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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016267 ID=TCONS_00016267|Name=TCONS_00016267|organism=Clytia hemisphaerica|type=transcript|length=2758bp
cgAAGGTTTGTTAATCCAAGATGAATTTATAGTGAACGAAAAATGACAAc
ttcttgttttgaaaagttttatcaGAGATTTCGATCACTGGTTTTGTCTG
TTAAAAGGAAATCAATGCATTAAGTCAAAGTTTTACGGAGAGCGCGGGAG
AGTTGTCGACTTGTTATTTGATCAAACTTTAATGTCAACATTCGGAACAA
AAAGGATACGTTTTATTAAAACAAATATCTCACTCCTCTTATGACActtc
aaatttaataaaaccACCAAGTCAAAACACAGTTCGCAAATAAAACTTCT
TATGTGCTAATGCATGTGTTGTTTTGAGTCTTTATGAGAGAGTGAAGCTG
TTCATAGCGCAAACACACCATCATGAACTATACTCAATTTCTGTACGGTG
GGATTTCAGTGGCTTTCATATTCGTTGTAGGATTTTATCTGACCAATCGG
AACCGTCGTAAAAGTTCCACATCTGACCAAACCAAAGATGAGAAAAGGCG
ACGTCGTAAATCGTCCGCCAAAGAGACGCAAGACGGGGTGACGTTAAACG
GAAGCGTCAGGAAACGCACGGGAGAGAAAAGTAACGGGAATACGGAAACG
TTAACGGTATCACCATCCACAGATCAAGATGAATTCGTGTTACAAACATT
TTGTAAAAGTCCTTTAACTCCACACAAAAGGTTATCTATCCATCATGGAC
ATGATGATTTTGCTTTCGATCGACCACAAGATAAAGACGATGGAAAAATA
CGCCATGTTGATTTTGATGCTATTTCAATTGCAAAGGTCACGGAGGAACA
ATATGCAGAAAGTTTGGATGAAAATAGGAATAGTGAGAAAATGAAAGATG
TGACTATGGGCCAGGGACACGGTAAAGAGGATCAACTTGCTGAAAATGAA
CCTAAAACTGTTGAAAATGAACTAAGAACTGCTGGAAATGAACTAAGAAC
TGCTAAAAATGAAGAAGCAAAGCTTTATAAAGATGTTGATGCTTCAGAGA
TCATCTTTGAAGAGGATTCTCAGTCGAAAGATgaatcaaaaagtgaaaat
tcaGAGGTACTCGTGAAAGTCAATGAATTTGTTGaaagtaatgaaaataa
aattgacgAGAAAGAGAGACAAATTGTTGAAACTGGAATTGTTGAAAGCG
TGACCGAAAATGTTAATAGAGAGCCACCTGCAAAAAGATTAAGCAAATTT
AAACTTTTCGTGTTTCAAGAATATGCAGATCGAATGAGTGATCGTATCTT
ATCGAACACTTCCACGACGTTAGATCAGTTTCATGATTCACAAGTGGATT
TCGCTGAAGACCTCTCGCTCACTGTTTTATATGAAGCCAGGAAAGAAGTT
TATAACAACACGTCCACAAGCACACAGGCTAATGATGAGGAAAATAACAA
TAACGAAAGTACGCTTGACATGATAGCGGATAAACTTGTCGATCaaattt
tatttggaaaaacTTCTCCTCAAAACAAACTTGCTTCAACTGCTACTATA
GAGAAACCACCAGAACCTTCTGAAAAGGCTGCTATTCCCTCTGATTCAAC
AATATCTGTAGAAAATGATAATAAACTTGATGTCGAGGACGGAGCGATCA
AAACGGACTATGGCCGCCCACTTTCTGGTTACGCCAAAAATTTAGCAGAT
TTCCTCGcagatgatgatgaatttgAATTAAGCGATGCAGAGGATGAAGA
TGCAAAAGAGGAAATTGCTAGACCAAGGTCGGTTGGGGCAAGACCAAGCA
GGGAGGGAGCTAGAGACAGTCAAGAGGAGAGTGATTACGAAGACACAGAA
GATGACGAAGACGAGCTTTCGGATGACGAAGATGAAAGTTTTCTTGACGA
GGAAaatgtttcttttgaaaatgacgATGAAAGGACTACAATTTTCGTGA
ATGCTGATTTTGTTGATGATGAGGtagcaaagaaagaaaaattagaaaca
aaagaatttgagaCTCAAAAACTACAAGAACCTTTAGAAACGAGTGCTGT
TGAAAAACAAGAACCTGAGATTAAGATAGAAACGGAAAACAAAAAAGCCA
AAACATCACAATATGCTCCTGCAGTGAAGCGACGTCAAAATAATCGGCGC
ACGAGAGGAGAGCGTCCTAAGAGTTTATATGAACAAGATCTACAGGAGAT
TTTCAACGAGATTAAGATGCCGGCAGACGAGGATGGCGGCAATGATGATC
AAGATGACAGCAAAGAGGTTTTGGAGGATGGTATTAAGCCAGTGTCGGAA
ACGATGAACTTCTTGGAGAATCATATCGAAGCGAAACGAAACATGATGAA
GAgaaacgaagaagaagaagaagaatattTGATGATGGACGAAGATGAAC
ACGTTTCAAACAATTCAAGTGATTTGCTGGGTTgtcaaaaaacaaagaaa
gtctCACAACAAAAACCGCCAGTACTTGGTCGCGCGGCCGTTATTGATTT
TGGATGTGGTGCTCTGAAAGCAGGTCTTTCAGGGGATATCCGCCCGTCAT
GTTACTGTCCGTCAGTCATCGGCGTACCACGGAGGTTTTCTCAGGACGTC
AGTAAAATGAAGAAAGGATTTTACGTTGGTGATGAAGCATGGGAGATTGC
TGGTATGTTGCAGATCGAACATCCAATCAAACAAGAGATTAACAACTGGT
CGGACATCGGCAAcatttttgaatatctttacgaTGAAGAACTGAAGATC
AACAGTAACGAACATCCCATGCTTCTCACTGAACCTGGCCTTACTTCCTC
AACTCATC Run BLAST on NCBI transcript from alignment at sc0000232:367619..372039+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016267 ID=TCONS_00016267|Name=TCONS_00016267|organism=Clytia hemisphaerica|type=transcript|length=4421bp|location=Sequence derived from alignment at sc0000232:367619..372039+ (Clytia hemisphaerica)
cgAAGGTTTGTTAATCCAAGATGAATTTATAGTGAACGAAAAATGACAAc
ttcttgttttgaaaagttttatcaGAGATTTCGATCACTGGTTTTGTCTG
TTAAAAGGAAATCAATGCATTAAGTCAAAGTTTTACGGAGAGCGCGGGAG
AGTTGTCGACTTGTTATTTGATCAAACTTTAATGTCAACATTCGGAACAA
AAAGGATACGTTTTATTAAAACAAATATCTCACTCCTCTTATGACActtc
aaatttaataaaaccACCAAGTCAAAACACAGTTCGCAAATAAAACTTCT
TATGTGCTAATGCATGTGTTGTTTTGAGTCTTTATGAGAGAGTGAAGCTG
TTCATAGCGCAAACACACCATCATGAACTATACTCAATTTCTGTACGGTG
GGATTTCAGTGGCTTTCATATTCGTTGTAGGATTTTATCTGACCAATCGG
AACCGTCGTAAAAGTTCCACATCTGACCAAACCAAAGATGAGAAAAGGCG
ACGTCGTAAATCGTCCGCCAAAGAGACGCAAGACGGGGTGACGTTAAACG
GAAGCGTCAGGAAACGCACGGGAGAGAAAAGTAACGGGAATACGGAAACG
TTAACGGTATCACCATCCACAGATCAAGATGAATTCGTGTTACAAACATT
TTGTAAAAGTCCTTTAACTCCACACAAAAGGTTATCTATCCATCATGGAC
ATGATGATTTTGCTTTCGATCGACCACAAGATAAAGACGATGGAAAAATA
CGCCATGTTGATTTTGATGCTATTTCAATTGCAAAGGTCACGGAGGAACA
ATATGCAGAAAGTTTGGATGAAAATAGGAATAGTGAGAAAATGAAAGATG
TGACTATGGGCCAGGGACACGGTAAAGAGGATCAACTTGCTGAAAATGAA
CCTAAAACTGTTGAAAATGAACTAAGAACTGCTGGAAATGAACTAAGAAC
TGCTAAAAATGAAGAAGCAAAGCTTTATAAAGATGTTGATGCTTCAGAGA
TCATCTTTGAAGAGGATTCTCAGTCGAAAGATgaatcaaaaagtgaaaat
tcaGAGGTACTCGTGAAAGTCAATGAATTTGTTGaaagtaatgaaaataa
aattgacgAGAAAGAGAGACAAATTGTTGAAACTGGAATTGTTGAAAGCG
TGACCGAAAATGTTAATAGAGAGCCACCTGCAAAAAGATTAAGCAAATTT
AAACTTTTCGTGTTTCAAGAATATGCAGATCGAATGAGTGATCGTATCTT
ATCGAACACTTCCACGACGTTAGATCAGTTTCATGATTCACAAGTGGATT
TCGCTGAAGACCTCTCGCTCACTGTTTTATATGAAGCCAGGAAAGAAGTT
TATAACAACACGTCCACAAGCACACAGGCTAATGATGAGGAAAATAACAA
TAACGAAAGTACGCTTGACATGATAGCGGATAAACTTGTCGATCaaattt
tatttggaaaaacTTCTCCTCAAAACAAACTTGCTTCAACTGCTACTATA
GAGAAACCACCAGAACCTTCTGAAAAGGCTGCTATTCCCTCTGATTCAAC
AATATCTGTAGAAAATGATAATAAACTTGATGTCGAGGACGGAGCGATCA
AAACGGACTATGGCCGCCCACTTTCTGGTTACGCCAAAAATTTAGCAGAT
TTCCTCGcagatgatgatgaatttgAATTAAGCGATGCAGAGGATGAAGA
TGCAAAAGAGGAAATTGCTAGACCAAGGTCGGTTGGGGCAAGACCAAGCA
GGGAGGGAGCTAGAGACAGTCAAGAGGAGAGTGATTACGAAGACACAGAA
GATGACGAAGACGAGCTTTCGGATGACGAAGATGAAAGTTTTCTTGACGA
GGAAaatgtttcttttgaaaatgacgATGAAAGGACTACAATTTTCGTGA
ATGCTGATTTTGTTGATGATGAGGtagcaaagaaagaaaaattagaaaca
aaagaatttgagaCTCAAAAACTACAAGAACCTTTAGAAACGAGTGCTGT
TGAAAAACAAGAACCTGAGATTAAGATAGAAACGGAAAACAAAAAAGCCA
AAACATCACAATATGCTCCTGCAGTGAAGCGACGTCAAAATAATCGGCGC
ACGAGAGGAGAGCGTCCTAAGAGTTTATATGAACAAGATCTACAGGAGAT
TTTCAACGAGATTAAGATGCCGGCAGACGAGGATGGCGGCAATGATGATC
AAGATGACAGCAAAGAGGTTTTGGAGGATGGTATTAAGCCAGTGTCGGAA
ACGATGAACTTCTTGGAGAATCATATCGAAGCGAAACGAAACATGATGAA
GAgaaacgaagaagaagaagaagaatattTGATGATGGACGAAGATGAAC
ACGTTTCAAACAATTCAAGTGATTTGCTGGGTTgtcaaaaaacaaagaaa
gtctCACAACAAAAACGTGAGTCTGCATTTTTGATATCCCTCTTCTCTCT
TTTTGTTCAATCACTGATAAAGTTATATCATGTGGCGTTTATACCTACAA
ATACCTAAACTAAACCCtgctttaaaataaaaatacagtgGAAacgaaaa
agggaaaattttgacagactttattcCGAAGAAAGCAGCCTGTTGATTAT
CCTCCGTTTTATCCTCCATGGTAAGCTTTCTGTGGCTTATTTTCCCAGCA
ATAGTGTCCTTGCTTTCATAAGCTTTCAGTCAGTTTATCGAGATCTAAAA
AACATTGTTCTATTTTCTTTCAGCGCCAGTACTTGGTCGCGCGGCCGTTA
TTGATTTTGGATGTGGTGCTCTGAAAGCAGGTCTTTCAGGGGATATCCGC
CCGTCATGTTACTGTCCGTCAGTCATCGGCGTACCACGGAGGTTTTCTCA
GGACGTCAGTAAAATGAAGAAAGGATTTTACGTTGGTGATGAAGCATGGG
AGATTGCTGGTATGTTGCAGATCGGTAAGTTTGTTTGTTCACACATACAT
TCCAAAATTAATTATTACTAGTCCAATTCAAATTGGGGAATTCCATTGAA
AAATTCCACTCACCCAAAGGATAaagatttccgaaaaaattgttttaaag
tttaaacagGTATACTCAATCACTATGATCGAGTTCAAGTTTTCCTTGGA
GCACGTTTCCTCTAATTTTCCATCTTTTCATTTAATGACGGTCTTACCTC
CGCTCTTTTCTCCCTTTGTTCACAGAACATCCAATCAAACAAGAGATTAA
CAACTGGTCGGACATCGGCAAcatttttgaatatctttacgaTGAAGAAC
TGAAGATCAACAGTAACGAACATCCCATGCTTCTCACTGAACCTGGCCTT
ACTTCCTCAACTCATCGAGAAAAGTTGATTGAGGTCAGTTCTTCCTTTAC
TCGGTGTTTCTCCTTTGAGGGCTGGTCATTTCTAGAATTGATACATGCCC
ATTAGATAACTGTGACTGAGGAAAAAGTGATAGGATAGGAGCTTATGaca
tagtgtccttcagggtctctccccccccatgcctagaatgaaaattttcc
attcccccctcATTTTTCCCCACCCTGCCTCCAAAAATTTCTCTGTCCCC
CCCCCTCAAGNTCAATCACTGATAAAGTTATATCATGTGGCGTTTATACC
TACAAATACCTAAACTAAACCCtgctttaaaataaaaatacagtgGAAac
gaaaaagggaaaattttgacagactttattcCGAAGAAAGCAGCCTGTTG
ATTATCCTCCGTTTTATCCTCCATGGTAAGCTTTCTGTGGCTTATTTTCC
CAGCAATAGTGTCCTTGCTTTCATAAGCTTTCAGTCAGTTTATCGAGATC
TAAAAAACATTGTTCTATTTTCTTTCAGCGCCAGTACTTGGTCGCGCGGC
CGTTATTGATTTTGGATGTGGTGCTCTGAAAGCAGGTCTTTCAGGGGATA
TCCGCCCGTCATGTTACTGTCCGTCAGTCATCGGCGTACCACGGAGGTTT
TCTCAGGACGTCAGTAAAATGAAGAAAGGATTTTACGTTGGTGATGAAGC
ATGGGAGATTGCTGGTATGTTGCAGATCGGTAAGTTTGTTTGTTCACACA
TACATTCCAAAATTAATTATTACTAGTCCAATTCAAATTGGGGAATTCCA
TTGAAAAATTCCACTCACCCAAAGGATAaagatttccgaaaaaattgttt
taaagtttaaacagGTATACTCAATCACTATGATCGAGTTCAAGTTTTCC
TTGGAGCACGTTTCCTCTAATTTTCCATCTTTTCATTTAATGACGGTCTT
ACCTCCGCTCTTTTCTCCCTTTGTTCACAGAACATCCAATCAAACAAGAG
ATTAACAACTGGTCGGACATCGGCAAcatttttgaatatctttacgaTGA
AGAACTGAAGATCAACAGTAACGAACATCCCATGCTTCTCACTGAACCTG
GCCTTACTTCCTCAACTCATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016267-exon-sc0000232-1491911889:367619..370034 | TCONS_00016267-exon-sc0000232-1491911889:367619..370034 | Clytia hemisphaerica | exon |
| TCONS_00016267-exon-sc0000232-1510915933:367619..370034 | TCONS_00016267-exon-sc0000232-1510915933:367619..370034 | Clytia hemisphaerica | exon |
| TCONS_00016267-exon-sc0000232-1575043694:367619..370034 | TCONS_00016267-exon-sc0000232-1575043694:367619..370034 | Clytia hemisphaerica | exon |
| TCONS_00016267-exon-sc0000232-1491911889:370342..370542 | TCONS_00016267-exon-sc0000232-1491911889:370342..370542 | Clytia hemisphaerica | exon |
| TCONS_00016267-exon-sc0000232-1510915933:370342..370542 | TCONS_00016267-exon-sc0000232-1510915933:370342..370542 | Clytia hemisphaerica | exon |
| TCONS_00016267-exon-sc0000232-1575043694:370342..370542 | TCONS_00016267-exon-sc0000232-1575043694:370342..370542 | Clytia hemisphaerica | exon |
| TCONS_00016267-exon-sc0000232-1491911889:371899..372039 | TCONS_00016267-exon-sc0000232-1491911889:371899..372039 | Clytia hemisphaerica | exon |
| TCONS_00016267-exon-sc0000232-1510915933:371899..372039 | TCONS_00016267-exon-sc0000232-1510915933:371899..372039 | Clytia hemisphaerica | exon |
| TCONS_00016267-exon-sc0000232-1575043694:371899..372039 | TCONS_00016267-exon-sc0000232-1575043694:371899..372039 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000232 | supercontig | sc0000232:367619..372039 + |
Blast
BLAST of TCONS_00016267 vs. Swiss-Prot (Human)
Match: ACTG (Actin, cytoplasmic 2 OS=Homo sapiens GN=ACTG1 PE=1 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 1.993e-16 Identity = 44/104 (42.31%), Postives = 60/104 (57.69%), Query Frame = 1
Query: 2434 AAVIDFGCGALKAGLSGDIRPSCYCPSVIGVPRRFSQDVSKMKKGFYVGDEAWEIAGMLQIEHPIKQEI-NNWSDIGNIFEYLYDEELKINSNEHPMLLTEPGL 2742
A VID G G KAG +GD P PS++G PR V +K YVGDEA G+L +++PI+ I NW D+ I+ + + EL++ EHP+LLTE L
Sbjct: 7 ALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 110
The following BLAST results are available for this feature:
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