TCONS_00016373 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016373
Unique NameTCONS_00016373
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1323

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016373 ID=TCONS_00016373|Name=TCONS_00016373|organism=Clytia hemisphaerica|type=transcript|length=1323bp
TGCAAATCAAGTTCATTGTGACTTCATTGGTGCCCTATTTATAGGTGTca
gaatttgcaaaaaaatcattcagTTTTCAAGAAAGCGAGTGAATAGCAAG
TCATCAGAAACACTACAAACAACAAGATGTGGATCAAAGTCTGCTTCAGT
TTGCTTTTGTTCTATACAGCAACTGGTGTATCGACATGTAAAAATTCATG
TGCCAGACAGCCTAATTGGTGTGGCCACGCTGGTGCTACCTTTACATTCA
TGGATTGCGACAATGACGGAAAACTTGATCCTGTATGTTCAGACAAAAAT
GGAAACTTTGGTGTCATCGGATTGACAAATGGATGCAGAGGAAAATGGCC
CAAAGAAACATGCAAAAACCCCAAAGGAAACATTTGTTCTCGATCAAAAG
GATGGTGTGGTCATGCAGGAGCAACTTATTTCTACCAAGATTGTGATGGC
GACGGTATCTTGGATCCAATTTGTTCTGACACCAATGGTAACTTGGGAAT
CAtcaaaagctctcaaaaatgtAAATCCGAATGGCCACATGCAGTATGCA
GAGCTAAAGGAGCAACATGCCTTTCTTGCAGAAGACACAAAGGTTGGTGC
AGTCATGCTAAATCTGTTTACACCTTGATGGATTGTGACGGTGACGGTAC
TCCTGATCCAGTTTGCTCAGATACCAATGGAAATCTCGGTGTCATCCAAA
GTTCCAAAGGATGCCCTTCAGTTTGGCCCAAAGCTTCCTGTACAACCAAG
AAAGGCAAAGTGTGTGCTCGACCAAAAggatggtgcggtcatgatggaTC
AACATTTGTCTTCAAGGATTGTGATGGAGATGGAATCCCAGACCCTGTCT
GCAGTGACAAGAATGGAAATCTTGGAGTACGCAAAAGCTCCAAAGGATGC
AGCGACAGCTGGCCAAACGACGTTTGCACCACTAaataaattagataaaa
aaacaTTAACAACACAGTTATATTACACCTTTATACTGTGgtttaaaagt
ttttctcatATGCCTGATTTTGTATTTTACGAGAAAGTTATACcttattt
cttgaaattttgtagAATAGACGATTATAAGACAAAGTTAACATTCAACA
TTGTTGTggaaacagaaaaatattttttttggtagATTATTACAggggag
aaaaaataaaaaaacgtaaatataaaatttcttttttcccacCGAACCTT
GTTCTACCGTGAATTGGTAAAATAAATAAGAGACTATTTGAATTATATGA
CAACAGCCCTTTGCGATTGTGAAACTTATTCACTAAAACAGGTTAAAAAG
GGAAAAAGTTCGGCATAAAtcac
Run BLAST on NCBI

transcript from alignment at sc0000233:293700..295022-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016373 ID=TCONS_00016373|Name=TCONS_00016373|organism=Clytia hemisphaerica|type=transcript|length=1323bp|location=Sequence derived from alignment at sc0000233:293700..295022- (Clytia hemisphaerica)
TGCAAATCAAGTTCATTGTGACTTCATTGGTGCCCTATTTATAGGTGTCA
GAATTTGCAAAAAAATCATTCAGTTTTCAAGAAAGCGAGTGAATAGCAAG
TCATCAGAAACACTACAAACAACAAGATGTGGATCAAAGTCTGCTTCAGT
TTGCTTTTGTTCTATACAGCAACTGGTGTATCGACATGTAAAAATTCATG
TGCCAGACAGCCTAATTGGTGTGGCCACGCTGGTGCTACCTTTACATTCA
TGGATTGCGACAATGACGGAAAACTTGATCCTGTATGTTCAGACAAAAAT
GGAAACTTTGGTGTCATCGGATTGACAAATGGATGCAGAGGAAAATGGCC
CAAAGAAACATGCAAAAACCCCAAAGGAAACATTTGTTCTCGATCAAAAG
GATGGTGTGGTCATGCAGGAGCAACTTATTTCTACCAAGATTGTGATGGC
GACGGTATCTTGGATCCAATTTGTTCTGACACCAATGGTAACTTGGGAAT
CATCAAAAGCTCTCAAAAATGTAAATCCGAATGGCCACATGCAGTATGCA
GAGCTAAAGGAGCAACATGCCTTTCTTGCAGAAGACACAAAGGTTGGTGC
AGTCATGCTAAATCTGTTTACACCTTGATGGATTGTGACGGTGACGGTAC
TCCTGATCCAGTTTGCTCAGATACCAATGGAAATCTCGGTGTCATCCAAA
GTTCCAAAGGATGCCCTTCAGTTTGGCCCAAAGCTTCCTGTACAACCAAG
AAAGGCAAAGTGTGTGCTCGACCAAAAGGATGGTGCGGTCATGATGGATC
AACATTTGTCTTCAAGGATTGTGATGGAGATGGAATCCCAGACCCTGTCT
GCAGTGACAAGAATGGAAATCTTGGAGTACGCAAAAGCTCCAAAGGATGC
AGCGACAGCTGGCCAAACGACGTTTGCACCACTAAATAAATTAGATAAAA
AAACATTAACAACACAGTTATATTACACCTTTATACTGTGGTTTAAAAGT
TTTTCTCATATGCCTGATTTTGTATTTTACGAGAAAGTTATACCTTATTT
CTTGAAATTTTGTAGAATAGACGATTATAAGACAAAGTTAACATTCAACA
TTGTTGTGGAAACAGAAAAATATTTTTTTTGGTAGATTATTACAGGGGAG
AAAAAATAAAAAAACGTAAATATAAAATTTCTTTTTTCCCACCGAACCTT
GTTCTACCGTGAATTGGTAAAATAAATAAGAGACTATTTGAATTATATGA
CAACAGCCCTTTGCGATTGTGAAACTTATTCACTAAAACAGGTTAAAAAG
GGAAAAAGTTCGGCATAAATCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009140XLOC_009140Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016373-exon-sc0000233-1575043694:293700..295022TCONS_00016373-exon-sc0000233-1575043694:293700..295022Clytia hemisphaericaexon
TCONS_00016373-exon-sc0000233-1510915933:293700..295022TCONS_00016373-exon-sc0000233-1510915933:293700..295022Clytia hemisphaericaexon
TCONS_00016373-exon-sc0000233-1491911889:293700..295022TCONS_00016373-exon-sc0000233-1491911889:293700..295022Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000233supercontigsc0000233:293700..295022 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.65478	1.5592	0	0.316547	0.101918	0.169689	10.6924	13.0718	630.927	229.009	1246.61	1318	922.867	843.927	2367.46	2531.26	809.723	672.702	276.476	381.671	0.352724	0.124258	0.504984	1.06928	0	0	0.131006	0.113819	1.01457	0.978381
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016373 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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