TCONS_00016325 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016325
Unique NameTCONS_00016325
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length569

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016325 ID=TCONS_00016325|Name=TCONS_00016325|organism=Clytia hemisphaerica|type=transcript|length=569bp
TGAATATGACCagcactttttggattttaccTAGATTAATTGCAGTTGTG
ATGGAGAAAAGTATTCCAATAACATATGGTCTTGCAAAGCATTTGGATTC
ACTTGGCTGTCCAGTGAAGAGTATTATGGGTACAAAAGTAAGGAAAATAT
GAGTCACCATTTGTACATACGAAATATTCCTCTGTGAAGCACGTACTAAA
GGAGTGTGTTGATTGCGGTGAAAGGTAATGAAAGATATGAAGATGAATAT
TCCATGAATGGTCGCTAGTATGGTATAAATCCAGAATTCTTTTGACTCAC
CAAACGCTAGAAAAATCGAAGTATAAGGATCATAGCACGATTGTCTGTCG
GTTGTACTGAAAAAATGAGCAGAACATGGTAAACATTTTGTattgttctc
aatttttttgtaaaagtgttGTTGACATTTTTGACAATGAAAACCGAAGC
TTCTTGTCCAGTTTTGTTCTTTATAATAAGAGTACACCAACTCGTGTCCC
TTGGTGCATGCTGGGATTGTTAAGTGGCAATACGGCTTCGATTGTAAAGC
TATCGTTGGGCTCAAGTTT
Run BLAST on NCBI

protein sequence of TCONS_00016325-protein

>TCONS_00016325-protein ID=TCONS_00016325-protein|Name=TCONS_00016325-protein|organism=Clytia hemisphaerica|type=polypeptide|length=189bp
NLSPTIALQSKPYCHLTIPACTKGHELVYSYYKEQNWTRSFGFHCQKCQQ
HFYKKIENNTKCLPCSAHFFSTTDRQSCYDPYTSIFLAFGESKEFWIYTI
LATIHGIFIFISFITFHRNQHTPLVRASQRNISYVQMVTHIFLTFVPIIL
FTGQPSESKCFARPYVIGILFSITTAINLGKIQKVLVIF
Run BLAST on NCBI

transcript from alignment at sc0000232:66994..67562

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016325 ID=TCONS_00016325|Name=TCONS_00016325|organism=Clytia hemisphaerica|type=transcript|length=569bp|location=Sequence derived from alignment at sc0000232:66994..67562 (Clytia hemisphaerica)
AAACTTGAGCCCAACGATAGCTTTACAATCGAAGCCGTATTGCCACTTAA
CAATCCCAGCATGCACCAAGGGACACGAGTTGGTGTACTCTTATTATAAA
GAACAAAACTGGACAAGAAGCTTCGGTTTTCATTGTCAAAAATGTCAACa
acacttttacaaaaaaattgagaacaatACAAAATGTTTACCATGTTCTG
CTCATTTTTTCAGTACAACCGACAGACAATCGTGCTATGATCCTTATACT
TCGATTTTTCTAGCGTTTGGTGAGTCAAAAGAATTCTGGATTTATACCAT
ACTAGCGACCATTCATGGAATATTCATCTTCATATCTTTCATTACCTTTC
ACCGCAATCAACACACTCCTTTAGTACGTGCTTCACAGAGGAATATTTCG
TATGTACAAATGGTGACTCATATTTTCCTTACTTTTGTACCCATAATACT
CTTCACTGGACAGCCAAGTGAATCCAAATGCTTTGCAAGACCATATGTTA
TTGGAATACTTTTCTCCATCACAACTGCAATTAATCTAggtaaaatccaa
aaagtgctGGTCATATTCA

Coding sequence (CDS) from alignment at sc0000232:66994..67562

>TCONS_00016325 ID=TCONS_00016325|Name=TCONS_00016325|organism=Clytia hemisphaerica|type=CDS|length=567bp|location=Sequence derived from alignment at sc0000232:66994..67562 (Clytia hemisphaerica)
AACTTGAGCCCAACGATAGCTTTACAATCGAAGCCGTATTGCCACTTAAC
AATCCCAGCATGCACCAAGGGACACGAGTTGGTGTACTCTTATTATAAAG
AACAAAACTGGACAAGAAGCTTCGGTTTTCATTGTCAAAAATGTCAACaa
cacttttacaaaaaaattgagaacaatACAAAATGTTTACCATGTTCTGC
TCATTTTTTCAGTACAACCGACAGACAATCGTGCTATGATCCTTATACTT
CGATTTTTCTAGCGTTTGGTGAGTCAAAAGAATTCTGGATTTATACCATA
CTAGCGACCATTCATGGAATATTCATCTTCATATCTTTCATTACCTTTCA
CCGCAATCAACACACTCCTTTAGTACGTGCTTCACAGAGGAATATTTCGT
ATGTACAAATGGTGACTCATATTTTCCTTACTTTTGTACCCATAATACTC
TTCACTGGACAGCCAAGTGAATCCAAATGCTTTGCAAGACCATATGTTAT
TGGAATACTTTTCTCCATCACAACTGCAATTAATCTAggtaaaatccaaa
aagtgctGGTCATATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009107XLOC_009107Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016325-proteinTCONS_00016325-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016325-exon-sc0000232-1491911889:66994..67562TCONS_00016325-exon-sc0000232-1491911889:66994..67562Clytia hemisphaericaexon
TCONS_00016325-exon-sc0000232-1510915933:66994..67562TCONS_00016325-exon-sc0000232-1510915933:66994..67562Clytia hemisphaericaexon
TCONS_00016325-exon-sc0000232-1575043694:66994..67562TCONS_00016325-exon-sc0000232-1575043694:66994..67562Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000232supercontigsc0000232:66994..67562 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.109166	0	0	0	0.118616	0	0	0	0	0.65542	0.136132	0	0	0.221942	0.303311	2.0952	2.19248	0.476415	0.557709	0.112995	0.205457	0	0.0944311	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011641Tyr-kin_ephrin_A/B_rcpt-like
IPR017978GPCR_3_C
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016325 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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