TCONS_00016336 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016336
Unique NameTCONS_00016336
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length417

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016336 ID=TCONS_00016336|Name=TCONS_00016336|organism=Clytia hemisphaerica|type=transcript|length=417bp
TACGCCCTAAAAACCGTCTTCTGTATATGTATTAAGAAATTGAAAGCCCT
TTATTTCAAGCACAAGCACGGTCTTGCCGCCCAAAGCTCAAGAAGATCAA
TGAACAATCGTAAGATGAGATAAAAAAACTCATCGAAATCAACTGAGAGC
AAAGGTCAATTTTGGTATCAACTCTTTCAATTGGAGACAAGGGTTTCAAG
ATCACCAAACAACCTTTCTGGGACTTAATCAAGATTCGATATGATTAATC
CTATGGTGAATCGTCTTCAAAACGTTTTCTAGTGTAAGAGGGAGTCATTC
AACTTTGAAGGCGCTTTGGTGTGTAACAAAAGAAGGATTTGTCACGCTCG
TCACGATTCCATCCGCGAAATCAATGGATTTATACTTGCACAATTTTGTA
AAGAAATGAGGGTCGAG
Run BLAST on NCBI

transcript from alignment at sc0000232:186089..186505

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016336 ID=TCONS_00016336|Name=TCONS_00016336|organism=Clytia hemisphaerica|type=transcript|length=417bp|location=Sequence derived from alignment at sc0000232:186089..186505 (Clytia hemisphaerica)
CTCGACCCTCATTTCTTTACAAAATTGTGCAAGTATAAATCCATTGATTT
CGCGGATGGAATCGTGACGAGCGTGACAAATCCTTCTTTTGTTACACACC
AAAGCGCCTTCAAAGTTGAATGACTCCCTCTTACACTAGAAAACGTTTTG
AAGACGATTCACCATAGGATTAATCATATCGAATCTTGATTAAGTCCCAG
AAAGGTTGTTTGGTGATCTTGAAACCCTTGTCTCCAATTGAAAGAGTTGA
TACCAAAATTGACCTTTGCTCTCAGTTGATTTCGATGAGTTTTTTTATCT
CATCTTACGATTGTTCATTGATCTTCTTGAGCTTTGGGCGGCAAGACCGT
GCTTGTGCTTGAAATAAAGGGCTTTCAATTTCTTAATACATATACAGAAG
ACGGTTTTTAGGGCGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009118XLOC_009118Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016336-exon-sc0000232-1491911889:186089..186505TCONS_00016336-exon-sc0000232-1491911889:186089..186505Clytia hemisphaericaexon
TCONS_00016336-exon-sc0000232-1510915933:186089..186505TCONS_00016336-exon-sc0000232-1510915933:186089..186505Clytia hemisphaericaexon
TCONS_00016336-exon-sc0000232-1575043694:186089..186505TCONS_00016336-exon-sc0000232-1575043694:186089..186505Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000232supercontigsc0000232:186089..186505 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.230018	0	0.438579	1.02648	0.507332	0	0.554024	0.908768	0	0.235613	0.387412	0.128059	0.899206	0.13124	0	0.189734	0.491141	0	0	0	0.183129	0.326877	0.23388	0	0.29494	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016336 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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