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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016324 ID=TCONS_00016324|Name=TCONS_00016324|organism=Clytia hemisphaerica|type=transcript|length=1433bp
AATGGAGGCAAACAGTTTATTCTTAATCCTAACTCTCAAATATCTAttag
ttggaaagatatttggtACCATTTTTAATCTCATTGGAACAGACAGGTCG
ATAACAGGTACACCATTTCATTCAATTGAAGGTGCACCACATCAAAAATG
TTTCAGCGTTTGTCATTATTTGTcacaatgtttttcattcgaAGTTTCAC
GATCTTCAACTTTTATCGGCTGTCTGTTTTATCGACAAAGTTATCATGAG
TCAATGACATTGGTTAATAAGCCAGGAGTGAAGTACTACTCACTAAGAAT
TGCTAAAGATTGTACAGAATTGTACCAGCAAGGAAAACGAACCAATGGTG
TATATGAAGTTTATATATTGGGAATCTACCGTAAACAAGTCTACTGTGAG
ATGGAAATGGCTGGAGGAGGCTGGAtggtttttcaaaaaagatttgacgg
TACAGTTGATTTTTATAATGCAACTTGGAATACTTATAAAGAAGGATTTG
GTGAGGCCAGTGGTGAATATTGGCTTGGTAATAAATGGTTAAATCTTCTG
ACAACGTCGGAGAAGTATGATTATTTGGTGTGGGCAAAAGCATTTGACGG
TGATACTcgtataaagaaaatgcttggCGTTCGAGTCGAGAATGAGGATG
AGGGATTCAAAATTACTTTTGAGGAAGAAACTCAAGAATTTTTGCCAAAC
CAATTATACGGTATGGCACATATGAatggaatgaaattttcaaccttGGA
TAACCGGGATGATTTTTGGAGCAATCCTGACGGCTGTGCATTTTATTTTG
GTCCTTGGTGGCACAAAGGATGTCACACTGTAGCAATGAATGGTCAATAT
AACCATGATGGAGTAACTGCCACTTTTGCAAATGGCATTGTCTGGATTAA
TTGGAAAGGACTTTGGACATCATTAAAAGAAAGCCAAATTATGATCAGAC
CTAGATCATTCAATCCATAAGCTATTTTAGCAGTAAATTTGCTGGAAGAA
TCGGGTGATTGACATTGGCTTAAGTTAAAATTTCGCATAAGACTATGTTT
TGTACATTGAGAATCTAGAATTAGCGAGCCAGCCCCTTTTACaccaaatt
tctatcattttcatTGGTTAGAAGACGTACCCTAGTGGACTTTTGTTAAT
TAACAAAAGTCGAATCTCAATACCGTGAAAACGAATCCTACAGTTATgtt
aataatattttaattgtCCATGTACTTAAGTATTTTTCAGCACTGCTTAG
AAGTAGCTTAAGGCGAGACAAATATAAATTATTGTTCTATGGAAAGACCT
TTAGAAAATAATGGGTCAGCAAAAAAACTTATAAAGTCCATCATCTAACT
TTTCCTATTCAATACtaatattttttcgattttggaaagaaatgtcGGTC
GAGCCCGTAGAACAATAAACTAATTTGGTCTGG Run BLAST on NCBI protein sequence of TCONS_00016324-protein >TCONS_00016324-protein ID=TCONS_00016324-protein|Name=TCONS_00016324-protein|organism=Clytia hemisphaerica|type=polypeptide|length=322bp
MEANSLFLILTLKYLLVGKIFGTIFNLIGTDRSITGTPFHSIEGAPHQKC
FSVCHYLSQCFSFEVSRSSTFIGCLFYRQSYHESMTLVNKPGVKYYSLRI
AKDCTELYQQGKRTNGVYEVYILGIYRKQVYCEMEMAGGGWMVFQKRFDG
TVDFYNATWNTYKEGFGEASGEYWLGNKWLNLLTTSEKYDYLVWAKAFDG
DTRIKKMLGVRVENEDEGFKITFEEETQEFLPNQLYGMAHMNGMKFSTLD
NRDDFWSNPDGCAFYFGPWWHKGCHTVAMNGQYNHDGVTATFANGIVWIN
WKGLWTSLKESQIMIRPRSFNP Run BLAST on NCBI transcript from alignment at sc0000232:62471..63903 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016324 ID=TCONS_00016324|Name=TCONS_00016324|organism=Clytia hemisphaerica|type=transcript|length=1433bp|location=Sequence derived from alignment at sc0000232:62471..63903 (Clytia hemisphaerica)
CCAGACCAAATTAGTTTATTGTTCTACGGGCTCGACCgacatttctttcc
aaaatcgaaaaaatattaGTATTGAATAGGAAAAGTTAGATGATGGACTT
TATAAGTTTTTTTGCTGACCCATTATTTTCTAAAGGTCTTTCCATAGAAC
AATAATTTATATTTGTCTCGCCTTAAGCTACTTCTAAGCAGTGCTGAAAA
ATACTTAAGTACATGGacaattaaaatattattaacATAACTGTAGGATT
CGTTTTCACGGTATTGAGATTCGACTTTTGTTAATTAACAAAAGTCCACT
AGGGTACGTCTTCTAACCAatgaaaatgatagaaatttggtGTAAAAGGG
GCTGGCTCGCTAATTCTAGATTCTCAATGTACAAAACATAGTCTTATGCG
AAATTTTAACTTAAGCCAATGTCAATCACCCGATTCTTCCAGCAAATTTA
CTGCTAAAATAGCTTATGGATTGAATGATCTAGGTCTGATCATAATTTGG
CTTTCTTTTAATGATGTCCAAAGTCCTTTCCAATTAATCCAGACAATGCC
ATTTGCAAAAGTGGCAGTTACTCCATCATGGTTATATTGACCATTCATTG
CTACAGTGTGACATCCTTTGTGCCACCAAGGACCAAAATAAAATGCACAG
CCGTCAGGATTGCTCCAAAAATCATCCCGGTTATCCaaggttgaaaattt
cattccatTCATATGTGCCATACCGTATAATTGGTTTGGCAAAAATTCTT
GAGTTTCTTCCTCAAAAGTAATTTTGAATCCCTCATCCTCATTCTCGACT
CGAACGccaagcattttctttatacgAGTATCACCGTCAAATGCTTTTGC
CCACACCAAATAATCATACTTCTCCGACGTTGTCAGAAGATTTAACCATT
TATTACCAAGCCAATATTCACCACTGGCCTCACCAAATCCTTCTTTATAA
GTATTCCAAGTTGCATTATAAAAATCAACTGTAccgtcaaatcttttttg
aaaaaccaTCCAGCCTCCTCCAGCCATTTCCATCTCACAGTAGACTTGTT
TACGGTAGATTCCCAATATATAAACTTCATATACACCATTGGTTCGTTTT
CCTTGCTGGTACAATTCTGTACAATCTTTAGCAATTCTTAGTGAGTAGTA
CTTCACTCCTGGCTTATTAACCAATGTCATTGACTCATGATAACTTTGTC
GATAAAACAGACAGCCGATAAAAGTTGAAGATCGTGAAACTtcgaatgaa
aaacattgtgACAAATAATGACAAACGCTGAAACATTTTTGATGTGGTGC
ACCTTCAATTGAATGAAATGGTGTACCTGTTATCGACCTGTCTGTTCCAA
TGAGATTAAAAATGGTaccaaatatctttccaactaaTAGATATTTGAGA
GTTAGGATTAAGAATAAACTGTTTGCCTCCATT Coding sequence (CDS) from alignment at sc0000232:62471..63903 >TCONS_00016324 ID=TCONS_00016324|Name=TCONS_00016324|organism=Clytia hemisphaerica|type=CDS|length=969bp|location=Sequence derived from alignment at sc0000232:62471..63903 (Clytia hemisphaerica)
TTATGGATTGAATGATCTAGGTCTGATCATAATTTGGCTTTCTTTTAATG
ATGTCCAAAGTCCTTTCCAATTAATCCAGACAATGCCATTTGCAAAAGTG
GCAGTTACTCCATCATGGTTATATTGACCATTCATTGCTACAGTGTGACA
TCCTTTGTGCCACCAAGGACCAAAATAAAATGCACAGCCGTCAGGATTGC
TCCAAAAATCATCCCGGTTATCCaaggttgaaaatttcattccatTCATA
TGTGCCATACCGTATAATTGGTTTGGCAAAAATTCTTGAGTTTCTTCCTC
AAAAGTAATTTTGAATCCCTCATCCTCATTCTCGACTCGAACGccaagca
ttttctttatacgAGTATCACCGTCAAATGCTTTTGCCCACACCAAATAA
TCATACTTCTCCGACGTTGTCAGAAGATTTAACCATTTATTACCAAGCCA
ATATTCACCACTGGCCTCACCAAATCCTTCTTTATAAGTATTCCAAGTTG
CATTATAAAAATCAACTGTAccgtcaaatcttttttgaaaaaccaTCCAG
CCTCCTCCAGCCATTTCCATCTCACAGTAGACTTGTTTACGGTAGATTCC
CAATATATAAACTTCATATACACCATTGGTTCGTTTTCCTTGCTGGTACA
ATTCTGTACAATCTTTAGCAATTCTTAGTGAGTAGTACTTCACTCCTGGC
TTATTAACCAATGTCATTGACTCATGATAACTTTGTCGATAAAACAGACA
GCCGATAAAAGTTGAAGATCGTGAAACTtcgaatgaaaaacattgtgACA
AATAATGACAAACGCTGAAACATTTTTGATGTGGTGCACCTTCAATTGAA
TGAAATGGTGTACCTGTTATCGACCTGTCTGTTCCAATGAGATTAAAAAT
GGTaccaaatatctttccaactaaTAGATATTTGAGAGTTAGGATTAAGA
ATAAACTGTTTGCCTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016324-exon-sc0000232-1491911889:62471..63903 | TCONS_00016324-exon-sc0000232-1491911889:62471..63903 | Clytia hemisphaerica | exon |
| TCONS_00016324-exon-sc0000232-1510915933:62471..63903 | TCONS_00016324-exon-sc0000232-1510915933:62471..63903 | Clytia hemisphaerica | exon |
| TCONS_00016324-exon-sc0000232-1575043694:62471..63903 | TCONS_00016324-exon-sc0000232-1575043694:62471..63903 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000232 | supercontig | sc0000232:62471..63903 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00016324 vs. Swiss-Prot (Human)
Match: FBCD1 (Fibrinogen C domain-containing protein 1 OS=Homo sapiens GN=FIBCD1 PE=1 SV=2) HSP 1 Score: 145.206 bits (365), Expect = 7.031e-38 Identity = 85/225 (37.78%), Postives = 129/225 (57.33%), Query Frame = 2
Query: 305 KDCTELYQQGKRTNGVYEV----YILGIYRKQVYCEMEMAGGGWMVFQKRFDGTVDFYNATWNTYKEGFGEASGEYWLGNKWLNLLTTSEKYDYLVWAKAFDGDTRIKK--MLGV---RVENEDEGFKITFEEETQEFLPNQLYGMAHMNGMKFSTLDNRDDFWSNPDGCAFYFGPWWHKGCHTVAMNGQYNHDGVTATFANGIVWINWKGLWTSLKESQIMIRP 952
+DC ++ G++ +GVY V Y G QVYC+M GGGW VFQ+R DG+V+F+ W+ Y++GFG +GE+WLG K ++ LTT Y+ V + F+ T + GV V+ E++G+ +T ++ + +GM+F+T D RD S + AFY G WW++ CHT +NGQY G A++A+G+ W +W G SLK S++ IRP
Sbjct: 242 RDCLDVLLSGQQDDGVYSVFPTHYPAGF---QVYCDMRTDGGGWTVFQRREDGSVNFFRG-WDAYRDGFGRLTGEHWLGLKRIHALTTQAAYELHVDLEDFENGTAYARYGSFGVGLFSVDPEEDGYPLTVA----DYSGTAGDSLLKHSGMRFTTKD-RDSDHSENNCAAFYRGAWWYRNCHTSNLNGQYLR-GAHASYADGVEWSSWTGWQYSLKFSEMKIRP 456
The following BLAST results are available for this feature:
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