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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016408 ID=TCONS_00016408|Name=TCONS_00016408|organism=Clytia hemisphaerica|type=transcript|length=2124bpRun BLAST on NCBI protein sequence of TCONS_00016408-protein >TCONS_00016408-protein ID=TCONS_00016408-protein|Name=TCONS_00016408-protein|organism=Clytia hemisphaerica|type=polypeptide|length=487bp KIPRKRAHSIFKMADSEEGESAFYRSKSRRKRTHSYGSMTTSCDENDDDPRun BLAST on NCBI transcript from alignment at sc0000237:169205..181125+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016408 ID=TCONS_00016408|Name=TCONS_00016408|organism=Clytia hemisphaerica|type=transcript|length=11921bp|location=Sequence derived from alignment at sc0000237:169205..181125+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000237:169205..181125+ >TCONS_00016408 ID=TCONS_00016408|Name=TCONS_00016408|organism=Clytia hemisphaerica|type=CDS|length=17568bp|location=Sequence derived from alignment at sc0000237:169205..181125+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
No biomaterial libraries express this feature.
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00016408 vs. Swiss-Prot (Human)
Match: PTSS1 (Phosphatidylserine synthase 1 OS=Homo sapiens GN=PTDSS1 PE=1 SV=1) HSP 1 Score: 387.111 bits (993), Expect = 4.676e-126 Identity = 208/439 (47.38%), Postives = 284/439 (64.69%), Query Frame = 2
Query: 110 GSMTTSCDENDDDP-----SEQKVGDITITFFYKPRTLTALALCIIAMLYFAFVRDAEHNQHDNFWHGCLGALALFLVICLLICPNGPFIRPHPAIWRLVFGISVVYAMFLAFLLFQSYKDFLTILQYFDPNLKGA--EPDTEVYSDDC---SWSVFVSRLDIFCVAHFLGFTVKAIMLRNAHLLWLMSITWEFTEIAFSHLLENFKECWWDSLILDILLCNGLGIHFGLFICKKLEMRTYYWESIKDLHGASKKFRRAVMQFTPVSWTSVQWFNPKDVKSRFLALCLLVLMWQVAELNTFFLKHIFAIPTHHWLNVARIVLISLITMPTTRQYYLYSTDTRCKRLGTQAWVFVCITCLEAILCIRHARELFSQTQYTWVAAWVAVESFACFILVYVLIIWR---GKRKLT-----DGKVPSRVPSHLRFKEVDGQENT 1372
GS T S D+ + +EQ+V DITI FFY+P T+T L+ I++++YFAF RD + DN W G L + FL+I +L PNGPF RPHPA+WR+VFG+SV+Y +FL FLLF +++ +++ + DPNL+ A E D Y+ +C +W +S DIF HF G+ +KA+++R+ L W +SITWE TE+ F HLL NF ECWWD +ILDILLCNG GI G+ +C+ LEMRTY+W S KD+H + K +RAV+QFTP SWT V+WF+PK R + L +++WQ+ ELNTFFLKHIF H L+ RI+ I IT PT RQYY Y TDT+CKR+GTQ WVF I LEAI+CI+ ++LFS+TQ +V W+ +F F+ +Y +I + G R+ T DG + H R K G E++
Sbjct: 6 GSRTLSKDDVNYKMHFRMINEQQVEDITIDFFYRPHTITLLSFTIVSLMYFAFTRD-DSVPEDNIWRGILSVIFFFLIISVLAFPNGPFTRPHPALWRMVFGLSVLYFLFLVFLLFLNFEQVKSLMYWLDPNLRYATREADVMEYAVNCHVITWERIISHFDIFAFGHFWGWAMKALLIRSYGLCWTISITWELTELFFMHLLPNFAECWWDQVILDILLCNGGGIWLGMVVCRFLEMRTYHWASFKDIHTTTGKIKRAVLQFTPASWTYVRWFDPKSSFQRVAGVYLFMIIWQLTELNTFFLKHIFVFQASHPLSWGRILFIGGITAPTVRQYYAYLTDTQCKRVGTQCWVFGVIGFLEAIVCIKFGQDLFSKTQILYVVLWLLCVAFTTFLCLYGMIWYAEHYGHREKTYSECEDGTYSPEISWHHR-KGTKGSEDS 442 The following BLAST results are available for this feature:
BLAST of TCONS_00016408 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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