TCONS_00016266 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016266
Unique NameTCONS_00016266
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3969

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016266 ID=TCONS_00016266|Name=TCONS_00016266|organism=Clytia hemisphaerica|type=transcript|length=3969bp
GAGAAACTTGACCTCAAGGTTTTttagtaaaagaaaaaatcttttgacgA
AGGTTTGTTAATCCAAGATGAATTTATAGTGAACGAAAAATGACAActtc
ttgttttgaaaagttttatcaGAGATTTCGATCACTGGTTTTGTCTGTTA
AAAGGAAATCAATGCATTAAGTCAAAGTTTTACGGAGAGCGCGGGAGAGT
TGTCGACTTGTTATTTGATCAAACTTTAATGTCAACATTCGGAACAAAAA
GGATACGTTTTATTAAAACAAATATCTCACTCCTCTTATGACActtcaaa
tttaataaaaccACCAAGTCAAAACACAGTTCGCAAATAAAACTTCTTAT
GTGCTAATGCATGTGTTGTTTTGAGTCTTTATGAGAGAGTGAAGCTGTTC
ATAGCGCAAACACACCATCATGAACTATACTCAATTTCTGTACGGTGGGA
TTTCAGTGGCTTTCATATTCGTTGTAGGATTTTATCTGACCAATCGGAAC
CGTCGTAAAAGTTCCACATCTGACCAAACCAAAGATGAGAAAAGGCGACG
TCGTAAATCGTCCGCCAAAGAGACGCAAGACGGGGTGACGTTAAACGGAA
GCGTCAGGAAACGCACGGGAGAGAAAAGTAACGGGAATACGGAAACGTTA
ACGGTATCACCATCCACAGATCAAGATGAATTCGTGTTACAAACATTTTG
TAAAAGTCCTTTAACTCCACACAAAAGGTTATCTATCCATCATGGACATG
ATGATTTTGCTTTCGATCGACCACAAGATAAAGACGATGGAAAAATACGC
CATGTTGATTTTGATGCTATTTCAATTGCAAAGGTCACGGAGGAACAATA
TGCAGAAAGTTTGGATGAAAATAGGAATAGTGAGAAAATGAAAGATGTGA
CTATGGGCCAGGGACACGGTAAAGAGGATCAACTTGCTGAAAATGAACCT
AAAACTGTTGAAAATGAACTAAGAACTGCTGGAAATGAACTAAGAACTGC
TAAAAATGAAGAAGCAAAGCTTTATAAAGATGTTGATGCTTCAGAGATCA
TCTTTGAAGAGGATTCTCAGTCGAAAGATgaatcaaaaagtgaaaattca
GAGGTACTCGTGAAAGTCAATGAATTTGTTGaaagtaatgaaaataaaat
tgacgAGAAAGAGAGACAAATTGTTGAAACTGGAATTGTTGAAAGCGTGA
CCGAAAATGTTAATAGAGAGCCACCTGCAAAAAGATTAAGCAAATTTAAA
CTTTTCGTGTTTCAAGAATATGCAGATCGAATGAGTGATCGTATCTTATC
GAACACTTCCACGACGTTAGATCAGTTTCATGATTCACAAGTGGATTTCG
CTGAAGACCTCTCGCTCACTGTTTTATATGAAGCCAGGAAAGAAGTTTAT
AACAACACGTCCACAAGCACACAGGCTAATGATGAGGAAAATAACAATAA
CGAAAGTACGCTTGACATGATAGCGGATAAACTTGTCGATCaaattttat
ttggaaaaacTTCTCCTCAAAACAAACTTGCTTCAACTGCTACTATAGAG
AAACCACCAGAACCTTCTGAAAAGGCTGCTATTCCCTCTGATTCAACAAT
ATCTGTAGAAAATGATAATAAACTTGATGTCGAGGACGGAGCGATCAAAA
CGGACTATGGCCGCCCACTTTCTGGTTACGCCAAAAATTTAGCAGATTTC
CTCGcagatgatgatgaatttgAATTAAGCGATGCAGAGGATGAAGATGC
AAAAGAGGAAATTGCTAGACCAAGGTCGGTTGGGGCAAGACCAAGCAGGG
AGGGAGCTAGAGACAGTCAAGAGGAGAGTGATTACGAAGACACAGAAGAT
GACGAAGACGAGCTTTCGGATGACGAAGATGAAAGTTTTCTTGACGAGGA
AaatgtttcttttgaaaatgacgATGAAAGGACTACAATTTTCGTGAATG
CTGATTTTGTTGATGATGAGGtagcaaagaaagaaaaattagaaacaaaa
gaatttgagaCTCAAAAACTACAAGAACCTTTAGAAACGAGTGCTGTTGA
AAAACAAGAACCTGAGATTAAGATAGAAACGGAAAACAAAAAAGCCAAAA
CATCACAATATGCTCCTGCAGTGAAGCGACGTCAAAATAATCGGCGCACG
AGAGGAGAGCGTCCTAAGAGTTTATATGAACAAGATCTACAGGAGATTTT
CAACGAGATTAAGATGCCGGCAGACGAGGATGGCGGCAATGATGATCAAG
ATGACAGCAAAGAGGTTTTGGAGGATGGTATTAAGCCAGTGTCGGAAACG
ATGAACTTCTTGGAGAATCATATCGAAGCGAAACGAAACATGATGAAGAg
aaacgaagaagaagaagaagaatattTGATGATGGACGAAGATGAACACG
TTTCAAACAATTCAAGTGATTTGCTGGGTTgtcaaaaaacaaagaaagtc
tCACAACAAAAACCGCCAGTACTTGGTCGCGCGGCCGTTATTGATTTTGG
ATGTGGTGCTCTGAAAGCAGGTCTTTCAGGGGATATCCGCCCGTCATGTT
ACTGTCCGTCAGTCATCGGCGTACCACGGAGGTTTTCTCAGGACGTCAGT
AAAATGAAGAAAGGATTTTACGTTGGTGATGAAGCATGGGAGATTGCTGG
TATGTTGCAGATCGAACATCCAATCAAACAAGAGATTAACAACTGGTCGG
ACATCGGCAAcatttttgaatatctttacgaTGAAGAACTGAAGATCAAC
AGTAACGAACATCCCATGCTTCTCACTGAACCTGGCCTTACTTCCTCAAC
TCATCGAGAAAAGTTGATTGAGGTTATTTTTGAACGATTCAGCGCTCCAT
CTTTGATGCTGGCAAATCAGAGCTGTTTGGCGCTTTATTCAAAAGGTCTG
GTGACAGGATTAAGCTTGAACTCCGGATTCTACTTCACACAATCAACGCC
CATCTACGAAGGTCACGCCCTTCCGTACGCCACCACCCAACTGGATATCG
GCGGAGACACAATAACTAATTATTTGAATCGGAACATCATGTCAACCCAG
GGCCATCAGTTCAATACATCTTCAGAAAAATTACTCTTGAACTCTATGAA
ACAAGATCTATGTTACGTAGCATTAGACCCCTCATCAGAAGAGGAGAAAT
ATCGAGACCATCCGGATAAAATGAATGAATCTTTCGCATTACCGGACGGT
CAAGAAATCACCATCGGTCTCGAACGTTTTTCCACACCTGAAATCATGTT
TGATCCTTCGCTGATCGGCATTCGGAATCAACTGAACGTCGTCGATACCG
TGCTCGAGAGCTGCTCCAGGGTTGATGAGGATTTGCGagatattttgttt
gaaaacatCCTTGTTTCTGGCGGAAATTCAAAACTGAAAGGCTTCAATCA
ACGTCTGGAACACGAGTTGAAGAAACAGCCTACAGACCAAAGGATTACCG
CCTTGAAATACGCAGATAATGCTCTACTTTCGACTTGGGTCGGAGGGTCT
GTGTTAGCGTCCATAGCAGGCTATCGAGATCAGTGGATTTCCATGGACCT
TTATGCTGAATATGGCGCAAACATCGTTCATAAAATGTGCTTCTGATCTC
TTCTGTTTGTTTACAGTGATTTTATCACAAATATTTAgttgcttgaaaaa
aatagaagtTCTGAAGTTTTGAACATTCAAACAAAAGAGTAGCTGCTTAG
CTAACTCACTTTTtccaaacaaaatcattttgaaaaatgtcaattctATG
TTAATTGATTTTTATTCCGCGTGGACTGAACTTCCCCATAGATTGAGGCG
TGGGTAACGTCAGTATCAGCCGCTAGCACAACGTCAGAattaactacacg
ttttttttattagaacacctaaattatggctgagcctggatgtgctaatt
tttttagcagttttcagcctaaaatgttcttagatgcgTTCTTGATTTTT
CAggctactctaaatcgac
Run BLAST on NCBI

transcript from alignment at sc0000232:367572..377961+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016266 ID=TCONS_00016266|Name=TCONS_00016266|organism=Clytia hemisphaerica|type=transcript|length=10390bp|location=Sequence derived from alignment at sc0000232:367572..377961+ (Clytia hemisphaerica)
GAGAAACTTGACCTCAAGGTTTTttagtaaaagaaaaaatcttttgacgA
AGGTTTGTTAATCCAAGATGAATTTATAGTGAACGAAAAATGACAActtc
ttgttttgaaaagttttatcaGAGATTTCGATCACTGGTTTTGTCTGTTA
AAAGGAAATCAATGCATTAAGTCAAAGTTTTACGGAGAGCGCGGGAGAGT
TGTCGACTTGTTATTTGATCAAACTTTAATGTCAACATTCGGAACAAAAA
GGATACGTTTTATTAAAACAAATATCTCACTCCTCTTATGACActtcaaa
tttaataaaaccACCAAGTCAAAACACAGTTCGCAAATAAAACTTCTTAT
GTGCTAATGCATGTGTTGTTTTGAGTCTTTATGAGAGAGTGAAGCTGTTC
ATAGCGCAAACACACCATCATGAACTATACTCAATTTCTGTACGGTGGGA
TTTCAGTGGCTTTCATATTCGTTGTAGGATTTTATCTGACCAATCGGAAC
CGTCGTAAAAGTTCCACATCTGACCAAACCAAAGATGAGAAAAGGCGACG
TCGTAAATCGTCCGCCAAAGAGACGCAAGACGGGGTGACGTTAAACGGAA
GCGTCAGGAAACGCACGGGAGAGAAAAGTAACGGGAATACGGAAACGTTA
ACGGTATCACCATCCACAGATCAAGATGAATTCGTGTTACAAACATTTTG
TAAAAGTCCTTTAACTCCACACAAAAGGTTATCTATCCATCATGGACATG
ATGATTTTGCTTTCGATCGACCACAAGATAAAGACGATGGAAAAATACGC
CATGTTGATTTTGATGCTATTTCAATTGCAAAGGTCACGGAGGAACAATA
TGCAGAAAGTTTGGATGAAAATAGGAATAGTGAGAAAATGAAAGATGTGA
CTATGGGCCAGGGACACGGTAAAGAGGATCAACTTGCTGAAAATGAACCT
AAAACTGTTGAAAATGAACTAAGAACTGCTGGAAATGAACTAAGAACTGC
TAAAAATGAAGAAGCAAAGCTTTATAAAGATGTTGATGCTTCAGAGATCA
TCTTTGAAGAGGATTCTCAGTCGAAAGATgaatcaaaaagtgaaaattca
GAGGTACTCGTGAAAGTCAATGAATTTGTTGaaagtaatgaaaataaaat
tgacgAGAAAGAGAGACAAATTGTTGAAACTGGAATTGTTGAAAGCGTGA
CCGAAAATGTTAATAGAGAGCCACCTGCAAAAAGATTAAGCAAATTTAAA
CTTTTCGTGTTTCAAGAATATGCAGATCGAATGAGTGATCGTATCTTATC
GAACACTTCCACGACGTTAGATCAGTTTCATGATTCACAAGTGGATTTCG
CTGAAGACCTCTCGCTCACTGTTTTATATGAAGCCAGGAAAGAAGTTTAT
AACAACACGTCCACAAGCACACAGGCTAATGATGAGGAAAATAACAATAA
CGAAAGTACGCTTGACATGATAGCGGATAAACTTGTCGATCaaattttat
ttggaaaaacTTCTCCTCAAAACAAACTTGCTTCAACTGCTACTATAGAG
AAACCACCAGAACCTTCTGAAAAGGCTGCTATTCCCTCTGATTCAACAAT
ATCTGTAGAAAATGATAATAAACTTGATGTCGAGGACGGAGCGATCAAAA
CGGACTATGGCCGCCCACTTTCTGGTTACGCCAAAAATTTAGCAGATTTC
CTCGcagatgatgatgaatttgAATTAAGCGATGCAGAGGATGAAGATGC
AAAAGAGGAAATTGCTAGACCAAGGTCGGTTGGGGCAAGACCAAGCAGGG
AGGGAGCTAGAGACAGTCAAGAGGAGAGTGATTACGAAGACACAGAAGAT
GACGAAGACGAGCTTTCGGATGACGAAGATGAAAGTTTTCTTGACGAGGA
AaatgtttcttttgaaaatgacgATGAAAGGACTACAATTTTCGTGAATG
CTGATTTTGTTGATGATGAGGtagcaaagaaagaaaaattagaaacaaaa
gaatttgagaCTCAAAAACTACAAGAACCTTTAGAAACGAGTGCTGTTGA
AAAACAAGAACCTGAGATTAAGATAGAAACGGAAAACAAAAAAGCCAAAA
CATCACAATATGCTCCTGCAGTGAAGCGACGTCAAAATAATCGGCGCACG
AGAGGAGAGCGTCCTAAGAGTTTATATGAACAAGATCTACAGGAGATTTT
CAACGAGATTAAGATGCCGGCAGACGAGGATGGCGGCAATGATGATCAAG
ATGACAGCAAAGAGGTTTTGGAGGATGGTATTAAGCCAGTGTCGGAAACG
ATGAACTTCTTGGAGAATCATATCGAAGCGAAACGAAACATGATGAAGAg
aaacgaagaagaagaagaagaatattTGATGATGGACGAAGATGAACACG
TTTCAAACAATTCAAGTGATTTGCTGGGTTgtcaaaaaacaaagaaagtc
tCACAACAAAAACGTGAGTCTGCATTTTTGATATCCCTCTTCTCTCTTTT
TGTTCAATCACTGATAAAGTTATATCATGTGGCGTTTATACCTACAAATA
CCTAAACTAAACCCtgctttaaaataaaaatacagtgGAAacgaaaaagg
gaaaattttgacagactttattcCGAAGAAAGCAGCCTGTTGATTATCCT
CCGTTTTATCCTCCATGGTAAGCTTTCTGTGGCTTATTTTCCCAGCAATA
GTGTCCTTGCTTTCATAAGCTTTCAGTCAGTTTATCGAGATCTAAAAAAC
ATTGTTCTATTTTCTTTCAGCGCCAGTACTTGGTCGCGCGGCCGTTATTG
ATTTTGGATGTGGTGCTCTGAAAGCAGGTCTTTCAGGGGATATCCGCCCG
TCATGTTACTGTCCGTCAGTCATCGGCGTACCACGGAGGTTTTCTCAGGA
CGTCAGTAAAATGAAGAAAGGATTTTACGTTGGTGATGAAGCATGGGAGA
TTGCTGGTATGTTGCAGATCGGTAAGTTTGTTTGTTCACACATACATTCC
AAAATTAATTATTACTAGTCCAATTCAAATTGGGGAATTCCATTGAAAAA
TTCCACTCACCCAAAGGATAaagatttccgaaaaaattgttttaaagttt
aaacagGTATACTCAATCACTATGATCGAGTTCAAGTTTTCCTTGGAGCA
CGTTTCCTCTAATTTTCCATCTTTTCATTTAATGACGGTCTTACCTCCGC
TCTTTTCTCCCTTTGTTCACAGAACATCCAATCAAACAAGAGATTAACAA
CTGGTCGGACATCGGCAAcatttttgaatatctttacgaTGAAGAACTGA
AGATCAACAGTAACGAACATCCCATGCTTCTCACTGAACCTGGCCTTACT
TCCTCAACTCATCGAGAAAAGTTGATTGAGGTCAGTTCTTCCTTTACTCG
GTGTTTCTCCTTTGAGGGCTGGTCATTTCTAGAATTGATACATGCCCATT
AGATAACTGTGACTGAGGAAAAAGTGATAGGATAGGAGCTTATGacatag
tgtccttcagggtctctccccccccatgcctagaatgaaaattttccatt
cccccctcATTTTTCCCCACCCTGCCTCCAAAAATTTCTCTGTCCCCCCC
CCTCAAGNTCAATCACTGATAAAGTTATATCATGTGGCGTTTATACCTAC
AAATACCTAAACTAAACCCtgctttaaaataaaaatacagtgGAAacgaa
aaagggaaaattttgacagactttattcCGAAGAAAGCAGCCTGTTGATT
ATCCTCCGTTTTATCCTCCATGGTAAGCTTTCTGTGGCTTATTTTCCCAG
CAATAGTGTCCTTGCTTTCATAAGCTTTCAGTCAGTTTATCGAGATCTAA
AAAACATTGTTCTATTTTCTTTCAGCGCCAGTACTTGGTCGCGCGGCCGT
TATTGATTTTGGATGTGGTGCTCTGAAAGCAGGTCTTTCAGGGGATATCC
GCCCGTCATGTTACTGTCCGTCAGTCATCGGCGTACCACGGAGGTTTTCT
CAGGACGTCAGTAAAATGAAGAAAGGATTTTACGTTGGTGATGAAGCATG
GGAGATTGCTGGTATGTTGCAGATCGGTAAGTTTGTTTGTTCACACATAC
ATTCCAAAATTAATTATTACTAGTCCAATTCAAATTGGGGAATTCCATTG
AAAAATTCCACTCACCCAAAGGATAaagatttccgaaaaaattgttttaa
agtttaaacagGTATACTCAATCACTATGATCGAGTTCAAGTTTTCCTTG
GAGCACGTTTCCTCTAATTTTCCATCTTTTCATTTAATGACGGTCTTACC
TCCGCTCTTTTCTCCCTTTGTTCACAGAACATCCAATCAAACAAGAGATT
AACAACTGGTCGGACATCGGCAAcatttttgaatatctttacgaTGAAGA
ACTGAAGATCAACAGTAACGAACATCCCATGCTTCTCACTGAACCTGGCC
TTACTTCCTCAACTCATCGNAAATtcaggggggggaggacactatgttaT
GAAATAAAGCTAGGCGAAAGTTTTTCCCATAATTTGATTTACCGATTTTA
GTTTCATATAATAACCTATACCAGAGCGTTTCCATTAGGGTTTGGAATAT
TTCTGGTTGATTGGGAGAGATATTTCAAACATCTTTCTGCAATATACCAG
CAGGGATCATAAACTTGCTTGTGCGAAAAAGAAGATATCTCTCCTTCAAG
ATTTCACACGTTGAATTTTTTCCAAAGATACATTTATATTCTCAATTTTC
AGGTTATTTTTGAACGATTCAGCGCTCCATCTTTGATGCTGGCAAATCAG
AGCTGTTTGGCGCTTTATTCAAAAGGTCTGGTGACAGGATTAAGCTTGAA
CTCCGGATTCTACTTCACACAATCAACGCCCATCTACGAAGGTCACGCCC
TTCCGTACGCCACCACCCAACTGGATATCGGCGGAGACACAATAACTAAT
TATTTGAATCGGAACATCATGTCAACCCAGGGCCATCAGTTCAATACATC
TTCAGAAAAATTACTCTTGAACTCTATGAAACAAGATCTATGTTACGTAG
CATTAGGTATGTAGCAAATTTATTTACTATTAACTTTCCTATGGATTTTC
TAGTCttcgaatagaccttttcataaattacgtcacgaacatcacttgcc
tcataTTCAAACAATTGCCATAGCGTGTGAGACATTAAAtcgttttttat
gaataaaagtagttttaataaaatccgcttgGATTaaatcaccatgacaa
taatttcaaaacgaggcaagtgatgttcgtaacgtaatttatgaaaaggt
ctatcttgGAGAAAATGTTATTAAATATAACATTTTCAATTAAGTTAGAG
TTTACCTTGTGGGTAACAATATTATAATTTTCTTCGATTACATTGAGTTG
ATATGGGTATAAGGGTTTCGGACCCTGATGGTTTTTAGGGGTTAGGGGTA
GTGATACAGGGGTGCTTTGAATCTTTACTTGGGAGGAATATTGGGGAACT
TTGAAACTTGACATGGGTAGAGTAACCACCAGGGTTGACAGGGCTGTTTG
AAATATGATAGGAGTTTAGATATAGGGTATCTAAAGTTTGGCAGCAGTAG
TAGTGGTATACAGTGGTATTTTGAGCATTGATAGAACCAGAGACACGCAT
ATGATTTGAACTTTGACAGATATACAGTGGTGTTTCAGATTTGACCGAAG
TAGAGGAAAAGAGATGCATGGGATATTTGTAGTTTTAGAGACACCGGATa
agggggtttgtaggggttcgaaataccgttttcccgtcaaaatttttgct
gaatcccggaatcccgaaaattgaaaaaataataacaccgtcacgccggc
ttgtacagggcaaaaatgtacctaaataccgtcaccgtctgattttaaaa
taccgttttcccgtcaaaatttttgctgaatcccggaatcccgaaaattg
aaaaaataataacaccgtcacaccggcttgtacagggcaaaaaagtacct
aaataccgtcaccgtctgattttaaaataccgttttcccgtctctttttt
cgtcaaatcccgtaatactgtactaaaaaagggccaatcccgtcacaccg
taaaagtacaacccccccccctgataaggGGATTTTTGAATCTTTACAGC
TGTAAAAAACTATTGGCGTTTGGTGTTTAAGGTCTATCAGTTGAAGAGAT
GATGGATTGTTTGAAATCTCACATGAGTATAGATACATTGTattcaaaat
ttgacatactTGTTTGAAACTTAGAAGGTGAACCCTGATATGTGTGAAGA
TACAGGGGTGTACGAAATGGCGGTATTTAAACTCGACCGGTTTGTAGAGG
AATAGCAGTGTTGTTCAACCTTTAAAGGAATAGAGATATAGGGTTGTATG
AATGTCCGAGCAGATCCTGATGACTTTGCGCATGTCACGTATCCAAGGTG
TGACTCTGTAGATCTGCCTAATTTCAGAGCACCGCTTTGATAATTTTCAT
CCACATTTGGGATATTAAATAAACTTTTGAGTGCAGTGATTTACCTATGC
AAGAATTCGTCACTTAAAATCAAATATCAATAGATATAAACCTGAGAGTT
AAGTCAAttttgctttcgttttcaaggAAAATGCGACGCGTTTTTGAGTG
TTTCGTCTTAAGAAGCATCGTCAGATCGTCACATTCGCCATATCCCTTTA
GAAGAGAGCGTGGTATACGCGTCAGAATgaatgatctgttatgagattag
aTGTATGAACCTTaacatttaatatttttgtatttaacAATGATTCAGTG
CTCATCTGACGGGTCCCTAgtcttcatttttaaggtacccgagagtacta
aACATTTCATTTCTTTCGACAGACCCCTCATCAGAAGAGGAGAAATATCG
AGACCATCCGGATAAAATGAATGAATCTTTCGCATTACCGGACGGTCAAG
AAATCACCATCGGTCTCGAACGTTTTTCCACACCTGAAATCATGTTTGAT
CCTTCGCTGATCGGCATTCGGAATCAACTGAACGTCGTCGATACCGTGCT
CGAGAGCTGCTCCAGGTAAGATTCACTCTTGAAGTGGTTGCGATTCTTAG
CTGAAGAGAGGAGGAGACTTAATCTAATCATCAAAATGTAGAGTGATGAC
TAGTGTGTATAGATTTCCTTTCTAGCCCGAAGGCAAAAAAAAGccccaag
caaaaaaaattgactaatgCAAGAAAAATAGtcgctattgttttcgaaaa
tccgcgaagcttctgattaactattgtaatgtcacgtgacttagatagga
tttcctacctaaccccgacacaattttcagccaaagcacgacaccTAGTC
CTTCAGGCTTTATAAATCCGTGAGCTAAACAGTCATTGCATTTCTAGCGC
ATGCGCAGAATAATTATTCGCAACAAAAGAGTTGTTCCAAAGGGTTTGGT
GGGCGGAGAGAAAAACATGCAAATTTCAATAGCTTCTTTAGCTACGATAC
ACCAACGAAATCATTTTGATTGTCCTGTGAGCTGAAGGAAGTGAATACTG
CTCAAAACTTAACTTGGTGATAATCACCTCCCTGTCATTTCCCCCAACTT
TTTACGTAACTTGTTTGTTACAACAGAAATTTTCAGGAGCAACGAACCAG
AAGTGACAGTTTAAGTGCCTCATTAAAGAAATTAATGCCCCCCAGTCACT
TAATTATCGATTGCATAGATCATGCAACAATTAAATACCCTTCGATAAAA
TCTCTTACTTTCATGAACAATTCTTACACCATAATGAGGTGGTTACCATG
GTAACATGGATTATTACTTCGGTTTTTGACAAATCATCATGACGTTGCAT
CACATTAAATTCGCATTTTGGATCGTTAGTTTCACATTAGTATATTTTTC
ACTCACAGATCAATTATTATGTGACACGTAAATGAACTTTCTATGAACTA
TGAACAGTCCATCACTGTGGGAAGATAAACATTTTAAGAACCGATTAAAG
GCGTCCCATTTTGAACTCTTCAAAGGTTAATTTTAGTTCCTTAATTTTGT
CCAGGGTCAGGGTGGAAGACTGCGACCTCGACTTAAAATTAAATGTCATT
TCTCTAAAAGTATCTTTATAATTACTACATCACACTGCGACTAGACTCTC
TGCTGGAATAGTGAACCAGTCGAGGTTGTATTTGGCTTTTCCTTCAAttt
tatattccattaacactGTTCTCTTAAACCCTGGACATAAGCTTGTAGAC
TTTTCGAAAACCAATGAAGAACGATCTTTGGATGAACAGTACATCATTTT
TGACTGAATATTCATAGCGGTAGTTGATGTTTTAAAATGTTAAGCGAAAA
CTCCTTAACTTAAAACCTCAAGTCTATGACCACATCAATTTTGCTGTTTT
AGGCTCAATGAACTTACCAGAAAGTCATCAAAAGCTCCCAAGTTTTATGA
AGATCGGAACCCTGATTTATGGCCCTTTCTGATTCCGAAAATGAAAATGC
TCATAGTAGCCTAAAATAAAACTGAGTAATCAGAAAAAGgcgctgacgtc
atcattaaaTTGCCTACTGTAGGCAATTTAATGATGACGGGTTATGTCTT
GCGATGTTTATGCGTCTAGTATTTGAAGAACTTTATATAGAAAAaggttt
tggccattttgatCTTTATAGCTCATAGCTCCTGTACTATATGTGGAGCT
ACCAGAGCTACCACTAAAAAAATAAAGTCCCCGttcaaacaattttcttt
ttttacgcTGAAATAAGTAAAATGTCACAAACACCTTCGTCTGTTAGATC
TAGATGTTAGATTTCACGTTCCAaaacaaaatgcaaagtttcagTCAGAA
AAAAGTGGAAATTATTTGACCTGTGACGTCATATTGTGTTTGCTTCGTTC
TTCGTTTTCGTAGTGTGACCAAGGAAGGCAATCATGATTCTTCCCCGCTT
TGAGCACGTGATCGTGGAAGTCAACAATgaaataataacatcaaaaatTT
AATATGTTTATTATTTATTACATCTGATTCAATAAAACTGAAGGTCAGCC
GTTCTAgtagccttttttccaatacAACTTTCTGATATATGCGACGATTC
ATTGatcaataatttaataaaatactATAGTTGTACAACTGTAGAAATTG
GAGAAAATTCCTTCAAGTACTAATTTCCACACAAATTTTATCAtacttta
taatttgaaaatttaccaCATCTGAAATTCAGATGTGGATCTATAGTAGT
ATCGATTTTCTGAGTGAGagttcaagcaaaacaaaaagagggggcttcag
ggggtacccgattccgctaTTCCACCAATTTTTCCCCGATTTCTGTTAAG
CCGTCTAAAAAAGGACCGAAAATTACCTTCGCAagaatttttgctaaaat
ccgTTTTGCCGCATTAAAGTTGTCCAATTTTCCGTCTCCGGACCGAAATT
CTGTCTAAAATTTCgtcaaattccgccactccgctCGAAAAAAGAGCCTA
TTCTAACACTCAATATAGTCTACAATTATCGCGGTATTTCTCTAGTTGAC
TTAAGTGCTTTTAGTGGTCTCTTTTAGGTCACTTTTATCGCTTTTTATTG
AAGGAGTATGGTCGAAAGGGTAAGAAGTCaatgaaaacaattttataatg
aCCTATGACACTTCATGATTATAATTACTTGGGTCAATTTTTGATACCAG
GACTGAATTAACCTTTTAAATCATCTTTTCACCTTTTCAGGGTTGATGAG
GATTTGCGagatattttgtttgaaaacatCCTTGTTTCTGGCGGAAATTC
AAAACTGAAAGGCTTCAATCAACGTCTGGAACACGAGTTGAAGAAACAGC
CTACAGACCAAAGGATTACCGCCTTGAAATACGCAGATAATGCTCTACTT
TCGACTTGGGTCGGAGGGTCTGTGTTAGCGTCCATAGCAGGCTATCGAGA
TCAGTGGATTTCCATGGACCTTTATGCTGAATATGGCGCAAACATCGTTC
ATAAAATGTGCTTCTGATCTCTTCTGTTTGTTTACAGTGATTTTATCACA
AATATTTAgttgcttgaaaaaaatagaagtTCTGAAGTTTTGAACATTCA
AACAAAAGAGTAGCTGCTTAGCTAACTCACTTTTtccaaacaaaatcatt
ttgaaaaatgtcaattctATGTTAATTGATTTTTATTCCGCGTGGACTGA
ACTTCCCCATAGATTGAGGCGTGGGTAACGTCAGTATCAGCCGCTAGCAC
AACGTCAGAattaactacacgttttttttattagaacacctaaattatgg
ctgagcctggatgtgctaatttttttagcagttttcagcctaaaatgttc
ttagatgcgTTCTTGATTTTTCAggctactctaaatcgac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009088XLOC_009088Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016266-exon-sc0000232-1491911889:367572..370034TCONS_00016266-exon-sc0000232-1491911889:367572..370034Clytia hemisphaericaexon
TCONS_00016266-exon-sc0000232-1510915933:367572..370034TCONS_00016266-exon-sc0000232-1510915933:367572..370034Clytia hemisphaericaexon
TCONS_00016266-exon-sc0000232-1575043694:367572..370034TCONS_00016266-exon-sc0000232-1575043694:367572..370034Clytia hemisphaericaexon
TCONS_00016266-exon-sc0000232-1491911889:370342..370542TCONS_00016266-exon-sc0000232-1491911889:370342..370542Clytia hemisphaericaexon
TCONS_00016266-exon-sc0000232-1510915933:370342..370542TCONS_00016266-exon-sc0000232-1510915933:370342..370542Clytia hemisphaericaexon
TCONS_00016266-exon-sc0000232-1575043694:370342..370542TCONS_00016266-exon-sc0000232-1575043694:370342..370542Clytia hemisphaericaexon
TCONS_00016266-exon-sc0000232-1491911889:370794..370951TCONS_00016266-exon-sc0000232-1491911889:370794..370951Clytia hemisphaericaexon
TCONS_00016266-exon-sc0000232-1510915933:370794..370951TCONS_00016266-exon-sc0000232-1510915933:370794..370951Clytia hemisphaericaexon
TCONS_00016266-exon-sc0000232-1575043694:370794..370951TCONS_00016266-exon-sc0000232-1575043694:370794..370951Clytia hemisphaericaexon
TCONS_00016266-exon-sc0000232-1491911889:372324..372627TCONS_00016266-exon-sc0000232-1491911889:372324..372627Clytia hemisphaericaexon
TCONS_00016266-exon-sc0000232-1510915933:372324..372627TCONS_00016266-exon-sc0000232-1510915933:372324..372627Clytia hemisphaericaexon
TCONS_00016266-exon-sc0000232-1575043694:372324..372627TCONS_00016266-exon-sc0000232-1575043694:372324..372627Clytia hemisphaericaexon
TCONS_00016266-exon-sc0000232-1491911889:374444..374636TCONS_00016266-exon-sc0000232-1491911889:374444..374636Clytia hemisphaericaexon
TCONS_00016266-exon-sc0000232-1510915933:374444..374636TCONS_00016266-exon-sc0000232-1510915933:374444..374636Clytia hemisphaericaexon
TCONS_00016266-exon-sc0000232-1575043694:374444..374636TCONS_00016266-exon-sc0000232-1575043694:374444..374636Clytia hemisphaericaexon
TCONS_00016266-exon-sc0000232-1491911889:377312..377961TCONS_00016266-exon-sc0000232-1491911889:377312..377961Clytia hemisphaericaexon
TCONS_00016266-exon-sc0000232-1510915933:377312..377961TCONS_00016266-exon-sc0000232-1510915933:377312..377961Clytia hemisphaericaexon
TCONS_00016266-exon-sc0000232-1575043694:377312..377961TCONS_00016266-exon-sc0000232-1575043694:377312..377961Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000232supercontigsc0000232:367572..377961 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.417471	0.417108	0.112156	0.110242	13.374	9.46097	20.9067	23.3025	7.59492	10.488	6.20537	4.57444	1.25767	1.97066	3.02564e-06	2.06151	0.779614	1.213	2.77657	0.0234972	1.32602	3.91034	1.44117	1.37416	3.58911	0.942734	1.96278	1.49887	19.5281	18.0224
Blast
[Close]
BLAST of TCONS_00016266 vs. Swiss-Prot (Human)
Match: ACTG (Actin, cytoplasmic 2 OS=Homo sapiens GN=ACTG1 PE=1 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 2.118e-83
Identity = 144/373 (38.61%), Postives = 225/373 (60.32%), Query Frame = 3 
Query: 2481 AAVIDFGCGALKAGLSGDIRPSCYCPSVIGVPRRFSQDVSKMKKGFYVGDEAWEIAGMLQIEHPIKQEI-NNWSDIGNIFEYLYDEELKINSNEHPMLLTEPGLTSSTHREKLIEVIFERFSAPSLMLANQSCLALYSKGLVTGLSLNSGFYFTQSTPIYEGHALPYATTQLDIGGDTITNYLNRNIMSTQGHQFNTSSEKLLLNSMKQDLCYVALDPSSEEEKYRDHPDKMNESFALPDGQEITIGLERFSTPEIMFDPSLIGIRNQLNVVDTVLESCSRVDEDLRDILFENILVSGGNSKLKGFNQRLEHELKK-QPTDQRITALKYADNALLSTWVGGSVLASIAGYRDQWISMDLYAEYGANIVHKMCF 3593
            A VID G G  KAG +GD  P    PS++G PR     V   +K  YVGDEA    G+L +++PI+  I  NW D+  I+ + +  EL++   EHP+LLTE  L    +REK+ +++FE F+ P++ +A Q+ L+LY+ G  TG+ ++SG   T + PIYEG+ALP+A  +LD+ G  +T+YL + I++ +G+ F T++E+ ++  +K+ LCYVALD   +E         + +S+ LPDGQ ITIG ERF  PE +F PS +G+ +   + +T   S  + D D+R  L+ N ++SGG +   G   R++ E+    P+  +I  +   +    S W+GGS+LAS++ ++  WIS   Y E G +IVH+ CF
Sbjct:    7 ALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMK-ILTERGYSFTTTAEREIVRDIKEKLCYVALD-FEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMES-CGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK-YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
The following BLAST results are available for this feature:
BLAST of TCONS_00016266 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACTG2.118e-8338.61Actin, cytoplasmic 2 OS=Homo sapiens GN=ACTG1 PE=1... [more]
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