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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016402 ID=TCONS_00016402|Name=TCONS_00016402|organism=Clytia hemisphaerica|type=transcript|length=2255bpRun BLAST on NCBI protein sequence of TCONS_00016402-protein >TCONS_00016402-protein ID=TCONS_00016402-protein|Name=TCONS_00016402-protein|organism=Clytia hemisphaerica|type=polypeptide|length=334bp MSKRKAPAQNVNSDFCDFLHELAEYEKNVSRNIFKYKAYRKASSILAEHPRun BLAST on NCBI transcript from alignment at sc0000237:67346..75874+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016402 ID=TCONS_00016402|Name=TCONS_00016402|organism=Clytia hemisphaerica|type=transcript|length=8529bp|location=Sequence derived from alignment at sc0000237:67346..75874+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000237:67346..75874+ >TCONS_00016402 ID=TCONS_00016402|Name=TCONS_00016402|organism=Clytia hemisphaerica|type=CDS|length=14070bp|location=Sequence derived from alignment at sc0000237:67346..75874+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00016402 vs. Swiss-Prot (Human)
Match: DPOLB (DNA polymerase beta OS=Homo sapiens GN=POLB PE=1 SV=3) HSP 1 Score: 437.573 bits (1124), Expect = 4.214e-147 Identity = 210/333 (63.06%), Postives = 262/333 (78.68%), Query Frame = 3
Query: 42 APAQNVNSDFCDFLHELAEYEKNVSRNIFKYKAYRKASSILAEHPTRIQSGKEAMKLSGIGAAIGKKIDEFLKTGKLEKLEKIRNDDTNVSINFLTRVSGIGPAAAKKFVDDGITTLDDLKENESKLNHHQKIGVKYFTEFEERIPRAEMENHEKFVLDKIKKLDSKFTATICGSYRRGAESSGDIDVLLTHPTFTAKDQNSKKEQNKLLKKVVDYLQSNKYITDIISHGASKFMGVCKL-----EKVSSHRRLDLRLIPHDQYYCGVLYFTGSDVFNQQMRTQALEKGFTINEYTIRPVGSTGTPGESIEVSSEKDVFDIIDKPYVEPKDRN 1025
AP + +N D L ELA +EKNVS+ I KY AYRKA+S++A++P +I+SG EA KL G+G I +KIDEFL TGKL KLEKIR DDT+ SINFLTRVSGIGP+AA+KFVD+GI TL+DL++NE KLNHHQ+IG+KYF +FE+RIPR EM + VL+++KK+DS++ AT+CGS+RRGAESSGD+DVLLTHP+FT++ +Q KLL +VV+ LQ +ITD +S G +KFMGVC+L EK HRR+D+RLIP DQYYCGVLYFTGSD+FN+ MR ALEKGFTINEYTIRP+G TG GE + V SEKD+FD I Y EPKDR+
Sbjct: 6 APQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSEST----KQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIFDYIQWKYREPKDRS 334 The following BLAST results are available for this feature:
BLAST of TCONS_00016402 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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