TCONS_00016326 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016326
Unique NameTCONS_00016326
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length334

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016326 ID=TCONS_00016326|Name=TCONS_00016326|organism=Clytia hemisphaerica|type=transcript|length=334bp
TATAAACGGAAGCACGGTTACTGCTTTTACGGAAAATCATCACGTATAAT
TTGTAAACATAGATCAACATAAAATGTTCAATGTTGAGTGCTAAACCCAT
CATAAGTAGCAAAAGTGATCTCGAATGTTCACTAGATAGAGCAAGATACA
TTCCAGCTGACGAAATGATTATGATACTTGACGTAAAAGAAGCGTAGATG
ACGTAAACGGTTTCACGGTAATGCGACGGGAGCTTACGTGCACGTATCCC
TTGAACGGCGTTTGTGATGATGATGAGTAAGATAAAACCGTACTGAACAA
GCACAGTTAGGTTATTGCTACAAAAATATTCACG
Run BLAST on NCBI

protein sequence of TCONS_00016326-protein

>TCONS_00016326-protein ID=TCONS_00016326-protein|Name=TCONS_00016326-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
REYFCSNNLTVLVQYGFILLIIITNAVQGIRARKLPSHYRETVYVIYASF
TSSIIIISSAGMYLALSSEHSRSLLLLMMGLALNIEHFMLIYVYKLYVMI
FRKSSNRASVY
Run BLAST on NCBI

transcript from alignment at sc0000232:67727..68060

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016326 ID=TCONS_00016326|Name=TCONS_00016326|organism=Clytia hemisphaerica|type=transcript|length=334bp|location=Sequence derived from alignment at sc0000232:67727..68060 (Clytia hemisphaerica)
CGTGAATATTTTTGTAGCAATAACCTAACTGTGCTTGTTCAGTACGGTTT
TATCTTACTCATCATCATCACAAACGCCGTTCAAGGGATACGTGCACGTA
AGCTCCCGTCGCATTACCGTGAAACCGTTTACGTCATCTACGCTTCTTTT
ACGTCAAGTATCATAATCATTTCGTCAGCTGGAATGTATCTTGCTCTATC
TAGTGAACATTCGAGATCACTTTTGCTACTTATGATGGGTTTAGCACTCA
ACATTGAACATTTTATGTTGATCTATGTTTACAAATTATACGTGATGATT
TTCCGTAAAAGCAGTAACCGTGCTTCCGTTTATA

Coding sequence (CDS) from alignment at sc0000232:67727..68060

>TCONS_00016326 ID=TCONS_00016326|Name=TCONS_00016326|organism=Clytia hemisphaerica|type=CDS|length=333bp|location=Sequence derived from alignment at sc0000232:67727..68060 (Clytia hemisphaerica)
CGTGAATATTTTTGTAGCAATAACCTAACTGTGCTTGTTCAGTACGGTTT
TATCTTACTCATCATCATCACAAACGCCGTTCAAGGGATACGTGCACGTA
AGCTCCCGTCGCATTACCGTGAAACCGTTTACGTCATCTACGCTTCTTTT
ACGTCAAGTATCATAATCATTTCGTCAGCTGGAATGTATCTTGCTCTATC
TAGTGAACATTCGAGATCACTTTTGCTACTTATGATGGGTTTAGCACTCA
ACATTGAACATTTTATGTTGATCTATGTTTACAAATTATACGTGATGATT
TTCCGTAAAAGCAGTAACCGTGCTTCCGTTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009108XLOC_009108Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016326-exon-sc0000232-1491911889:67727..68060TCONS_00016326-exon-sc0000232-1491911889:67727..68060Clytia hemisphaericaexon
TCONS_00016326-exon-sc0000232-1510915933:67727..68060TCONS_00016326-exon-sc0000232-1510915933:67727..68060Clytia hemisphaericaexon
TCONS_00016326-exon-sc0000232-1575043694:67727..68060TCONS_00016326-exon-sc0000232-1575043694:67727..68060Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016326-proteinTCONS_00016326-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000232supercontigsc0000232:67727..68060 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0.862634	0	0.377516	0	0	0	0.639181	0.21838	0.905111	5.05138	1.92087	0.803087	0	0.295853	0	0.271957	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR017978GPCR_3_C
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016326 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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