCTGGAT
GAAGTTGTCAGGTACTTGGGTGAATCCCCAAAGTATTATGTTATTATGTt
atcaaaaaaagattaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00016412-exon-sc0000237-1491911889:186820..187821 | TCONS_00016412-exon-sc0000237-1491911889:186820..187821 | Clytia hemisphaerica | exon |
| TCONS_00016412-exon-sc0000237-1510915933:186820..187821 | TCONS_00016412-exon-sc0000237-1510915933:186820..187821 | Clytia hemisphaerica | exon |
| TCONS_00016412-exon-sc0000237-1575043694:186820..187821 | TCONS_00016412-exon-sc0000237-1575043694:186820..187821 | Clytia hemisphaerica | exon |
| TCONS_00016412-exon-sc0000237-1491911889:188325..188485 | TCONS_00016412-exon-sc0000237-1491911889:188325..188485 | Clytia hemisphaerica | exon |
| TCONS_00016412-exon-sc0000237-1510915933:188325..188485 | TCONS_00016412-exon-sc0000237-1510915933:188325..188485 | Clytia hemisphaerica | exon |
| TCONS_00016412-exon-sc0000237-1575043694:188325..188485 | TCONS_00016412-exon-sc0000237-1575043694:188325..188485 | Clytia hemisphaerica | exon |
| TCONS_00016412-exon-sc0000237-1491911889:189577..189771 | TCONS_00016412-exon-sc0000237-1491911889:189577..189771 | Clytia hemisphaerica | exon |
| TCONS_00016412-exon-sc0000237-1510915933:189577..189771 | TCONS_00016412-exon-sc0000237-1510915933:189577..189771 | Clytia hemisphaerica | exon |
| TCONS_00016412-exon-sc0000237-1575043694:189577..189771 | TCONS_00016412-exon-sc0000237-1575043694:189577..189771 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000237 | supercontig | sc0000237:186820..189771 + |
Blast
The following BLAST results are available for this feature:
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