TCONS_00016289 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016289
Unique NameTCONS_00016289
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1122

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016289 ID=TCONS_00016289|Name=TCONS_00016289|organism=Clytia hemisphaerica|type=transcript|length=1122bp
TTTGCAACGTTTACACCCCTGGATTTTCTTAAGATTCGGTCATTCAAGGC
TCAGGATTGTTGTTAAATTAGTCTTATTTTTTCGGCACTTTGAGcgtcat
tgttcttataaaattgttcttagaaaagaaaaagagtgaAGTGGAAATAT
GCCACTTGTCGGAAAGATTGACAATCGTTGAAATCCAGCATCAATATTCC
ACATTAATATTGAAGACGGAATGTTTTGGTTTGATACTTTATTTCTTTTG
AATACAGTTCTCTTGCCATAAGGGTCAAGTGGAATCATTGGAACAGAACA
GgtttcttttctgttttgtaAACTATCAATATAGTAACTCCATCATCAAC
ACTAACACCTTCAAGTTTGCAATGTTTGCCCAAATTAGGGTCATTGAATT
CTTTGTTCAGTGTTCTCTCAAACCCTATTCTTGACTTTTGACAGCAAAAG
ATTTTGTTGCGTTTATCGGTCCAACCTTCGTTTATTACCGGTAGAACTGC
TTGGTTAAGTCGTTTAATTGGAAAATAAGGATATTCAGTGAAGATGAAGT
CCGGTTTCAGTTCGTTTTGACCTAGGGATAGGGGTTCCGGGAGGGGTCCT
TCCCATCTTATCGATATTAACAGCGTGTCTCGAGTGCGATATATGTAACC
ATTGTCCATGTTTTCCCTTAGGAATCTGTACCACGTTTCATATGTACGGA
AATGGTTAGAAGAAgctctttttttcgaaatatattTGTTGATCCCCTCC
ATGAATTTCTCTCCAAGTACTTGTAAATCTTCTGGTGGATGAACCTTCTC
TTTGCTCCATCTGTTATTCAACGAACTAAAAGGTTGATTTCCTGCCCCTT
CAACTTTCACTTTCGTCATTTGGTTGGAATTGCCTTCAAATTTTTCCTTC
AGTGCATTGTTCTCTGCAAGTAAACGTGTATTTTCGTTCTTTAATTCCAT
AATTTCCAGCTTTAAccgaagtttttcattttcatcattaagATCCTCCG
AAGATCCCTTGCTATTGTAGCATTTCTCGTTCAAACCTCCTGAACCGCTC
ATCTTGTACACTCACTACACAGAAAAGTGAAATGAATCTTTCCCTCGTAC
ACAAACAAACTTTCTCTTCTCT
Run BLAST on NCBI

transcript from alignment at sc0000232:39149..40313-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016289 ID=TCONS_00016289|Name=TCONS_00016289|organism=Clytia hemisphaerica|type=transcript|length=1165bp|location=Sequence derived from alignment at sc0000232:39149..40313- (Clytia hemisphaerica)
TTTGCAACGTTTACACCCCTGGATTTTCTTAAGATTCGGTCATTCAAGGC
TCAGGATTGTTGTTAAATTAGTCTTATTTTTTCGGCACTTTGAGCGTCAT
TGTTCTTATAAAATTGTTCTTAGAAAAGAAAAAGAGTGAAGTGGAAATAT
GCCACTTGTCGGAAAGATTGACAATCGTTGAAATCCAGCATCAATATTCC
ACATTAATATTGAAGACGGAATGTTTTGGTTTGATACTTTATTTCTTTTG
AATACAGTTCTCTTGCCATAAGGGTCAAGTGGAATCATTGGAACAGAACA
ATCATTTACAACAAATTTTTTCGTACTGGGCCAGTTATTTTACGGTTTCT
TTTCTGTTTTGTAAACTATCAATATAGTAACTCCATCATCAACACTAACA
CCTTCAAGTTTGCAATGTTTGCCCAAATTAGGGTCATTGAATTCTTTGTT
CAGTGTTCTCTCAAACCCTATTCTTGACTTTTGACAGCAAAAGATTTTGT
TGCGTTTATCGGTCCAACCTTCGTTTATTACCGGTAGAACTGCTTGGTTA
AGTCGTTTAATTGGAAAATAAGGATATTCAGTGAAGATGAAGTCCGGTTT
CAGTTCGTTTTGACCTAGGGATAGGGGTTCCGGGAGGGGTCCTTCCCATC
TTATCGATATTAACAGCGTGTCTCGAGTGCGATATATGTAACCATTGTCC
ATGTTTTCCCTTAGGAATCTGTACCACGTTTCATATGTACGGAAATGGTT
AGAAGAAGCTCTTTTTTTCGAAATATATTTGTTGATCCCCTCCATGAATT
TCTCTCCAAGTACTTGTAAATCTTCTGGTGGATGAACCTTCTCTTTGCTC
CATCTGTTATTCAACGAACTAAAAGGTTGATTTCCTGCCCCTTCAACTTT
CACTTTCGTCATTTGGTTGGAATTGCCTTCAAATTTTTCCTTCAGTGCAT
TGTTCTCTGCAAGTAAACGTGTATTTTCGTTCTTTAATTCCATAATTTCC
AGCTTTAACCGAAGTTTTTCATTTTCATCATTAAGATCCTCCGAAGATCC
CTTGCTATTGTAGCATTTCTCGTTCAAACCTCCTGAACCGCTCATCTTGT
ACACTCACTACACAGAAAAGTGAAATGAATCTTTCCCTCGTACACAAACA
AACTTTCTCTTCTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009092XLOC_009092Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016289-exon-sc0000232-1575043694:40014..40313TCONS_00016289-exon-sc0000232-1575043694:40014..40313Clytia hemisphaericaexon
TCONS_00016289-exon-sc0000232-1575043694:39149..39970TCONS_00016289-exon-sc0000232-1575043694:39149..39970Clytia hemisphaericaexon
TCONS_00016289-exon-sc0000232-1510915933:40014..40313TCONS_00016289-exon-sc0000232-1510915933:40014..40313Clytia hemisphaericaexon
TCONS_00016289-exon-sc0000232-1510915933:39149..39970TCONS_00016289-exon-sc0000232-1510915933:39149..39970Clytia hemisphaericaexon
TCONS_00016289-exon-sc0000232-1491911889:40014..40313TCONS_00016289-exon-sc0000232-1491911889:40014..40313Clytia hemisphaericaexon
TCONS_00016289-exon-sc0000232-1491911889:39149..39970TCONS_00016289-exon-sc0000232-1491911889:39149..39970Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000232supercontigsc0000232:39149..40313 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.233151	0.0757862	0.439975	0.688715	1.10046	1.53215	6.29479	6.31404	7.62964	6.97637	7.63755	6.98746	21.8636	27.6171	27.8682	28.1072	15.9273	20.0325	27.4281	24.1629	9.12964	9.18112	7.88611	8.50633	16.2293	16.346	26.1085	23.8263	2.37214	2.0653
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016289 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top