TCONS_00016339 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016339
Unique NameTCONS_00016339
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length280

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016339 ID=TCONS_00016339|Name=TCONS_00016339|organism=Clytia hemisphaerica|type=transcript|length=280bp
ctgaaaacagctgaaaatggccattttttgCCACAAGTTTCTCCTCCGAA
AATgcggttttaaaaattttgtgctggatttaatccgattaaagtagctA
TTTTCAGCGCGCAGACAAAACCTGACTTATCATCAGACTTCAATTAACCT
TTAACAGATCAGATAACAGATGCTTTCAAAGGTACAAACATTTGCATCGT
CACCGAAGAGGTCCACCGCAAAAAGTTTTCCATAAAAGGAAAACAACGCC
TGGATCAACAAAATTGGATTACTGTCAGAG
Run BLAST on NCBI

transcript from alignment at sc0000232:216624..216903

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016339 ID=TCONS_00016339|Name=TCONS_00016339|organism=Clytia hemisphaerica|type=transcript|length=280bp|location=Sequence derived from alignment at sc0000232:216624..216903 (Clytia hemisphaerica)
CTCTGACAGTAATCCAATTTTGTTGATCCAGGCGTTGTTTTCCTTTTATG
GAAAACTTTTTGCGGTGGACCTCTTCGGTGACGATGCAAATGTTTGTACC
TTTGAAAGCATCTGTTATCTGATCTGTTAAAGGTTAATTGAAGTCTGATG
ATAAGTCAGGTTTTGTCTGCGCGCTGAAAATagctactttaatcggatta
aatccagcacaaaatttttaaaaccgcATTTTCGGAGGAGAAACTTGTGG
caaaaaatggccattttcagctgttttcag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009121XLOC_009121Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016339-exon-sc0000232-1491911889:216624..216903TCONS_00016339-exon-sc0000232-1491911889:216624..216903Clytia hemisphaericaexon
TCONS_00016339-exon-sc0000232-1510915933:216624..216903TCONS_00016339-exon-sc0000232-1510915933:216624..216903Clytia hemisphaericaexon
TCONS_00016339-exon-sc0000232-1575043694:216624..216903TCONS_00016339-exon-sc0000232-1575043694:216624..216903Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000232supercontigsc0000232:216624..216903 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.701549	0.793031	0.559751	0	2.66674	0.526824	1.33713	3.57019	1.75671	0	1.32581	1.53234	1.31516	2.14294	2.26241	2.45326	0.514511	0.380388	0.525526	0.997787	3.17316	1.19912	0.0145783	0.535246	2.56507	1.42113	0	0.723451	1.09742	2.64562
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016339 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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