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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016359 ID=TCONS_00016359|Name=TCONS_00016359|organism=Clytia hemisphaerica|type=transcript|length=4426bpRun BLAST on NCBI transcript from alignment at sc0000233:79816..223450- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016359 ID=TCONS_00016359|Name=TCONS_00016359|organism=Clytia hemisphaerica|type=transcript|length=143635bp|location=Sequence derived from alignment at sc0000233:79816..223450- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00016359 vs. Swiss-Prot (Human)
Match: DYH7 (Dynein heavy chain 7, axonemal OS=Homo sapiens GN=DNAH7 PE=1 SV=2) HSP 1 Score: 181.8 bits (460), Expect = 1.113e-45 Identity = 253/1111 (22.77%), Postives = 457/1111 (41.13%), Query Frame = 2
Query: 1124 SFVLDDVTLDHAHNLYSALQTANGHCLLISDKSHGRRKMINIVSKLMRVEVFQVPPPNSTDSITIENTFNVIKDACNAAGLNGKPVILSIQGNMSDE-VDQCLSALLCDGFCPGFYEPSEIALVITQHLPGGHLNNVRKINNIS--QLVERFFQRVRNNLQIVVGIKRSEMCDF----LTRFPTILHKFHLVDFYGNNDAHFWSAFSTRWLIENMTGEDIDAPNLSELIGTVHHVTKQQLNETCGAEADRY--ISPLKLMECLQIFKKLFHSIREVSQKRSAYLNKAMAKVFQAKEDIRKSQDEIDRLQPLLETA-RSIAEDAEKVMKSAQESYLTVKKSCEDQYTEIERLKIPCEQLRKETNQDFEQLSPLFQAALEALNMLSKGDIVEMKSYPAPPEGVKLVAILLCVLFD-----VPES----------YKEAILLLRSDNFIQRLQFLDKDNISDSAYRKLCK--FVNDPETQPTVVASKSRAAEQLCLWLRGIHSYCTIYRQLQPKKQSL--KEAELKIA-----KAESKLCEMKLRTSDLRDLLEKEIVNYKGKMKIVKGLEKKQQISKDALKYIETLLNTMSPFTDHWESEVQTIHETQENLSTNALTLAISSIYLGMVPSNEQQNLKTKWRQELSKDSIDFLDDKSIRTLLETYLTSEREQYKWTKIVDPVDQTLSTTLLLSRMCMNYGSRCWPLFLDPFDHSEDWVKMMERSYEEQENVKRIMYDDTNERVMVVYGDDVNLENKLLKAVQSGLIMLIKRIECXXXXXXXXXXXXRGSIQNGSLTVK--GEQITCSPNFKLYMSTNLSMEGFLQEELENPLHKTII-YQLQPDFIGLQQHALKLIILSESNELEAGFHRFRNDIYYLAREKESTNKQVLSKIANMEGSFLEDKKLFENMGFEREHLWLVQERIFESENLLNNIKATRQEYLPIATHVAKIYFILSKLKSVHPSYRFDFNVITESLTRALQQNVSVMSNGIDS---AAHAEDVCRSFTKAVNESISCALFAEHNYLF---LILTILEKSSSLMDDLLNVIITSNTGPKNKEEDNEGGNTESKLDWITDEAWNNLKSLCKLKPFKELLESLQTRSEEWKEYFKVL 4327
+ VL ++H + L+ H LL+ GR+ + + + + VFQV D+ VI C + G V L + +E + +S LL G P + E + + + K + S L F R+ L +V+ + S + D L +FP +++ +D++ + A ++R+L E E+I + + H + L+++ E RY ++P +E + FK L R K + K+ A + Q E++ L P L+ A + + E + K + E T K D+ E+ + + ++ E + D P+ ++AL AL+ L+ DI +KS +PP GVKLV +C+L +P+ + A LL F+Q L DKDNI AY + + ++ +P+ P + + S AAE LC W+ + SY + + + PKK L E ELKIA K ++ L E++ + + L+D LE +N + K LE + + L+ E L+ + W + + NL+ + L + YLG S +QN +W I DD S+ L +T W P D S ++ + MN +R WPL +DP + W+K ME++ + V+ + + L +Q G +L++ + D L LL + Q GS ++ I +P+F+ Y++T L +L E + T++ + + P+ G+Q L +++ E +LE R+ + ++L +++ EG+ LED+ + + + + ++ +E I TR Y PIA H + ++F L+ L ++ P Y++ SLT + + + N S A + + FT ++ ++ +LF + LF L + +L ++ ++T G DN N + W+ ++W+ + L L FK + + WK+ + L
Sbjct: 2312 NLVLFRFAIEHISRISRILKQPRSHALLVGVGGSGRQSVTRLAAHMADYSVFQVEISKGYDTTEWHEDLKVILRKCAEGEMQG--VFLFTDTQIKEESFLEDVSNLLNAGEIPNLFALDEKQEICDKMRQLDRQRDKTKQTDGSPIALFNMFIDHCRSQLHVVLAM--SPIGDAFRNRLRKFPALVN-CCTIDWFQSWPEDALQAVASRFLEEIEMSEEIRDGCID--MCKSFHTSTIDLSKSFFVELQRYNYVTPTSYLELISTFKLLLEKKRSEVMKMKKRYEVGLEKLDSASSQVATMQMELEALHPQLKVASKEVDEMMIMIEKESVEVAKTEKIVKADETIANEQ-AMASKAIKDECDADLAGALPILESALAALDTLTAQDITVVKSMKSPPAGVKLVMEAICILKGIKADKIPDPTGSGKKIEDFWGPAKRLLGDMRFLQSLHEYDKDNIP-PAYMNIIRKNYIPNPDFVPEKIRNASTAAEGLCKWVIAMDSYDKVAKIVAPKKIKLAAAEGELKIAMDGLRKKQAALKEVQDKLARLQDTLE---LNKQKK----ADLENQVDLCSKKLERAEQLIGGLGGEKTRWSHTALELGQLYINLTGDILISSGVVAYLGAFTSTYRQNQTKEWTTLCKGRDIPCSDDCSLMGTLGEAVTIR----TWNIAGLPSD---SFSIDNGIIIMN--ARRWPLMIDPQSQANKWIKNMEKA----------------NSLYVIKLSEPDYVRTLENCIQFGTPVLLENVGEELDPILEPLLLKQTFKQGGSTCIRLGDSTIEYAPDFRFYITTKLRNPHYLP---ETSVKVTLLNFMITPE--GMQDQLLGIVVAQERPDLEEEKQALILQGAENKRQLKEIEDKILEVLSSSEGNILEDETAIKILSSSKALANEISQKQEVAEETEKKIDTTRMGYRPIAIHSSILFFSLADLANIEPMYQY-------SLTWFINLFILSIENSEKSEILAKRLQILKDHFTYSLYVNVCRSLFEKDKLLFSFCLTINLLLHERAINKAEWRFLLTGGIG-----LDNPYANLCT---WLPQKSWDEICRLDDLPAFKTIRREFMRLKDGWKKVYDSL 3361 The following BLAST results are available for this feature:
BLAST of TCONS_00016359 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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