TCONS_00016378 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00016378
Unique Name	TCONS_00016378
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	753

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000233:329518..336343-

transcript sequence

>TCONS_00016378 ID=TCONS_00016378|Name=TCONS_00016378|organism=Clytia hemisphaerica|type=transcript|length=753bp
ACCCCGTCCTCTATGATTCGCTCGCTATTAGTTGAGTGTAGATAGGTCCA
TAGCGCTGGATATCGAATTTTAATACCCGTGATACACGGTGTAATTTTCC
CGCGAAACGTTCGACCAGCGTGGTCAGTCAAAACAAACATAAACCTCGCA
AGCCATCACAGCACTGCCAGTCAAACACCTCTGAAATAAATCCAAATCAT
AGAGTTTCAAGCTAAGTAGCTGAAAGAAGATTGGAAGATAGCTGCCCCCA
ATAATGACATATTGGAAGAGATATTACAGACAGATAGCTGAAATTAATAT
TTTCCCCAATCATCAAAACAAGAGATTCCATTCTTCTACCTCATCTGAAG
ACGAAAGCATATTAGCAATTTGTACTGAAAGAAAACTAAGAGATAAGAAC
ATAGCTGCAGATCCAAACTTGTTTTTTGACATCGAAAGCTACGACGAAGA
ATTCTATATTGTCAAAACTGTTGACTCAAGCCATCACGAGATCATTCCAC
CTGACCAGTGTATCTGTAAAGAAAAGAAGTCATTTGAATCAAAACCAAAA
GTCACTCCGACTGACGAAAAAGAGGCTGAAGAAATTCGAGAAGAAGAAGG
AATGAACAAAACAATGAAGAAGATAAACGCATTCCAATCACACTTACACG
AAAGTTGTATAGAAGAGTTGGAAGAGATGAAAAAGTTTGGGTTACCAACT
TACTTTTTGAATTCACCTTGGGATAATGAACCAGAAGaggaggaaagaaa
aaa

Run BLAST on NCBI

transcript from alignment at sc0000233:329518..336343-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00016378 ID=TCONS_00016378|Name=TCONS_00016378|organism=Clytia hemisphaerica|type=transcript|length=6826bp|location=Sequence derived from alignment at sc0000233:329518..336343- (Clytia hemisphaerica)
ACCCCGTCCTCTATGATTCGCTCGCTATTAGTTGAGTGTAGATAGGTCCA
TAGCGCTGGATATCGAATTTTAATACCCGTGATACACGGTGTAATTTTCC
CGCGAAACGTTCGACCAGCGTGGTCAGTCAAAACAAACATAAACCTCGCA
AGCCATCACAGCACTGCCAGTCAAACACCTCTGAAATAAATCCAAATCAT
AGAGTTTCAAGCTAAGTAGCTGAAAGAAGATTGGAAGATAGCTGCCCCCA
ATAGTAAGTTAAATTTTTTAATCTGCGAACCTAGATGGGGGTTCAGTGTT
CGTTTTTTTGAGGTTGCTCGATTGTCTTGGTCAAAACAATTTTGGAAAGC
TAACTATCTCGAGTTAGGTACTGAAATCACCTATACTCGCACAGTTATAG
ACCTAACTCTTCGTACAAAAATTACAGGAAACGCATATTTGGACTTTTTA
CCCTATGCTGCACGCAAGCAGTTAAGCTAAAGTCTCGCAAAAGCGGGACA
AAAATCAGTTTTTTGCAGTTTGCAAAAAAGAAGTTTTAACATGATGACAT
CCTAACTAATGCGACGACCTACCGTGAGATCAGGTAACTTGCATCAGTGG
AGGCAAACATGCANTGACATCCTAACTAATGTGACGACCTACCGTGAGAT
CAGGTAACTTGCATCAGTGAGGGCAAACATGCATAGCCCTCAAATGAATG
ACCTGTCTGGTCATTAAAATCAACTACGCAGCTTCGTTCGTAGCTCTACT
CTACCATTTTTGTTTTGATTTAACTTTTGACTTGAAACTAGCGAAAAAAG
TGACCCTGAATGGGACTAAAATTCCAAAATGTTCTCAAATTTTCTACTTT
TTCCCCAAATTTTCCAAAAATAAGCACCCTACGAGGGACTGATTTTTCTA
TTTTGGTGTTTTTTGCGATCCTACCTGGGACTCGTGGAGGTTAAAAAAGG
TACCCTGACCAGCGGAGCATCCCCGTAACCCACGGTTAGTGTAAAATGCA
GGTCACAGGTCACAGGTCAGTAATGACATTGCAGAGGAAAATGTTTGGAA
AACACAAAGAATTATCAAAAACATAATTCTCAAGCAATTTCATCCATATA
AAACCATTTCAAACATCAAAATTTAACAANNNNNNNNNNNNNNNNNNNNN
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NATTCAAGCCACTCAAGACTTTTTTCATAAATTCGAAAGTTGGATGGCAA
AACTGTCGATGAATTTGTTTGGCTGCATGCGTTTTTTGCTCTCTGGACAT
TTCTTTGACGGAAAACATAACATCAACTACTTCAACGGGAAATCCAGGTT
GAATATTAATACACCAGTGACCAGACGGAGCATTAAACAGCTCTACATTG
TTCTTAACCGAATTTATTGTAATTTCTGCAGTGTCATCACCTGTATTTAT
CAAAACGTAACCCCTAAGAGCTCTTCAAACTGAGCAAAAAATGTTTTATC
AAATTCTCAACTTTTCTAGATCAAAAGTTATAGACGATTTTGCGGTAAAA
GAGTGCTATAATTTTGCATAAATTATGCAGATTGTGGGGAAATTCAAGAA
GTTTATTTCGCGTTGGTGCAATGCAACATGCTCCATCCCACCGACACAAG
AATCTTGAATTTGAATTGTATGCAAAAATACAGGAACCAAAAAGCCGTGG
TTGGATTTTGTTGAAAAATATGCAAAACATATGCAAGTTTACACAAAGAT
TAAAAAGACAACAAAGCATCTTATAAAGAAATTTTATAATCATTAGAACA
ATAAAAGATGGAATTTTTTAATCCAAAAAGAAATATTTACAGAACAAAAA
AAGCCTTTTAGAAATTTGTTCTTAAAGACAGAGCATATTCTGTTTTCATG
CAATTATAAAATTCCACAAAGACGGAGTACACACATCAAACTTTTAAAAC
ACGCAAACTGAAAACAGTAATTATGACGTCACACATTCTTTCCTGTGTAA
GAAAATATTAAATCCCCCGTTTTGATGTATACAAGGTCAAGCCGGTTCAG
ATCAATATTTTGATTTGATCATTTGACGGTTCTATTCCCAGGAGAATAAT
TTACCGTCAGCCCATTAAGGATTATATTTGTATCTTCCCTGGAGATTTTT
CAGCTTGAATTTATTTCTAATGTTATGGTTTTTGAACTGCTTGTTCTAAG
AAATGAGAGAATATGATTATTTTTAATTTTCAAGAGAAGCAAATTTAATC
TTTCTTCTACAAGATTACACTTTAATATAATGCCAAATTGTGCATGTAAA
TTTTAAATTAATACTTTCTCTTTGCATAGGTTTTGCATATTTTCAATGCA
ATCTCACCACGGCAATTCGGCCACCATAATTTTTGCATACGATTCAATAT
TGGGGATGGAAAGGCGAAAAGGTCTATTGAATCTACACAAAAAAATTTGA
AATAAATTTTTGGCAGAATGATCCTAACCCCTTCAGAACCCGTTAAAAAA
ATTTCCCAGCTTTGTCAGCCTGGCAAAATCTGGTTTTGAAGTCCCAAGGA
ACCACATAATGAGAGAATAATGGTTGAATTGTAAAAGCAAGGTCATTTTA
GCTCCCAAAATTTTACAGGCAAAACTCTGAACCGATAAATAGGTAAAAAT
TCACCATTAAGATGAAATCAATGGAAAGGAGGTGTAAAATTCTGAGCATA
AAAGTGTGCTACAAAAAGCCTTATACTCACTCAAACACACCAAGATATAA
AGATCTATATGCTTTAGTGTTTAGTCAAAATTTGAAATGAATCATATACT
CTATTTGAACTCCAAGTGGGTGCAATGCGATCTTGATTTTGAATATATCT
GAGTTAGTGCAGAAATTGTATTTATTATGTTAGAGGTAAGTATATGGCGC
ATTTTTTCTTATAGATGACATATTGGAAGAGATATTACAGACAGATAGCT
GAAATTAATATTTTCCCCAATCATCAAAACAAGAGATTCCATTCTTCTAC
CTCATCTGAAGACGAAAGCATATTAGCAATTTGTACTGAAAGAAAACTAA
GGTATATTTTTTATCTGCGCTAATTATTGAATTTGAATTATTTTATTGTT
TTCACCCTGTTTTCACCAGGCAAAACTTCCTTTTAAACCTACTTTACATC
AATTCTATATTCTAAAACTATTTTAACGACAAGGGGACATTCAAAAAGTA
TGTTCGTCCATTTTCATTTATTTTTAGACCCCCTCTCCACATCTGTTCGT
TGTCTACGTGTCAATGCTACTTGTCCTGTATTATATCAAAAACTGTCCTA
TTGTCATTTTTTTTATAGAAGTGTGAAAGTTGTATGTATAAGAAAGTATT
GTTTTGGTCATGTCTACTGAGGATTTAGTATTACTTTGTTTTCTTAGAGA
TAAGAACATAGCTGCAGATCCAAACTTGTTTTTTGACATCGAAAGCTACG
ACGAAGAATTCTATATTGTCAAAACTGTTGACTCAAGCCATCACGAGGTA
AGATAAATATTCAAGATCATCAGTTATTCAGTTTATTTCTTAAATTTTAC
AGCCTAATAATGAATTCAAAACTATTGCTGAAACAATGATTGTGAAGAAG
ATTTATAAATTTAGTTTAAAAAGCAACATATGTATTTCAATCCTATTGGC
GGGACTCCTCAGTAGGTATACTTCCTATTCTCAGGTGTATCTTTCAAACT
GTTTTACAAATATATTTCTTTCTTTGTTGTTTAACTGGTCTAACTAAAAA
AAAAACCTGAGAGATTTTATAAGCGTGTTCGAAATGTCAATGGTCTGTTG
ACTACATTTTTAGATCATTCCACCTGACCAGTGTATCTGTAAAGAAAAGA
AGTCATTTGAATCAAAACCAAAAGTCACTCCGACTGACGAAAAAGAGGCT
GAAGAAATTCGAGAAGAAGAAGGAATGAACAAAACAATGAAGAAGATAAA
CGCATTCCAATCACACTTACACGAAAGTTGTATAGAAGAGTTGGAAGAGA
TGAAAAAGTTTGGGTTACCAACTTACTTTTTGAATTCACCTTGGGATAAT
GAACCAGAAGAGGAGGAAAGAAAAAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_009141	XLOC_009141	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00016378-exon-sc0000233-1575043694:336091..336343	TCONS_00016378-exon-sc0000233-1575043694:336091..336343	Clytia hemisphaerica	exon
TCONS_00016378-exon-sc0000233-1575043694:330543..330679	TCONS_00016378-exon-sc0000233-1575043694:330543..330679	Clytia hemisphaerica	exon
TCONS_00016378-exon-sc0000233-1575043694:330097..330196	TCONS_00016378-exon-sc0000233-1575043694:330097..330196	Clytia hemisphaerica	exon
TCONS_00016378-exon-sc0000233-1575043694:329518..329780	TCONS_00016378-exon-sc0000233-1575043694:329518..329780	Clytia hemisphaerica	exon
TCONS_00016378-exon-sc0000233-1510915933:336091..336343	TCONS_00016378-exon-sc0000233-1510915933:336091..336343	Clytia hemisphaerica	exon
TCONS_00016378-exon-sc0000233-1510915933:330543..330679	TCONS_00016378-exon-sc0000233-1510915933:330543..330679	Clytia hemisphaerica	exon
TCONS_00016378-exon-sc0000233-1510915933:330097..330196	TCONS_00016378-exon-sc0000233-1510915933:330097..330196	Clytia hemisphaerica	exon
TCONS_00016378-exon-sc0000233-1510915933:329518..329780	TCONS_00016378-exon-sc0000233-1510915933:329518..329780	Clytia hemisphaerica	exon
TCONS_00016378-exon-sc0000233-1491911889:336091..336343	TCONS_00016378-exon-sc0000233-1491911889:336091..336343	Clytia hemisphaerica	exon
TCONS_00016378-exon-sc0000233-1491911889:330543..330679	TCONS_00016378-exon-sc0000233-1491911889:330543..330679	Clytia hemisphaerica	exon
TCONS_00016378-exon-sc0000233-1491911889:330097..330196	TCONS_00016378-exon-sc0000233-1491911889:330097..330196	Clytia hemisphaerica	exon
TCONS_00016378-exon-sc0000233-1491911889:329518..329780	TCONS_00016378-exon-sc0000233-1491911889:329518..329780	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000233	supercontig	sc0000233:329518..336343 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.06095	2.27753	1.11966	0.93915	16.1824	15.22	9.72614	8.30578	3.09009	6.53616	5.0119	4.12838	4.69053	3.73122	4.6966	4.46488	4.56253	5.53207	1.64749	1.28974	3.33516	2.76804	5.52956	6.67164	7.42212	9.56115	1.0731	1.34614	5.09583	4.53511

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00016378 vs. Swiss-Prot (Human)

BLAST of TCONS_00016378 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00016378 (transcript) - C. hemisphaerica