TCONS_00016402-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00016402-protein
Unique NameTCONS_00016402-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length334

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00016402-protein ID=TCONS_00016402-protein|Name=TCONS_00016402-protein|organism=Clytia hemisphaerica|type=polypeptide|length=334bp
MSKRKAPAQNVNSDFCDFLHELAEYEKNVSRNIFKYKAYRKASSILAEHP
TRIQSGKEAMKLSGIGAAIGKKIDEFLKTGKLEKLEKIRNDDTNVSINFL
TRVSGIGPAAAKKFVDDGITTLDDLKENESKLNHHQKIGVKYFTEFEERI
PRAEMENHEKFVLDKIKKLDSKFTATICGSYRRGAESSGDIDVLLTHPTF
TAKDQNSKKEQNKLLKKVVDYLQSNKYITDIISHGASKFMGVCKLEKVSS
HRRLDLRLIPHDQYYCGVLYFTGSDVFNQQMRTQALEKGFTINEYTIRPV
GSTGTPGESIEVSSEKDVFDIIDKPYVEPKDRNV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009161XLOC_009161Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00016402TCONS_00016402Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022312DNA_pol_X
IPR002008DNA_pol_X_beta-like
IPR002054DNA-dir_DNA_pol_X
IPR010996DNA_pol_b-like_N
IPR018944DNA_pol_lambd_fingers_domain
IPR029398PolB_thumb
IPR028207DNA_pol_B_palm_palm
IPR019843DNA_pol-X_BS
Vocabulary: Molecular Function
TermDefinition
GO:0034061DNA polymerase activity
GO:0003677DNA binding
GO:0003887DNA-directed DNA polymerase activity
GO:0016779nucleotidyltransferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003887 DNA-directed DNA polymerase activity
molecular_function GO:0034061 DNA polymerase activity
molecular_function GO:0016779 nucleotidyltransferase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022312DNA polymerase family XPRINTSPR00869DNAPOLXcoord: 269..282
score: 46.7
coord: 253..262
score: 50.0
coord: 314..332
score: 43.72
coord: 190..198
score: 61.54
coord: 105..122
score: 43.59
coord: 176..190
score: 52.31
IPR002008DNA polymerase family X, beta-likePRINTSPR00870DNAPOLXBETAcoord: 252..260
score: 68.89
coord: 64..81
score: 61.11
coord: 137..151
score: 52.0
coord: 267..274
score: 82.5
coord: 315..332
score: 55.56
coord: 177..196
score: 71.0
IPR002054DNA-directed DNA polymerase XSMARTSM00483polxneu3coord: 10..333
e-value: 9.5E-112
score: 387.2
IPR002054DNA-directed DNA polymerase XCDDcd00141NT_POLXccoord: 14..332
e-value: 7.34881E-134
score: 385.395
IPR010996DNA polymerase beta-like, N-terminal domainPFAMPF14716HHH_8coord: 12..77
e-value: 2.1E-17
score: 63.2
IPR010996DNA polymerase beta-like, N-terminal domainSUPERFAMILY47802DNA polymerase beta, N-terminal domain-likecoord: 2..86
NoneNo IPR availableGENE3D1.10.150.20coord: 93..147
e-value: 4.8E-18
score: 64.7
NoneNo IPR availableGENE3D1.10.150.110coord: 1..91
e-value: 8.2E-27
score: 93.0
NoneNo IPR availableGENE3D3.30.460.10coord: 149..268
e-value: 4.1E-36
score: 123.3
NoneNo IPR availableSUPERFAMILY81585PsbU/PolX domain-likecoord: 92..147
NoneNo IPR availableSUPERFAMILY81301Nucleotidyltransferasecoord: 149..333
IPR018944DNA polymerase lambda, fingers domainPFAMPF10391DNA_pol_lambd_fcoord: 100..147
e-value: 9.6E-18
score: 63.7
IPR029398DNA polymerase beta, thumb domainPFAMPF14791DNA_pol_B_thumbcoord: 268..333
e-value: 9.4E-18
score: 64.1
IPR029398DNA polymerase beta, thumb domainGENE3D3.30.210.10coord: 269..332
e-value: 3.1E-20
score: 71.4
IPR028207DNA polymerase beta, palm domainPFAMPF14792DNA_pol_B_palmcoord: 149..260
e-value: 1.0E-34
score: 119.1
IPR019843DNA polymerase family X, binding sitePROSITEPS00522DNA_POLYMERASE_Xcoord: 179..198

Blast
[Close]
BLAST of TCONS_00016402-protein vs. Swiss-Prot (Human)
Match: DPOLB (DNA polymerase beta OS=Homo sapiens GN=POLB PE=1 SV=3)

HSP 1 Score: 447.203 bits (1149), Expect = 7.644e-159
Identity = 215/338 (63.61%), Postives = 267/338 (78.99%), Query Frame = 0 
Query:    1 MSKRKAPAQNVNSDFCDFLHELAEYEKNVSRNIFKYKAYRKASSILAEHPTRIQSGKEAMKLSGIGAAIGKKIDEFLKTGKLEKLEKIRNDDTNVSINFLTRVSGIGPAAAKKFVDDGITTLDDLKENESKLNHHQKIGVKYFTEFEERIPRAEMENHEKFVLDKIKKLDSKFTATICGSYRRGAESSGDIDVLLTHPTFTAKDQNSKKEQNKLLKKVVDYLQSNKYITDIISHGASKFMGVCKL-----EKVSSHRRLDLRLIPHDQYYCGVLYFTGSDVFNQQMRTQALEKGFTINEYTIRPVGSTGTPGESIEVSSEKDVFDIIDKPYVEPKDRN 333
            MSKRKAP + +N    D L ELA +EKNVS+ I KY AYRKA+S++A++P +I+SG EA KL G+G  I +KIDEFL TGKL KLEKIR DDT+ SINFLTRVSGIGP+AA+KFVD+GI TL+DL++NE KLNHHQ+IG+KYF +FE+RIPR EM   +  VL+++KK+DS++ AT+CGS+RRGAESSGD+DVLLTHP+FT++      +Q KLL +VV+ LQ   +ITD +S G +KFMGVC+L     EK   HRR+D+RLIP DQYYCGVLYFTGSD+FN+ MR  ALEKGFTINEYTIRP+G TG  GE + V SEKD+FD I   Y EPKDR+
Sbjct:    1 MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSEST----KQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIFDYIQWKYREPKDRS 334
The following BLAST results are available for this feature:
BLAST of TCONS_00016402-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DPOLB7.644e-15963.61DNA polymerase beta OS=Homo sapiens GN=POLB PE=1 S... [more]
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